Wall clock time and date at job start Wed Apr 1 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 113.19761 * 2 1 4 4 C 1.55779 * 114.08590 * 227.08542 * 2 1 3 5 5 H 1.09003 * 114.12629 * 95.46707 * 4 2 1 6 6 N 1.46500 * 114.12616 * 323.09411 * 4 2 1 7 7 C 1.34780 * 119.99948 * 154.99361 * 6 4 2 8 8 O 1.21284 * 119.99700 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99641 * 180.02562 * 7 6 4 10 10 C 1.50289 * 109.47074 * 300.01067 * 9 7 6 11 11 C 1.32263 * 121.59566 * 303.37827 * 10 9 7 12 12 C 1.45208 * 123.03785 * 0.92672 * 11 10 9 13 13 C 1.32942 * 125.20094 * 319.61762 * 12 11 10 14 14 C 1.45196 * 125.19609 * 359.97438 * 13 12 11 15 15 C 1.32294 * 123.02687 * 40.43194 * 14 13 12 16 16 C 1.49307 * 83.36283 * 208.43406 * 4 2 1 17 17 H 1.09001 * 112.95664 * 284.46073 * 16 4 2 18 18 C 1.51201 * 125.56038 * 142.28296 * 16 4 2 19 19 C 1.54091 * 106.19728 * 198.49960 * 18 16 4 20 20 C 1.52068 * 112.72231 * 55.28679 * 19 18 16 21 21 N 1.48403 * 112.11413 * 313.47286 * 20 19 18 22 22 C 1.36929 * 123.17113 * 231.80536 * 21 20 19 23 23 H 1.08004 * 120.00319 * 214.33411 * 22 21 20 24 24 C 1.38806 * 119.99914 * 34.06243 * 22 21 20 25 25 N 1.31627 * 120.00159 * 17.04674 * 24 22 21 26 26 Si 1.86804 * 120.00316 * 197.04722 * 24 22 21 27 27 H 1.48495 * 109.47053 * 60.00019 * 26 24 22 28 28 H 1.48507 * 109.47194 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46936 * 299.99910 * 26 24 22 30 30 C 1.45380 * 113.66309 * 51.54118 * 21 20 19 31 31 H 1.09000 * 112.09522 * 60.01219 * 30 21 20 32 32 H 1.09007 * 109.46883 * 287.32759 * 1 2 3 33 33 H 1.08998 * 109.47308 * 47.32600 * 1 2 3 34 34 H 1.09002 * 109.47169 * 167.33045 * 1 2 3 35 35 H 1.09004 * 109.47515 * 198.60118 * 3 2 1 36 36 H 1.08999 * 109.46965 * 318.59958 * 3 2 1 37 37 H 1.08996 * 109.47702 * 78.60007 * 3 2 1 38 38 H 0.96992 * 120.00027 * 334.99627 * 6 4 2 39 39 H 1.08994 * 109.47106 * 60.00161 * 9 7 6 40 40 H 1.08000 * 119.20665 * 123.31787 * 10 9 7 41 41 H 1.07994 * 118.47497 * 180.93461 * 11 10 9 42 42 H 1.08003 * 117.39686 * 139.59014 * 12 11 10 43 43 H 1.08001 * 117.39836 * 179.97438 * 13 12 11 44 44 H 1.08010 * 118.48492 * 220.41724 * 14 13 12 45 45 H 1.07998 * 119.19896 * 179.00345 * 15 14 13 46 46 H 1.08993 * 110.10424 * 317.67292 * 18 16 4 47 47 H 1.09004 * 110.09927 * 79.32862 * 18 16 4 48 48 H 1.08994 * 108.84273 * 176.26235 * 19 18 16 49 49 H 1.09002 * 108.84324 * 294.72271 * 19 18 16 50 50 H 1.09001 * 108.91984 * 192.75576 * 20 19 18 51 51 H 1.09001 * 108.83554 * 74.13745 * 20 19 18 52 52 H 0.96996 * 120.00085 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1326 1.4063 0.0000 4 6 2.1657 -0.9684 -1.0415 5 1 2.4340 -0.4937 -1.9854 6 7 1.4340 -2.2257 -1.2148 7 6 1.5366 -2.9113 -2.3706 8 8 2.2350 -2.4876 -3.2671 9 6 0.7835 -4.2044 -2.5489 10 6 1.2236 -5.1889 -1.5022 11 6 2.4929 -5.5350 -1.3665 12 6 3.5553 -4.9873 -2.1910 13 6 3.4702 -4.7574 -3.4976 14 6 2.3008 -5.0162 -4.3184 15 6 1.0664 -4.7645 -3.9146 16 6 3.2859 -1.0158 -0.0555 17 1 3.9024 -0.1171 -0.0690 18 6 4.1032 -2.2405 0.2884 19 6 4.7829 -1.9385 1.6380 20 6 3.7895 -1.5521 2.7225 21 7 2.8029 -0.5513 2.2456 22 6 2.5436 0.6192 2.9071 23 1 1.5450 1.0308 2.9053 24 6 3.5628 1.2739 3.5848 25 7 4.8195 0.9779 3.3287 26 14 3.1511 2.5751 4.8603 27 1 2.3341 1.9676 5.9413 28 1 4.4074 3.1198 5.4351 29 1 2.3845 3.6729 4.2178 30 6 2.1420 -0.9280 1.0067 31 1 1.5931 -1.8647 1.1032 32 1 -0.3633 0.3061 0.9811 33 1 -0.3634 0.6966 -0.7555 34 1 -0.3633 -1.0027 -0.2254 35 1 3.1710 1.3567 -0.3278 36 1 1.5672 2.0439 -0.6796 37 1 2.0891 1.8203 1.0073 38 1 0.8758 -2.5647 -0.4977 39 1 -0.2857 -4.0192 -2.4466 40 1 0.4858 -5.6236 -0.8441 41 1 2.7510 -6.2586 -0.6075 42 1 4.4889 -4.7472 -1.7039 43 1 4.3401 -4.3454 -3.9875 44 1 2.4454 -5.4331 -5.3043 45 1 0.2421 -4.9661 -4.5826 46 1 3.4532 -3.1104 0.3827 47 1 4.8566 -2.4159 -0.4796 48 1 5.3329 -2.8224 1.9607 49 1 5.4863 -1.1170 1.5018 50 1 4.3351 -1.1368 3.5698 51 1 3.2586 -2.4466 3.0483 52 1 5.5318 1.4352 3.8025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087287225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:42 Heat of formation + Delta-G solvation = 78.621610 kcal Electronic energy + Delta-G solvation = -32563.855596 eV Core-core repulsion = 28724.300067 eV Total energy + Delta-G solvation = -3839.555529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.61379 -40.88540 -38.02416 -36.81740 -34.72458 -34.49410 -33.13907 -32.98439 -32.02449 -30.70908 -28.38400 -27.66865 -27.30924 -25.98198 -24.42994 -23.93387 -22.63431 -21.99292 -20.58587 -19.81445 -19.35342 -18.49753 -18.37544 -18.01308 -17.39213 -16.81536 -16.33357 -15.91917 -15.68516 -15.43095 -15.34600 -15.07918 -15.01255 -14.85434 -14.41222 -14.09720 -14.06471 -13.87830 -13.45400 -13.34888 -13.16269 -13.06603 -12.92481 -12.81501 -12.70934 -12.63997 -12.55025 -12.23185 -12.12658 -12.03481 -11.78072 -11.63371 -11.43693 -11.21102 -11.09778 -10.81451 -10.76815 -10.53812 -10.19958 -10.10467 -9.77807 -9.07181 -8.35361 -7.76852 -5.22396 0.40360 1.15025 1.48246 1.50807 1.55478 1.78041 2.26170 2.41210 2.56154 3.31317 3.42824 3.56909 3.82022 3.87075 3.93911 3.98156 4.08949 4.16496 4.20270 4.27011 4.33684 4.38299 4.45292 4.54954 4.60092 4.65991 4.71152 4.79272 4.81910 4.86691 4.93441 5.01938 5.06742 5.08838 5.10777 5.15194 5.20610 5.23158 5.32659 5.36221 5.45968 5.59310 5.61057 5.65870 5.70159 5.73254 5.75613 5.79521 5.90076 5.91732 5.93486 5.99080 6.53132 6.71243 7.20832 7.43052 7.91741 8.60083 9.28245 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003690 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.581053 B = 7586.091648 C = 8216.157765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 C -0.117 4.117 4 C 0.159 3.841 5 H 0.077 0.923 6 N -0.689 5.689 7 C 0.524 3.476 8 O -0.567 6.567 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.120 4.120 12 C -0.150 4.150 13 C -0.091 4.091 14 C -0.120 4.120 15 C -0.128 4.128 16 C -0.162 4.162 17 H 0.066 0.934 18 C -0.068 4.068 19 C -0.114 4.114 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.234 4.234 23 H 0.061 0.939 24 C -0.038 4.038 25 N -0.919 5.919 26 Si 0.946 3.054 27 H -0.282 1.282 28 H -0.301 1.301 29 H -0.277 1.277 30 C 0.141 3.859 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.050 0.950 51 H 0.008 0.992 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 -13.637 -11.595 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.175 4.175 4 C 0.052 3.948 5 H 0.095 0.905 6 N -0.340 5.340 7 C 0.311 3.689 8 O -0.446 6.446 9 C -0.069 4.069 10 C -0.157 4.157 11 C -0.138 4.138 12 C -0.168 4.168 13 C -0.109 4.109 14 C -0.138 4.138 15 C -0.146 4.146 16 C -0.183 4.183 17 H 0.084 0.916 18 C -0.105 4.105 19 C -0.153 4.153 20 C 0.042 3.958 21 N -0.305 5.305 22 C -0.364 4.364 23 H 0.079 0.921 24 C -0.235 4.235 25 N -0.565 5.565 26 Si 0.776 3.224 27 H -0.209 1.209 28 H -0.228 1.228 29 H -0.203 1.203 30 C 0.034 3.966 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.147 0.853 45 H 0.163 0.837 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.069 0.931 51 H 0.026 0.974 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.916 -13.230 -12.106 20.492 hybrid contribution 0.865 1.039 1.318 1.888 sum -9.051 -12.191 -10.788 18.626 Atomic orbital electron populations 1.21652 0.92613 1.02497 1.01659 1.21814 0.95989 0.94531 0.93926 1.21570 0.98810 0.94477 1.02607 1.20928 0.92103 0.85322 0.96432 0.90504 1.45481 1.48809 1.22506 1.17192 1.20972 0.81089 0.85594 0.81223 1.90676 1.41230 1.70125 1.42534 1.19372 1.02552 0.90563 0.94395 1.23149 0.96519 0.99264 0.96772 1.21263 0.93172 1.00004 0.99337 1.21100 0.99688 1.01855 0.94130 1.21081 0.98249 0.97055 0.94551 1.21188 0.92654 1.00176 0.99770 1.23004 0.97411 0.99927 0.94274 1.23013 0.97120 0.98579 0.99619 0.91572 1.20883 0.97766 0.96844 0.95043 1.21606 0.98559 0.98970 0.96140 1.20557 0.90119 0.89204 0.95939 1.43909 1.44359 1.18315 1.23954 1.18977 0.92526 0.98984 1.25919 0.92123 1.25640 0.95173 0.99693 1.02968 1.70128 0.98510 1.45058 1.42765 0.85674 0.76251 0.80095 0.80382 1.20877 1.22791 1.20330 1.21991 0.93942 0.95724 0.84975 0.91907 0.93014 0.91903 0.91023 0.94588 0.92200 0.91697 0.75361 0.84350 0.82866 0.85133 0.88417 0.88515 0.85278 0.83722 0.91739 0.94634 0.92499 0.95070 0.93121 0.97369 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.21 71.98 0.66 -2.70 16 2 C -0.06 -2.03 1.39 -56.69 -0.08 -2.11 16 3 C -0.12 -4.43 8.68 71.98 0.63 -3.81 16 4 C 0.16 5.11 3.94 42.25 0.17 5.28 16 5 H 0.08 2.76 7.45 -2.39 -0.02 2.75 16 6 N -0.69 -17.39 4.13 -455.76 -1.88 -19.27 16 7 C 0.52 13.48 5.48 87.66 0.48 13.96 16 8 O -0.57 -19.12 13.26 -3.04 -0.04 -19.16 16 9 C -0.05 -0.84 2.89 -13.29 -0.04 -0.88 16 10 C -0.14 -2.23 8.89 24.50 0.22 -2.01 16 11 C -0.12 -2.38 9.58 23.01 0.22 -2.16 16 12 C -0.15 -3.71 8.53 22.89 0.20 -3.51 16 13 C -0.09 -2.32 7.35 22.89 0.17 -2.15 16 14 C -0.12 -2.56 9.09 22.99 0.21 -2.35 16 15 C -0.13 -2.33 8.78 24.49 0.21 -2.11 16 16 C -0.16 -6.15 2.93 -15.89 -0.05 -6.19 16 17 H 0.07 3.07 5.89 -2.39 -0.01 3.06 16 18 C -0.07 -2.47 5.94 30.38 0.18 -2.29 16 19 C -0.11 -4.73 5.88 30.66 0.18 -4.55 16 20 C 0.17 7.67 5.69 85.71 0.49 8.16 16 21 N -0.58 -27.19 2.87 -690.72 -1.98 -29.17 16 22 C -0.23 -12.00 7.32 84.03 0.61 -11.39 16 23 H 0.06 3.09 7.64 -2.91 -0.02 3.07 16 24 C -0.04 -2.04 5.02 84.86 0.43 -1.62 16 25 N -0.92 -52.38 11.51 21.65 0.25 -52.13 16 26 Si 0.95 43.83 29.59 68.60 2.03 45.86 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 30 C 0.14 5.29 2.99 42.87 0.13 5.41 16 31 H 0.06 2.17 6.49 -2.39 -0.02 2.15 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.51 8.07 -2.39 -0.02 1.49 16 34 H 0.07 1.54 6.45 -2.39 -0.02 1.52 16 35 H 0.04 1.49 6.07 -2.39 -0.01 1.47 16 36 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 37 H 0.06 2.85 5.63 -2.39 -0.01 2.83 16 38 H 0.41 8.65 6.23 -92.71 -0.58 8.07 16 39 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.10 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.10 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.06 2.13 7.99 -2.39 -0.02 2.11 16 47 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 49 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 51 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -65.06 389.80 3.72 -61.34 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.33 Total: 29.55 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.01 Total: -17.02 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.62 Total: -100.57 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.04 Total: -19.16 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.06 3.72 -61.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087287225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.959 kcal (2) G-P(sol) polarization free energy of solvation -65.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds