Wall clock time and date at job start Wed Apr 1 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 113.31274 * 2 1 4 4 C 1.55784 * 114.08549 * 132.79249 * 2 1 3 5 5 H 1.08994 * 114.12570 * 36.90801 * 4 2 1 6 6 N 1.46502 * 114.12470 * 264.53185 * 4 2 1 7 7 C 1.34771 * 120.00101 * 158.14132 * 6 4 2 8 8 O 1.21286 * 119.99755 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00091 * 180.02562 * 7 6 4 10 10 C 1.50288 * 109.46502 * 59.97243 * 9 7 6 11 11 C 1.32267 * 121.59227 * 56.63383 * 10 9 7 12 12 C 1.45203 * 123.02937 * 359.04202 * 11 10 9 13 13 C 1.32942 * 125.19785 * 40.43236 * 12 11 10 14 14 C 1.45203 * 125.19852 * 359.97438 * 13 12 11 15 15 C 1.32295 * 123.02301 * 319.58477 * 14 13 12 16 16 C 1.50009 * 84.06870 * 150.71991 * 4 2 1 17 17 H 1.08997 * 112.50137 * 76.20886 * 16 4 2 18 18 C 1.51203 * 126.17239 * 219.70925 * 16 4 2 19 19 C 1.54086 * 106.19643 * 161.42839 * 18 16 4 20 20 C 1.52495 * 112.66914 * 304.56245 * 19 18 16 21 21 N 1.48406 * 111.87360 * 46.78808 * 20 19 18 22 22 C 1.36932 * 123.16931 * 128.12346 * 21 20 19 23 23 H 1.07995 * 120.00325 * 221.42509 * 22 21 20 24 24 C 1.38816 * 120.00040 * 41.42611 * 22 21 20 25 25 N 1.31613 * 120.00058 * 210.19817 * 24 22 21 26 26 Si 1.86803 * 119.99913 * 30.20069 * 24 22 21 27 27 H 1.48503 * 109.46991 * 84.68181 * 26 24 22 28 28 H 1.48500 * 109.47017 * 204.68438 * 26 24 22 29 29 H 1.48503 * 109.46898 * 324.68445 * 26 24 22 30 30 C 1.46258 * 112.69686 * 307.51947 * 21 20 19 31 31 H 1.08994 * 113.59603 * 301.28196 * 30 21 20 32 32 H 1.09001 * 109.47355 * 306.71463 * 1 2 3 33 33 H 1.09004 * 109.47378 * 66.71168 * 1 2 3 34 34 H 1.09002 * 109.47398 * 186.71323 * 1 2 3 35 35 H 1.09006 * 109.46972 * 199.01851 * 3 2 1 36 36 H 1.09007 * 109.46997 * 319.01218 * 3 2 1 37 37 H 1.09003 * 109.47397 * 79.01674 * 3 2 1 38 38 H 0.97005 * 119.99584 * 338.13934 * 6 4 2 39 39 H 1.09006 * 109.46443 * 299.98317 * 9 7 6 40 40 H 1.08006 * 119.19741 * 236.67747 * 10 9 7 41 41 H 1.07998 * 118.48166 * 179.05467 * 11 10 9 42 42 H 1.08002 * 117.39918 * 220.72058 * 12 11 10 43 43 H 1.07998 * 117.39964 * 180.02562 * 13 12 11 44 44 H 1.07995 * 118.48573 * 139.55677 * 14 13 12 45 45 H 1.07998 * 119.20153 * 180.99189 * 15 14 13 46 46 H 1.09008 * 110.09774 * 280.59828 * 18 16 4 47 47 H 1.09003 * 110.10230 * 42.14150 * 18 16 4 48 48 H 1.09005 * 108.83995 * 65.38342 * 19 18 16 49 49 H 1.08996 * 108.84552 * 183.73266 * 19 18 16 50 50 H 1.09000 * 109.00107 * 167.40447 * 20 19 18 51 51 H 1.08999 * 108.99875 * 286.16553 * 20 19 18 52 52 H 0.97001 * 119.99777 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1657 -0.9662 1.0436 5 1 1.6213 -1.9013 1.1745 6 7 2.5263 -0.3255 2.3108 7 6 2.6623 -1.0686 3.4269 8 8 2.4855 -2.2677 3.3823 9 6 3.0327 -0.4095 4.7305 10 6 1.9851 0.6048 5.0943 11 6 0.7109 0.2717 5.2164 12 6 0.2204 -1.0766 4.9929 13 6 0.8347 -2.1897 5.3814 14 6 2.0990 -2.2431 6.0936 15 6 3.1198 -1.4505 5.8108 16 6 3.2905 -1.0447 0.0543 17 1 3.9228 -0.1570 0.0702 18 6 4.0699 -2.2869 -0.3140 19 6 4.7569 -1.9803 -1.6587 20 6 3.7702 -1.5461 -2.7373 21 7 2.8192 -0.5225 -2.2369 22 6 2.5950 0.6677 -2.8757 23 1 2.4992 1.5783 -2.3030 24 6 2.4907 0.7039 -4.2594 25 7 2.8633 1.7799 -4.9195 26 14 1.8215 -0.7744 -5.1847 27 1 0.3378 -0.7144 -5.2068 28 1 2.3383 -0.7626 -6.5768 29 1 2.2563 -2.0216 -4.5058 30 6 2.1458 -0.9322 -1.0048 31 1 1.5804 -1.8588 -1.1040 32 1 -0.3634 0.6144 0.8238 33 1 -0.3634 0.4063 -0.9440 34 1 -0.3634 -1.0206 0.1201 35 1 3.1715 1.3542 -0.3349 36 1 1.5667 2.0458 -0.6741 37 1 2.0994 1.8163 1.0088 38 1 2.6673 0.6336 2.3465 39 1 3.9977 0.0865 4.6254 40 1 2.2799 1.6307 5.2594 41 1 0.0027 1.0380 5.4950 42 1 -0.7157 -1.1838 4.4651 43 1 0.3557 -3.1291 5.1480 44 1 2.2109 -2.9625 6.8912 45 1 4.0380 -1.5542 6.3698 46 1 4.8186 -2.4995 0.4493 47 1 3.3939 -3.1352 -0.4215 48 1 5.4864 -1.1845 -1.5080 49 1 5.2796 -2.8742 -1.9990 50 1 4.3246 -1.1334 -3.5801 51 1 3.2088 -2.4168 -3.0759 52 1 2.7908 1.8050 -5.8865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087287226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:48 Heat of formation + Delta-G solvation = 87.797879 kcal Electronic energy + Delta-G solvation = -31922.787731 eV Core-core repulsion = 28083.630115 eV Total energy + Delta-G solvation = -3839.157616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.11531 -39.93520 -37.07222 -35.40620 -33.49175 -33.01475 -32.38716 -32.07370 -30.77376 -29.44176 -27.22937 -26.83088 -25.73036 -24.46891 -23.67280 -22.28756 -21.43927 -20.14125 -19.62578 -19.00126 -18.02190 -17.63959 -17.28314 -16.69601 -16.42367 -15.62627 -15.04514 -14.69140 -14.42759 -14.32969 -14.13082 -13.87349 -13.63928 -13.30375 -13.28741 -12.92008 -12.72011 -12.60558 -12.47017 -12.32164 -12.03876 -12.01548 -11.71115 -11.64094 -11.32843 -11.15824 -11.05275 -10.98951 -10.67243 -10.45897 -10.41717 -10.28336 -10.24537 -10.05814 -9.75833 -9.58606 -9.52943 -9.33047 -8.96645 -8.61768 -8.26968 -8.23555 -6.55742 -6.04786 -3.41584 1.15559 1.90289 2.77894 3.13270 3.40418 3.48569 3.51005 3.55965 4.56936 4.60727 4.67823 4.69496 4.81648 4.83790 4.98360 4.99225 5.06524 5.13790 5.17231 5.30158 5.33977 5.51501 5.55034 5.63091 5.75594 5.79524 5.84847 5.85475 5.94012 6.02006 6.04024 6.10904 6.18072 6.31724 6.33011 6.40596 6.41343 6.43667 6.50180 6.55661 6.62235 6.63799 6.66324 6.67608 6.68954 6.76165 6.85424 6.90286 6.95826 7.00279 7.19648 7.78493 8.00802 8.43253 8.47521 8.95232 9.71366 10.31745 11.10658 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.003326 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.002934 B = 8416.084818 C = 8877.482961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.117 4.117 4 C 0.145 3.855 5 H 0.109 0.891 6 N -0.709 5.709 7 C 0.523 3.477 8 O -0.534 6.534 9 C -0.051 4.051 10 C -0.148 4.148 11 C -0.105 4.105 12 C -0.147 4.147 13 C -0.073 4.073 14 C -0.104 4.104 15 C -0.126 4.126 16 C -0.164 4.164 17 H 0.096 0.904 18 C -0.088 4.088 19 C -0.130 4.130 20 C 0.139 3.861 21 N -0.579 5.579 22 C -0.264 4.264 23 H 0.086 0.914 24 C 0.046 3.954 25 N -0.889 5.889 26 Si 0.844 3.156 27 H -0.289 1.289 28 H -0.299 1.299 29 H -0.256 1.256 30 C 0.141 3.859 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.398 0.602 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.062 0.938 51 H 0.024 0.976 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -3.475 20.789 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.065 4.065 3 C -0.174 4.174 4 C 0.040 3.960 5 H 0.127 0.873 6 N -0.359 5.359 7 C 0.309 3.691 8 O -0.411 6.411 9 C -0.072 4.072 10 C -0.166 4.166 11 C -0.123 4.123 12 C -0.165 4.165 13 C -0.091 4.091 14 C -0.122 4.122 15 C -0.144 4.144 16 C -0.185 4.185 17 H 0.114 0.886 18 C -0.125 4.125 19 C -0.170 4.170 20 C 0.014 3.986 21 N -0.302 5.302 22 C -0.392 4.392 23 H 0.103 0.897 24 C -0.156 4.156 25 N -0.529 5.529 26 Si 0.672 3.328 27 H -0.216 1.216 28 H -0.226 1.226 29 H -0.181 1.181 30 C 0.034 3.966 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.233 0.767 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.042 0.958 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.251 -4.186 20.519 20.979 hybrid contribution -0.396 -0.365 -0.817 0.978 sum -1.647 -4.552 19.703 20.288 Atomic orbital electron populations 1.21688 0.94586 1.00964 1.01704 1.21877 0.94604 0.95530 0.94467 1.21628 1.02554 0.93926 0.99320 1.22343 0.96896 0.96734 0.80028 0.87339 1.45986 1.70287 1.11170 1.08466 1.20307 0.76721 0.87384 0.84735 1.90672 1.50062 1.14634 1.85708 1.19250 0.99915 0.95368 0.92671 1.22901 0.92801 0.98254 1.02651 1.21105 0.95954 0.96044 0.99204 1.20994 1.01551 0.92014 1.01957 1.21015 0.94560 0.97813 0.95701 1.20990 0.93639 0.98667 0.98944 1.22681 0.98615 0.94499 0.98601 1.23348 0.97648 0.99412 0.98109 0.88558 1.21093 0.98490 0.96832 0.96108 1.21953 0.99006 0.99897 0.96108 1.21388 0.90664 0.91806 0.94720 1.44298 1.41100 1.17872 1.26947 1.18774 1.46683 0.84617 0.89099 0.89674 1.25709 0.97447 0.95547 0.96889 1.69985 1.45120 1.30049 1.07705 0.87407 0.80364 0.86150 0.78856 1.21612 1.22591 1.18092 1.21834 0.92675 0.95049 0.87071 0.92911 0.93332 0.91794 0.93243 0.90670 0.91276 0.94590 0.76685 0.87764 0.86068 0.86510 0.87143 0.87094 0.86726 0.86452 0.93665 0.92812 0.92557 0.93125 0.91938 0.95824 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.22 37.15 0.34 -1.67 16 2 C -0.06 -1.03 1.38 -158.40 -0.22 -1.25 16 3 C -0.12 -1.89 6.86 37.16 0.25 -1.63 16 4 C 0.14 2.20 3.48 -71.82 -0.25 1.95 16 5 H 0.11 1.81 7.48 -51.93 -0.39 1.42 16 6 N -0.71 -9.23 5.23 -57.65 -0.30 -9.53 16 7 C 0.52 7.03 5.48 -10.99 -0.06 6.97 16 8 O -0.53 -8.89 13.30 5.55 0.07 -8.81 16 9 C -0.05 -0.52 2.89 -94.48 -0.27 -0.79 16 10 C -0.15 -1.33 8.89 -36.43 -0.32 -1.66 16 11 C -0.11 -1.02 9.58 -38.75 -0.37 -1.39 16 12 C -0.15 -1.63 8.53 -38.65 -0.33 -1.96 16 13 C -0.07 -0.84 7.35 -38.65 -0.28 -1.13 16 14 C -0.10 -1.12 9.09 -38.74 -0.35 -1.48 16 15 C -0.13 -1.29 8.77 -36.44 -0.32 -1.61 16 16 C -0.16 -2.76 2.88 -95.22 -0.27 -3.03 16 17 H 0.10 1.73 6.09 -51.93 -0.32 1.42 16 18 C -0.09 -1.47 6.10 -27.07 -0.17 -1.63 16 19 C -0.13 -2.31 5.90 -26.42 -0.16 -2.46 16 20 C 0.14 2.95 4.47 -3.25 -0.01 2.93 16 21 N -0.58 -12.99 2.29 -168.57 -0.39 -13.38 16 22 C -0.26 -6.86 9.24 -15.06 -0.14 -7.00 16 23 H 0.09 2.31 5.36 -52.49 -0.28 2.03 16 24 C 0.05 1.28 5.06 -17.43 -0.09 1.19 16 25 N -0.89 -26.14 13.97 55.49 0.78 -25.36 16 26 Si 0.84 21.17 27.30 -169.99 -4.64 16.53 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.26 -6.12 4.80 56.52 0.27 -5.85 16 30 C 0.14 2.69 3.09 -71.51 -0.22 2.47 16 31 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.07 1.36 5.55 -51.93 -0.29 1.08 16 36 H 0.07 1.24 7.19 -51.92 -0.37 0.86 16 37 H 0.04 0.46 6.59 -51.93 -0.34 0.12 16 38 H 0.40 4.53 6.64 -40.82 -0.27 4.26 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.11 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 47 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 1.43 7.13 -51.93 -0.37 1.06 16 51 H 0.02 0.52 6.46 -51.93 -0.34 0.18 16 52 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -30.48 387.41 -10.44 -40.92 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.56 Total: 6.97 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.24 Total: -13.18 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.09 Total: -48.27 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.64 Total: 16.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.48 -10.44 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087287226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.715 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds