Wall clock time and date at job start Wed Apr 1 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 113.31274 * 2 1 4 4 C 1.55784 * 114.08549 * 132.79249 * 2 1 3 5 5 H 1.08994 * 114.12570 * 36.90801 * 4 2 1 6 6 N 1.46502 * 114.12470 * 264.53185 * 4 2 1 7 7 C 1.34771 * 120.00101 * 158.14132 * 6 4 2 8 8 O 1.21286 * 119.99755 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00091 * 180.02562 * 7 6 4 10 10 C 1.50288 * 109.46502 * 59.97243 * 9 7 6 11 11 C 1.32267 * 121.59227 * 56.63383 * 10 9 7 12 12 C 1.45203 * 123.02937 * 359.04202 * 11 10 9 13 13 C 1.32942 * 125.19785 * 40.43236 * 12 11 10 14 14 C 1.45203 * 125.19852 * 359.97438 * 13 12 11 15 15 C 1.32295 * 123.02301 * 319.58477 * 14 13 12 16 16 C 1.50009 * 84.06870 * 150.71991 * 4 2 1 17 17 H 1.08997 * 112.50137 * 76.20886 * 16 4 2 18 18 C 1.51203 * 126.17239 * 219.70925 * 16 4 2 19 19 C 1.54086 * 106.19643 * 161.42839 * 18 16 4 20 20 C 1.52495 * 112.66914 * 304.56245 * 19 18 16 21 21 N 1.48406 * 111.87360 * 46.78808 * 20 19 18 22 22 C 1.36932 * 123.16931 * 128.12346 * 21 20 19 23 23 H 1.07995 * 120.00325 * 221.42509 * 22 21 20 24 24 C 1.38816 * 120.00040 * 41.42611 * 22 21 20 25 25 N 1.31613 * 120.00058 * 210.19817 * 24 22 21 26 26 Si 1.86803 * 119.99913 * 30.20069 * 24 22 21 27 27 H 1.48503 * 109.46991 * 84.68181 * 26 24 22 28 28 H 1.48500 * 109.47017 * 204.68438 * 26 24 22 29 29 H 1.48503 * 109.46898 * 324.68445 * 26 24 22 30 30 C 1.46258 * 112.69686 * 307.51947 * 21 20 19 31 31 H 1.08994 * 113.59603 * 301.28196 * 30 21 20 32 32 H 1.09001 * 109.47355 * 306.71463 * 1 2 3 33 33 H 1.09004 * 109.47378 * 66.71168 * 1 2 3 34 34 H 1.09002 * 109.47398 * 186.71323 * 1 2 3 35 35 H 1.09006 * 109.46972 * 199.01851 * 3 2 1 36 36 H 1.09007 * 109.46997 * 319.01218 * 3 2 1 37 37 H 1.09003 * 109.47397 * 79.01674 * 3 2 1 38 38 H 0.97005 * 119.99584 * 338.13934 * 6 4 2 39 39 H 1.09006 * 109.46443 * 299.98317 * 9 7 6 40 40 H 1.08006 * 119.19741 * 236.67747 * 10 9 7 41 41 H 1.07998 * 118.48166 * 179.05467 * 11 10 9 42 42 H 1.08002 * 117.39918 * 220.72058 * 12 11 10 43 43 H 1.07998 * 117.39964 * 180.02562 * 13 12 11 44 44 H 1.07995 * 118.48573 * 139.55677 * 14 13 12 45 45 H 1.07998 * 119.20153 * 180.99189 * 15 14 13 46 46 H 1.09008 * 110.09774 * 280.59828 * 18 16 4 47 47 H 1.09003 * 110.10230 * 42.14150 * 18 16 4 48 48 H 1.09005 * 108.83995 * 65.38342 * 19 18 16 49 49 H 1.08996 * 108.84552 * 183.73266 * 19 18 16 50 50 H 1.09000 * 109.00107 * 167.40447 * 20 19 18 51 51 H 1.08999 * 108.99875 * 286.16553 * 20 19 18 52 52 H 0.97001 * 119.99777 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1657 -0.9662 1.0436 5 1 1.6213 -1.9013 1.1745 6 7 2.5263 -0.3255 2.3108 7 6 2.6623 -1.0686 3.4269 8 8 2.4855 -2.2677 3.3823 9 6 3.0327 -0.4095 4.7305 10 6 1.9851 0.6048 5.0943 11 6 0.7109 0.2717 5.2164 12 6 0.2204 -1.0766 4.9929 13 6 0.8347 -2.1897 5.3814 14 6 2.0990 -2.2431 6.0936 15 6 3.1198 -1.4505 5.8108 16 6 3.2905 -1.0447 0.0543 17 1 3.9228 -0.1570 0.0702 18 6 4.0699 -2.2869 -0.3140 19 6 4.7569 -1.9803 -1.6587 20 6 3.7702 -1.5461 -2.7373 21 7 2.8192 -0.5225 -2.2369 22 6 2.5950 0.6677 -2.8757 23 1 2.4992 1.5783 -2.3030 24 6 2.4907 0.7039 -4.2594 25 7 2.8633 1.7799 -4.9195 26 14 1.8215 -0.7744 -5.1847 27 1 0.3378 -0.7144 -5.2068 28 1 2.3383 -0.7626 -6.5768 29 1 2.2563 -2.0216 -4.5058 30 6 2.1458 -0.9322 -1.0048 31 1 1.5804 -1.8588 -1.1040 32 1 -0.3634 0.6144 0.8238 33 1 -0.3634 0.4063 -0.9440 34 1 -0.3634 -1.0206 0.1201 35 1 3.1715 1.3542 -0.3349 36 1 1.5667 2.0458 -0.6741 37 1 2.0994 1.8163 1.0088 38 1 2.6673 0.6336 2.3465 39 1 3.9977 0.0865 4.6254 40 1 2.2799 1.6307 5.2594 41 1 0.0027 1.0380 5.4950 42 1 -0.7157 -1.1838 4.4651 43 1 0.3557 -3.1291 5.1480 44 1 2.2109 -2.9625 6.8912 45 1 4.0380 -1.5542 6.3698 46 1 4.8186 -2.4995 0.4493 47 1 3.3939 -3.1352 -0.4215 48 1 5.4864 -1.1845 -1.5080 49 1 5.2796 -2.8742 -1.9990 50 1 4.3246 -1.1334 -3.5801 51 1 3.2088 -2.4168 -3.0759 52 1 2.7908 1.8050 -5.8865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087287226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:47 Heat of formation + Delta-G solvation = 71.521972 kcal Electronic energy + Delta-G solvation = -31923.493507 eV Core-core repulsion = 28083.630115 eV Total energy + Delta-G solvation = -3839.863392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.43815 -40.95667 -38.04861 -36.92356 -34.82379 -34.57902 -33.14139 -33.06494 -32.52003 -30.85409 -28.58078 -27.78600 -27.31466 -25.98216 -24.42583 -23.79316 -22.77560 -21.46542 -21.09290 -20.09781 -19.28693 -18.57119 -18.39508 -18.01142 -17.40232 -16.94533 -16.81753 -15.82993 -15.69887 -15.50313 -15.33371 -15.09885 -14.98249 -14.89052 -14.58797 -14.29868 -14.13348 -14.05164 -13.64494 -13.36453 -13.35397 -13.08261 -13.05659 -12.80976 -12.72696 -12.69179 -12.65616 -12.44793 -12.00545 -11.95548 -11.80173 -11.68316 -11.51793 -11.43324 -11.13929 -11.09425 -10.74190 -10.63333 -10.20868 -10.11640 -9.76823 -9.06393 -8.40508 -8.18134 -5.49390 0.39885 1.15235 1.36077 1.44273 1.51308 1.79387 2.29727 2.45402 2.50662 3.03990 3.24311 3.45539 3.70049 3.83818 3.87156 3.93376 4.03110 4.08444 4.17262 4.19259 4.26946 4.34114 4.39502 4.46602 4.53656 4.59480 4.62158 4.66078 4.74232 4.83873 4.84395 4.94598 5.00614 5.06182 5.07923 5.10806 5.11427 5.13635 5.20708 5.27619 5.29591 5.33267 5.50395 5.55266 5.60178 5.64499 5.72096 5.80516 5.89182 5.92149 5.97614 5.98803 6.38295 6.75548 6.99983 7.44514 7.67470 8.33620 9.01508 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.003326 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.002934 B = 8416.084818 C = 8877.482961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.109 4.109 4 C 0.166 3.834 5 H 0.099 0.901 6 N -0.702 5.702 7 C 0.521 3.479 8 O -0.567 6.567 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.120 4.120 12 C -0.153 4.153 13 C -0.090 4.090 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.148 4.148 17 H 0.088 0.912 18 C -0.084 4.084 19 C -0.121 4.121 20 C 0.136 3.864 21 N -0.590 5.590 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.935 5.935 26 Si 0.892 3.108 27 H -0.298 1.298 28 H -0.307 1.307 29 H -0.240 1.240 30 C 0.120 3.880 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.408 0.592 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.140 0.860 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.039 0.961 51 H 0.021 0.979 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -3.794 23.621 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 C -0.166 4.166 4 C 0.060 3.940 5 H 0.117 0.883 6 N -0.353 5.353 7 C 0.309 3.691 8 O -0.446 6.446 9 C -0.073 4.073 10 C -0.158 4.158 11 C -0.137 4.137 12 C -0.171 4.171 13 C -0.109 4.109 14 C -0.138 4.138 15 C -0.149 4.149 16 C -0.169 4.169 17 H 0.106 0.894 18 C -0.122 4.122 19 C -0.160 4.160 20 C 0.012 3.988 21 N -0.314 5.314 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.203 4.203 25 N -0.579 5.579 26 Si 0.720 3.280 27 H -0.225 1.225 28 H -0.235 1.235 29 H -0.164 1.164 30 C 0.013 3.987 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.146 0.854 45 H 0.157 0.843 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.058 0.942 51 H 0.039 0.961 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.658 -4.526 23.390 23.833 hybrid contribution -0.583 -0.291 -1.605 1.732 sum -1.241 -4.817 21.785 22.346 Atomic orbital electron populations 1.21645 0.93734 1.01676 1.01500 1.21883 0.95323 0.95319 0.93681 1.21497 1.00579 0.93603 1.00896 1.21869 0.95408 0.95990 0.80743 0.88335 1.45851 1.70130 1.11671 1.07617 1.20906 0.75654 0.87025 0.85550 1.90668 1.51379 1.16280 1.86276 1.19368 1.01573 0.95679 0.90637 1.23132 0.92002 0.99195 1.01433 1.21295 0.96912 0.95615 0.99922 1.21163 1.01446 0.92908 1.01622 1.21116 0.95403 0.97745 0.96587 1.21195 0.93522 0.99575 0.99516 1.22981 0.99202 0.94151 0.98551 1.23254 0.96991 0.99243 0.97441 0.89363 1.21068 0.98744 0.96633 0.95741 1.21828 0.97929 1.00726 0.95533 1.21401 0.90922 0.91027 0.95457 1.44393 1.42232 1.17205 1.27552 1.18811 1.43527 0.85643 0.88868 0.91294 1.26163 0.98938 0.97277 0.97942 1.70070 1.48134 1.32048 1.07623 0.86630 0.79049 0.84665 0.77625 1.22542 1.23469 1.16386 1.22097 0.94551 0.95983 0.86061 0.93169 0.91142 0.93811 0.92665 0.92826 0.93566 0.90856 0.75428 0.85194 0.83097 0.84732 0.87525 0.88045 0.85427 0.84274 0.92225 0.92686 0.92927 0.90733 0.94191 0.96077 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.22 71.98 0.66 -3.06 16 2 C -0.06 -1.88 1.38 -54.70 -0.08 -1.96 16 3 C -0.11 -3.36 6.86 71.98 0.49 -2.87 16 4 C 0.17 4.70 3.48 42.47 0.15 4.85 16 5 H 0.10 3.11 7.48 -2.39 -0.02 3.09 16 6 N -0.70 -16.15 5.23 -454.69 -2.38 -18.53 16 7 C 0.52 12.55 5.48 87.66 0.48 13.03 16 8 O -0.57 -17.79 13.30 -3.05 -0.04 -17.83 16 9 C -0.05 -0.87 2.89 -13.30 -0.04 -0.91 16 10 C -0.14 -1.96 8.89 24.50 0.22 -1.74 16 11 C -0.12 -1.96 9.58 23.01 0.22 -1.74 16 12 C -0.15 -3.17 8.53 22.89 0.20 -2.98 16 13 C -0.09 -2.01 7.35 22.89 0.17 -1.84 16 14 C -0.12 -2.37 9.09 22.99 0.21 -2.16 16 15 C -0.13 -2.30 8.77 24.49 0.21 -2.09 16 16 C -0.15 -4.72 2.88 -13.77 -0.04 -4.76 16 17 H 0.09 3.02 6.09 -2.39 -0.01 3.00 16 18 C -0.08 -2.62 6.10 30.37 0.19 -2.44 16 19 C -0.12 -4.06 5.90 30.79 0.18 -3.88 16 20 C 0.14 5.70 4.47 85.84 0.38 6.08 16 21 N -0.59 -26.41 2.29 -687.25 -1.58 -27.98 16 22 C -0.24 -12.65 9.24 84.04 0.78 -11.87 16 23 H 0.07 3.85 5.36 -2.91 -0.02 3.83 16 24 C -0.01 -0.31 5.06 84.86 0.43 0.12 16 25 N -0.94 -56.78 13.97 21.65 0.30 -56.47 16 26 Si 0.89 44.63 27.30 68.60 1.87 46.51 16 27 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 28 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 29 H -0.24 -11.18 4.80 99.48 0.48 -10.71 16 30 C 0.12 4.46 3.09 42.81 0.13 4.59 16 31 H 0.05 1.93 7.95 -2.39 -0.02 1.91 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 35 H 0.05 1.90 5.55 -2.38 -0.01 1.89 16 36 H 0.05 1.64 7.19 -2.38 -0.02 1.62 16 37 H 0.07 1.68 6.59 -2.39 -0.02 1.66 16 38 H 0.41 7.73 6.64 -92.70 -0.62 7.12 16 39 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.11 2.18 8.06 -2.91 -0.02 2.15 16 43 H 0.10 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 46 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.05 1.72 8.00 -2.39 -0.02 1.70 16 48 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.04 1.82 7.13 -2.39 -0.02 1.81 16 51 H 0.02 0.90 6.46 -2.39 -0.02 0.88 16 52 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -67.48 387.41 3.19 -64.29 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.06 Total: 25.66 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.95 Total: -15.64 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.65 Total: -102.99 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.04 Total: -17.83 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.87 Total: 46.51 kcal Total: -67.48 3.19 -64.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087287226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.814 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds