Wall clock time and date at job start Wed Apr 1 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 113.30844 * 2 1 4 4 C 1.55776 * 114.08583 * 132.79245 * 2 1 3 5 5 H 1.08999 * 114.28577 * 323.03282 * 4 2 1 6 6 N 1.46498 * 114.12412 * 190.48792 * 4 2 1 7 7 C 1.34778 * 119.99792 * 161.62539 * 6 4 2 8 8 O 1.21285 * 119.99820 * 359.72693 * 7 6 4 9 9 C 1.50695 * 119.99947 * 179.72741 * 7 6 4 10 10 C 1.50704 * 109.47005 * 179.97438 * 9 7 6 11 11 C 1.38235 * 120.00134 * 269.72203 * 10 9 7 12 12 C 1.38236 * 120.00202 * 179.76756 * 11 10 9 13 13 C 1.38231 * 119.99492 * 0.48641 * 12 11 10 14 14 C 1.38231 * 120.00641 * 359.79043 * 13 12 11 15 15 C 1.38233 * 119.99558 * 359.95754 * 14 13 12 16 16 C 1.50004 * 83.86546 * 76.76812 * 4 2 1 17 17 H 1.08998 * 112.50003 * 283.88482 * 16 4 2 18 18 C 1.51197 * 126.17473 * 140.38614 * 16 4 2 19 19 C 1.54096 * 106.19464 * 198.56866 * 18 16 4 20 20 C 1.52499 * 112.66886 * 55.43501 * 19 18 16 21 21 N 1.48404 * 111.87372 * 313.21307 * 20 19 18 22 22 C 1.36939 * 123.16920 * 231.82010 * 21 20 19 23 23 H 1.07998 * 120.00274 * 153.32382 * 22 21 20 24 24 C 1.38816 * 119.99525 * 333.32281 * 22 21 20 25 25 N 1.31622 * 120.00102 * 348.85037 * 24 22 21 26 26 Si 1.86803 * 119.99522 * 168.85521 * 24 22 21 27 27 H 1.48505 * 109.47294 * 60.00070 * 26 24 22 28 28 H 1.48505 * 109.46615 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46876 * 299.99625 * 26 24 22 30 30 C 1.46256 * 112.70242 * 52.47782 * 21 20 19 31 31 H 1.09002 * 113.59304 * 58.71812 * 30 21 20 32 32 H 1.08993 * 109.47150 * 278.22546 * 1 2 3 33 33 H 1.09001 * 109.47097 * 38.23099 * 1 2 3 34 34 H 1.09005 * 109.47192 * 158.22501 * 1 2 3 35 35 H 1.08997 * 109.47162 * 173.28952 * 3 2 1 36 36 H 1.09008 * 109.46979 * 293.28777 * 3 2 1 37 37 H 1.08994 * 109.47138 * 53.28445 * 3 2 1 38 38 H 0.96996 * 120.00282 * 341.35448 * 6 4 2 39 39 H 1.08999 * 109.47006 * 299.99640 * 9 7 6 40 40 H 1.09001 * 109.47277 * 60.00219 * 9 7 6 41 41 H 1.08006 * 119.99952 * 0.02562 * 11 10 9 42 42 H 1.07992 * 120.00077 * 180.25905 * 12 11 10 43 43 H 1.08000 * 119.99810 * 179.76917 * 13 12 11 44 44 H 1.07996 * 120.00712 * 179.97438 * 14 13 12 45 45 H 1.08011 * 120.00155 * 179.97438 * 15 14 13 46 46 H 1.08999 * 110.10382 * 317.73585 * 18 16 4 47 47 H 1.08994 * 110.10318 * 79.28554 * 18 16 4 48 48 H 1.08998 * 108.84734 * 176.25772 * 19 18 16 49 49 H 1.08994 * 108.84120 * 294.61649 * 19 18 16 50 50 H 1.09004 * 108.99980 * 73.82793 * 20 19 18 51 51 H 1.09001 * 108.99824 * 192.59250 * 20 19 18 52 52 H 0.96997 * 119.99595 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1657 -0.9661 1.0436 5 1 1.6240 -1.0258 1.9875 6 7 3.6103 -0.7944 1.2163 7 6 4.2198 -1.2794 2.3163 8 8 3.5715 -1.8536 3.1653 9 6 5.7068 -1.1081 2.4911 10 6 6.1348 -1.7341 3.7934 11 6 6.1508 -0.9788 4.9511 12 6 6.5388 -1.5542 6.1466 13 6 6.9205 -2.8823 6.1825 14 6 6.9101 -3.6361 5.0239 15 6 6.5170 -3.0621 3.8294 16 6 1.7887 -2.0267 0.0521 17 1 0.7224 -2.2522 0.0678 18 6 2.6164 -3.2364 -0.3189 19 6 2.0607 -3.7411 -1.6646 20 6 2.0561 -2.6607 -2.7409 21 7 1.4974 -1.3813 -2.2376 22 6 0.4961 -0.6987 -2.8753 23 1 -0.1615 -0.0534 -2.3118 24 6 0.3263 -0.8362 -4.2462 25 7 1.2480 -1.4398 -4.9663 26 14 -1.2105 -0.1646 -5.0689 27 1 -1.2930 1.3008 -4.8424 28 1 -1.1502 -0.4369 -6.5275 29 1 -2.4093 -0.8232 -4.4910 30 6 2.1420 -0.9300 -1.0048 31 1 3.2172 -0.7811 -1.1039 32 1 -0.3633 0.1470 1.0170 33 1 -0.3633 0.8073 -0.6360 34 1 -0.3634 -0.9544 -0.3812 35 1 3.2165 1.3350 0.1201 36 1 1.9060 1.8996 -0.9440 37 1 1.7150 1.9819 0.8237 38 1 4.1288 -0.3351 0.5373 39 1 6.2279 -1.5933 1.6658 40 1 5.9515 -0.0460 2.5012 41 1 5.8561 0.0599 4.9223 42 1 6.5473 -0.9652 7.0517 43 1 7.2272 -3.3309 7.1158 44 1 7.2087 -4.6736 5.0519 45 1 6.5092 -3.6509 2.9239 46 1 3.6637 -2.9545 -0.4281 47 1 2.5143 -4.0084 0.4437 48 1 2.6717 -4.5763 -2.0069 49 1 1.0400 -4.0926 -1.5144 50 1 3.0785 -2.4927 -3.0794 51 1 1.4563 -3.0026 -3.5844 52 1 1.1295 -1.5355 -5.9242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087293168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:53 Heat of formation + Delta-G solvation = 56.363977 kcal Electronic energy + Delta-G solvation = -31061.105812 eV Core-core repulsion = 27220.585120 eV Total energy + Delta-G solvation = -3840.520692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.20707 -39.68264 -38.33165 -35.24348 -33.33800 -33.02083 -32.67182 -30.99150 -30.15966 -29.35230 -27.88745 -27.00434 -25.76743 -24.48770 -22.69149 -22.37946 -22.01908 -20.56071 -20.30979 -19.13638 -18.20181 -17.02624 -16.89722 -16.62539 -15.66085 -15.55994 -14.99645 -14.83889 -14.50849 -14.04545 -14.00825 -13.78531 -13.72502 -13.51333 -13.34981 -13.13986 -12.77092 -12.56761 -12.51716 -12.39476 -12.15419 -12.01114 -11.76921 -11.33085 -11.25125 -11.14123 -11.11142 -11.07008 -10.84716 -10.64453 -10.40349 -10.24914 -10.06024 -9.89197 -9.88214 -9.74749 -9.26871 -9.00239 -8.86344 -8.81080 -8.63745 -8.40372 -6.56307 -5.75232 -3.20166 1.22728 1.32104 2.77128 3.25709 3.36633 3.42691 3.43128 3.77751 4.47550 4.52096 4.68749 4.72366 4.88469 4.97209 4.99147 5.00480 5.11581 5.21553 5.29277 5.32072 5.40606 5.46464 5.52895 5.57237 5.77485 5.85938 5.87990 5.91925 5.93181 6.00696 6.03943 6.05837 6.28763 6.29956 6.33860 6.37297 6.40022 6.40288 6.48527 6.50950 6.59351 6.62009 6.66780 6.75978 6.82068 6.89474 6.91701 7.05293 7.16396 7.43302 7.68172 7.71691 7.81296 8.39326 8.41459 9.17997 9.82940 10.51189 11.31879 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.002693 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.368022 B =10393.824426 C =11013.743905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.069 4.069 3 C -0.133 4.133 4 C 0.142 3.858 5 H 0.092 0.908 6 N -0.704 5.704 7 C 0.516 3.484 8 O -0.534 6.534 9 C -0.106 4.106 10 C -0.061 4.061 11 C -0.106 4.106 12 C -0.121 4.121 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.170 4.170 17 H 0.099 0.901 18 C -0.082 4.082 19 C -0.136 4.136 20 C 0.164 3.836 21 N -0.571 5.571 22 C -0.239 4.239 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.909 5.909 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.284 1.284 30 C 0.147 3.853 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.400 0.600 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.046 0.954 49 H 0.049 0.951 50 H 0.012 0.988 51 H 0.093 0.907 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 0.632 16.488 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.190 4.190 4 C 0.037 3.963 5 H 0.110 0.890 6 N -0.356 5.356 7 C 0.302 3.698 8 O -0.410 6.410 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.124 4.124 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.123 4.123 16 C -0.191 4.191 17 H 0.117 0.883 18 C -0.120 4.120 19 C -0.175 4.175 20 C 0.039 3.961 21 N -0.293 5.293 22 C -0.368 4.368 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.554 5.554 26 Si 0.731 3.269 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.211 1.211 30 C 0.039 3.961 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.236 0.764 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.030 0.970 51 H 0.111 0.889 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.070 0.217 16.843 19.625 hybrid contribution -0.430 0.494 -1.035 1.225 sum 9.639 0.712 15.808 18.529 Atomic orbital electron populations 1.21650 0.91966 1.03817 0.99995 1.21891 0.96638 0.93388 0.95124 1.21671 0.99432 0.96136 1.01761 1.21512 0.80175 0.97030 0.97628 0.88965 1.45749 1.08765 1.58754 1.22313 1.20392 0.89337 0.78594 0.81487 1.90715 1.66563 1.41472 1.42257 1.20710 0.93624 1.03171 0.97061 1.19285 0.98607 0.94177 0.94036 1.20979 0.99347 0.99816 0.92284 1.21078 0.99773 0.95374 0.97667 1.21117 1.00474 0.94449 0.98155 1.21095 1.00214 0.99726 0.92755 1.21013 0.98655 0.94285 0.98298 1.23302 1.00845 0.96248 0.98693 0.88263 1.21002 0.98117 0.96484 0.96399 1.22108 0.99737 0.99301 0.96336 1.20872 0.97201 0.83913 0.94130 1.44165 1.39380 1.19565 1.26146 1.19264 1.05145 1.23171 0.89202 0.90605 1.25134 0.97833 1.00594 0.96388 1.69936 1.32821 1.47060 1.05590 0.86392 0.83194 0.78861 0.78454 1.20997 1.21742 1.21063 1.21968 0.93925 0.92847 0.87333 0.93648 0.93909 0.91855 0.90467 0.93443 0.91830 0.93227 0.76401 0.87910 0.88029 0.86302 0.86228 0.86337 0.86170 0.86181 0.93336 0.94150 0.93533 0.93253 0.97027 0.88935 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 7.25 37.16 0.27 -1.67 16 2 C -0.07 -1.13 1.38 -159.15 -0.22 -1.35 16 3 C -0.13 -1.91 9.10 37.16 0.34 -1.57 16 4 C 0.14 2.22 3.90 -71.83 -0.28 1.94 16 5 H 0.09 1.54 7.60 -51.93 -0.39 1.14 16 6 N -0.70 -9.37 4.31 -57.66 -0.25 -9.61 16 7 C 0.52 7.04 7.82 -10.99 -0.09 6.96 16 8 O -0.53 -9.45 15.71 5.55 0.09 -9.36 16 9 C -0.11 -1.05 5.83 -29.04 -0.17 -1.22 16 10 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 11 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 12 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 13 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 14 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 15 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 16 C -0.17 -3.00 2.99 -95.82 -0.29 -3.28 16 17 H 0.10 1.91 6.11 -51.93 -0.32 1.59 16 18 C -0.08 -1.45 5.91 -27.07 -0.16 -1.61 16 19 C -0.14 -2.61 5.90 -26.42 -0.16 -2.77 16 20 C 0.16 3.80 5.29 -3.25 -0.02 3.78 16 21 N -0.57 -13.34 2.83 -168.74 -0.48 -13.82 16 22 C -0.24 -6.10 9.03 -15.06 -0.14 -6.24 16 23 H 0.08 1.87 5.11 -52.49 -0.27 1.60 16 24 C 0.00 -0.04 5.16 -17.43 -0.09 -0.13 16 25 N -0.91 -25.66 10.93 55.49 0.61 -25.05 16 26 Si 0.90 21.22 29.57 -169.99 -5.03 16.19 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.15 2.81 2.98 -71.65 -0.21 2.59 16 31 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.08 7.05 -51.93 -0.37 0.71 16 34 H 0.08 1.44 5.57 -51.93 -0.29 1.15 16 35 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 4.68 6.17 -40.82 -0.25 4.43 16 39 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 46 H 0.05 0.83 7.91 -51.93 -0.41 0.42 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 52 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -30.85 397.40 -11.03 -41.88 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.33 Total: 7.37 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.63 Total: -13.58 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.12 Total: -48.49 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.85 -11.03 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087293168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.243 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds