Wall clock time and date at job start Wed Apr 1 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.90333 * 2 1 4 4 C 1.53872 * 113.68435 * 131.42120 * 2 1 3 5 5 H 1.08999 * 113.64063 * 26.01803 * 4 2 1 6 6 N 1.46501 * 113.63663 * 255.04690 * 4 2 1 7 7 C 1.34776 * 120.00240 * 158.15102 * 6 4 2 8 8 O 1.21282 * 119.99831 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00508 * 179.97438 * 7 6 4 10 10 C 1.50694 * 109.47661 * 179.97438 * 9 7 6 11 11 C 1.38232 * 120.00073 * 269.72963 * 10 9 7 12 12 C 1.38240 * 119.99885 * 179.76534 * 11 10 9 13 13 C 1.38233 * 119.99897 * 0.49939 * 12 11 10 14 14 C 1.38240 * 120.00021 * 359.75482 * 13 12 11 15 15 C 1.38227 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.54149 * 86.93776 * 140.53620 * 4 2 1 17 17 H 1.09000 * 114.25065 * 218.28533 * 16 4 2 18 18 C 1.53065 * 111.68964 * 88.01723 * 16 4 2 19 19 C 1.53020 * 109.41166 * 213.60349 * 18 16 4 20 20 C 1.52938 * 109.02513 * 64.58749 * 19 18 16 21 21 N 1.45901 * 109.88353 * 302.83084 * 20 19 18 22 22 C 1.36942 * 118.41072 * 219.21289 * 21 20 19 23 23 H 1.08008 * 119.99497 * 153.22890 * 22 21 20 24 24 C 1.38805 * 120.00466 * 333.22903 * 22 21 20 25 25 N 1.31622 * 119.99511 * 344.02473 * 24 22 21 26 26 Si 1.86796 * 120.00215 * 164.02284 * 24 22 21 27 27 H 1.48501 * 109.47059 * 84.89003 * 26 24 22 28 28 H 1.48506 * 109.46959 * 204.88554 * 26 24 22 29 29 H 1.48495 * 109.47384 * 324.88407 * 26 24 22 30 30 C 1.45093 * 123.10547 * 39.13219 * 21 20 19 31 31 H 1.08998 * 111.58540 * 203.66712 * 30 21 20 32 32 H 1.09000 * 109.47326 * 308.08932 * 1 2 3 33 33 H 1.09005 * 109.46844 * 68.08449 * 1 2 3 34 34 H 1.08998 * 109.47386 * 188.08397 * 1 2 3 35 35 H 1.09008 * 109.46983 * 203.43556 * 3 2 1 36 36 H 1.08997 * 109.47397 * 323.43292 * 3 2 1 37 37 H 1.08994 * 109.47489 * 83.43529 * 3 2 1 38 38 H 0.97004 * 119.99910 * 338.14497 * 6 4 2 39 39 H 1.09000 * 109.46757 * 300.00020 * 9 7 6 40 40 H 1.09006 * 109.47045 * 59.99600 * 9 7 6 41 41 H 1.07995 * 119.99980 * 359.97438 * 11 10 9 42 42 H 1.08003 * 119.99701 * 180.22873 * 12 11 10 43 43 H 1.07996 * 119.99919 * 179.72673 * 13 12 11 44 44 H 1.08001 * 119.99579 * 179.97438 * 14 13 12 45 45 H 1.08002 * 120.00564 * 179.97438 * 15 14 13 46 46 H 1.09006 * 109.47657 * 93.61977 * 18 16 4 47 47 H 1.08993 * 109.49036 * 333.59446 * 18 16 4 48 48 H 1.08993 * 109.55667 * 184.48195 * 19 18 16 49 49 H 1.09003 * 109.55989 * 304.69490 * 19 18 16 50 50 H 1.09005 * 109.39865 * 62.83664 * 20 19 18 51 51 H 1.08993 * 109.40284 * 182.57956 * 20 19 18 52 52 H 0.97004 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1481 -0.9323 1.0567 5 1 1.5020 -1.7640 1.3373 6 7 2.7012 -0.2238 2.2136 7 6 2.8673 -0.8711 3.3840 8 8 2.5585 -2.0400 3.4796 9 6 3.4368 -0.1425 4.5739 10 6 3.5183 -1.0840 5.7477 11 6 2.4533 -1.1922 6.6222 12 6 2.5262 -2.0595 7.6962 13 6 3.6681 -2.8109 7.9015 14 6 4.7352 -2.6988 7.0299 15 6 4.6602 -1.8358 5.9528 16 6 3.2033 -1.3002 -0.0051 17 1 3.4938 -2.3508 -0.0024 18 6 4.3963 -0.3417 0.0271 19 6 4.9391 -0.1576 -1.3917 20 6 3.8734 0.5278 -2.2482 21 7 2.6453 -0.2598 -2.2363 22 6 1.9313 -0.3709 -3.3996 23 1 1.3060 -1.2352 -3.5689 24 6 2.0111 0.6270 -4.3610 25 7 2.5035 1.8063 -4.0461 26 14 1.4197 0.2964 -6.1018 27 1 -0.0444 0.5319 -6.1803 28 1 2.1187 1.2074 -7.0435 29 1 1.7147 -1.1128 -6.4656 30 6 2.1462 -0.9317 -1.0512 31 1 1.4960 -1.7679 -1.3082 32 1 -0.3634 0.6339 0.8088 33 1 -0.3633 0.3836 -0.9535 34 1 -0.3634 -1.0174 0.1445 35 1 3.1355 1.3771 -0.4088 36 1 1.5066 2.0653 -0.6122 37 1 2.1587 1.7898 1.0208 38 1 2.9479 0.7112 2.1372 39 1 4.4343 0.2243 4.3320 40 1 2.7918 0.6989 4.8275 41 1 1.5629 -0.6016 6.4645 42 1 1.6926 -2.1467 8.3774 43 1 3.7268 -3.4852 8.7431 44 1 5.6276 -3.2856 7.1906 45 1 5.4940 -1.7478 5.2720 46 1 5.1778 -0.7554 0.6645 47 1 4.0774 0.6226 0.4223 48 1 5.8363 0.4606 -1.3617 49 1 5.1807 -1.1307 -1.8192 50 1 3.6691 1.5202 -1.8463 51 1 4.2362 0.6207 -3.2718 52 1 2.5590 2.5039 -4.7179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087293169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:56 Heat of formation + Delta-G solvation = 29.357329 kcal Electronic energy + Delta-G solvation = -31074.774557 eV Core-core repulsion = 27233.082769 eV Total energy + Delta-G solvation = -3841.691788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.36307 -40.62049 -39.35643 -36.84755 -34.49362 -34.42279 -33.63066 -32.08723 -31.71595 -31.44902 -28.72113 -28.31007 -27.19383 -25.95129 -24.04837 -23.42494 -23.17637 -22.10302 -21.15594 -20.74599 -19.11693 -18.71816 -17.98212 -17.65664 -17.03003 -16.61359 -16.52159 -16.26639 -15.87351 -15.73065 -15.38204 -15.16111 -14.82006 -14.72773 -14.27167 -14.20107 -14.00313 -13.86728 -13.77659 -13.49927 -13.30654 -13.09632 -12.97188 -12.87235 -12.78379 -12.76630 -12.48325 -12.40250 -12.11537 -11.96297 -11.95900 -11.81705 -11.53265 -11.41071 -11.16407 -10.95784 -10.89777 -10.65428 -10.30306 -9.78380 -9.74661 -9.56923 -8.52691 -7.79688 -5.24003 0.47380 0.57235 1.45549 1.48186 1.55683 1.74025 2.30822 2.54929 2.99610 3.32347 3.57707 3.69110 3.75813 3.79698 3.92891 4.00793 4.03655 4.13630 4.21176 4.30301 4.32375 4.43316 4.44939 4.51317 4.62974 4.65212 4.69052 4.70701 4.75037 4.82625 4.83320 4.87225 4.97080 5.05193 5.12340 5.13658 5.17646 5.18721 5.21409 5.31345 5.37983 5.42863 5.57951 5.60457 5.62194 5.63325 5.67248 5.72655 5.73456 5.76482 6.00955 6.18163 6.45279 6.69006 7.26083 7.37268 8.03929 8.38688 9.22753 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027122 B = 0.002513 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.143446 B =11137.609397 C =11474.495331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C -0.130 4.130 4 C 0.148 3.852 5 H 0.094 0.906 6 N -0.702 5.702 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.098 4.098 10 C -0.078 4.078 11 C -0.123 4.123 12 C -0.131 4.131 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.123 4.123 16 C -0.127 4.127 17 H 0.064 0.936 18 C -0.092 4.092 19 C -0.137 4.137 20 C 0.188 3.812 21 N -0.580 5.580 22 C -0.266 4.266 23 H 0.056 0.944 24 C -0.039 4.039 25 N -0.923 5.923 26 Si 0.954 3.046 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.279 1.279 30 C 0.169 3.831 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.411 0.589 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.026 0.974 51 H 0.028 0.972 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -1.621 22.281 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.109 4.109 3 C -0.187 4.187 4 C 0.042 3.958 5 H 0.112 0.888 6 N -0.354 5.354 7 C 0.302 3.698 8 O -0.461 6.461 9 C -0.138 4.138 10 C -0.079 4.079 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.141 4.141 16 C -0.148 4.148 17 H 0.083 0.917 18 C -0.129 4.129 19 C -0.175 4.175 20 C 0.063 3.937 21 N -0.299 5.299 22 C -0.397 4.397 23 H 0.074 0.926 24 C -0.235 4.235 25 N -0.569 5.569 26 Si 0.783 3.217 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.204 1.204 30 C 0.059 3.941 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.047 0.953 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.178 -2.287 22.233 22.738 hybrid contribution -0.563 0.180 -1.711 1.810 sum 3.615 -2.108 20.522 20.945 Atomic orbital electron populations 1.21563 0.94659 1.01076 1.00602 1.22823 0.95380 0.96405 0.96262 1.21908 1.02756 0.93797 1.00193 1.22309 0.94974 0.95287 0.83233 0.88774 1.45970 1.64278 1.15259 1.09893 1.21096 0.77320 0.86998 0.84435 1.90699 1.52093 1.18511 1.84789 1.20758 1.05293 0.98114 0.89616 1.19529 0.94707 0.98086 0.95569 1.21255 0.98132 0.99536 0.95193 1.21414 0.98788 0.96528 0.98179 1.21457 0.93643 0.99754 1.00150 1.21411 0.99698 0.98755 0.95075 1.21255 0.98170 0.96587 0.98101 1.23201 0.96201 0.99158 0.96233 0.91706 1.21413 0.95748 0.99568 0.96183 1.21956 0.98701 1.00356 0.96508 1.20412 0.84171 0.92300 0.96789 1.43315 1.22909 1.58025 1.05610 1.19416 1.23671 1.01371 0.95247 0.92640 1.25542 1.01297 0.94716 1.01930 1.70174 1.51134 1.02471 1.33121 0.85512 0.77592 0.77142 0.81454 1.21387 1.21927 1.20440 1.21253 0.93904 0.93709 0.85203 0.92339 0.92178 0.94563 0.92855 0.89571 0.95099 0.91427 0.74954 0.85501 0.85489 0.85395 0.84429 0.84251 0.84497 0.85491 0.91637 0.89615 0.90762 0.93817 0.95653 0.95339 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 9.10 71.98 0.66 -3.36 16 2 C -0.10 -3.52 1.35 -51.76 -0.07 -3.59 16 3 C -0.13 -4.28 7.02 71.98 0.51 -3.77 16 4 C 0.15 4.44 3.58 45.67 0.16 4.60 16 5 H 0.09 3.11 7.42 -2.39 -0.02 3.09 16 6 N -0.70 -16.42 4.32 -439.32 -1.90 -18.32 16 7 C 0.51 12.59 7.82 87.66 0.69 13.28 16 8 O -0.58 -19.73 15.68 -3.04 -0.05 -19.78 16 9 C -0.10 -1.60 5.83 29.10 0.17 -1.43 16 10 C -0.08 -1.58 4.37 -19.87 -0.09 -1.67 16 11 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 12 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 13 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 14 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 15 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 16 C -0.13 -4.21 4.29 -10.31 -0.04 -4.26 16 17 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.09 -2.73 4.65 30.62 0.14 -2.59 16 19 C -0.14 -4.80 6.03 30.58 0.18 -4.61 16 20 C 0.19 8.48 4.00 86.47 0.35 8.83 16 21 N -0.58 -27.41 2.67 -681.81 -1.82 -29.22 16 22 C -0.27 -14.30 9.45 84.03 0.79 -13.51 16 23 H 0.06 3.00 7.83 -2.91 -0.02 2.98 16 24 C -0.04 -2.11 4.86 84.86 0.41 -1.69 16 25 N -0.92 -52.03 11.06 21.65 0.24 -51.79 16 26 Si 0.95 44.66 29.58 68.60 2.03 46.69 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 30 C 0.17 6.72 3.54 45.45 0.16 6.88 16 31 H 0.06 2.47 7.92 -2.39 -0.02 2.45 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 1.65 8.02 -2.39 -0.02 1.63 16 35 H 0.09 3.03 1.95 -2.38 0.00 3.02 16 36 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 37 H 0.07 1.66 6.28 -2.39 -0.02 1.64 16 38 H 0.41 7.73 5.61 -92.71 -0.52 7.21 16 39 H 0.13 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.13 1.41 8.08 -2.38 -0.02 1.39 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.09 2.34 3.76 -2.39 -0.01 2.33 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.03 1.22 5.63 -2.38 -0.01 1.20 16 51 H 0.03 1.48 6.57 -2.39 -0.02 1.47 16 52 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -67.53 392.72 4.03 -63.50 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.40 Total: 26.62 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 5.12 Total: -17.69 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.48 Total: -99.34 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.53 4.03 -63.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087293169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.860 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds