Wall clock time and date at job start Wed Apr 1 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 112.90587 * 2 1 4 4 C 1.53877 * 113.68383 * 228.45226 * 2 1 3 5 5 H 1.09006 * 113.63632 * 104.95522 * 4 2 1 6 6 N 1.46505 * 113.63776 * 333.98045 * 4 2 1 7 7 C 1.34772 * 119.99969 * 158.14707 * 6 4 2 8 8 O 1.21287 * 119.99848 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00118 * 179.97438 * 7 6 4 10 10 C 1.50701 * 109.46997 * 180.02562 * 9 7 6 11 11 C 1.38238 * 119.99940 * 269.72457 * 10 9 7 12 12 C 1.38237 * 119.99796 * 179.76788 * 11 10 9 13 13 C 1.38233 * 120.00032 * 0.51253 * 12 11 10 14 14 C 1.38236 * 119.99940 * 359.74612 * 13 12 11 15 15 C 1.38233 * 120.00027 * 90.00498 * 10 9 7 16 16 C 1.54146 * 86.93641 * 219.46719 * 4 2 1 17 17 H 1.09001 * 114.73487 * 141.26475 * 16 4 2 18 18 C 1.53062 * 111.69191 * 271.97683 * 16 4 2 19 19 C 1.53014 * 109.41470 * 146.40327 * 18 16 4 20 20 C 1.52940 * 108.92970 * 295.35520 * 19 18 16 21 21 N 1.45894 * 109.89307 * 57.34288 * 20 19 18 22 22 C 1.36932 * 118.48428 * 140.63801 * 21 20 19 23 23 H 1.08004 * 120.00021 * 206.38364 * 22 21 20 24 24 C 1.38813 * 120.00288 * 26.38665 * 22 21 20 25 25 N 1.31618 * 119.99546 * 13.95508 * 24 22 21 26 26 Si 1.86798 * 120.00197 * 193.95191 * 24 22 21 27 27 H 1.48507 * 109.46873 * 60.00227 * 26 24 22 28 28 H 1.48499 * 109.47223 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47335 * 300.00175 * 26 24 22 30 30 C 1.45088 * 123.03030 * 320.66384 * 21 20 19 31 31 H 1.09002 * 112.25800 * 157.08717 * 30 21 20 32 32 H 1.09000 * 109.46821 * 288.57862 * 1 2 3 33 33 H 1.09000 * 109.46718 * 48.57352 * 1 2 3 34 34 H 1.08992 * 109.47276 * 168.57661 * 1 2 3 35 35 H 1.09003 * 109.47299 * 159.54749 * 3 2 1 36 36 H 1.09006 * 109.47144 * 279.54575 * 3 2 1 37 37 H 1.09000 * 109.47121 * 39.54273 * 3 2 1 38 38 H 0.96999 * 119.99712 * 338.14514 * 6 4 2 39 39 H 1.08992 * 109.47219 * 300.00484 * 9 7 6 40 40 H 1.09002 * 109.46381 * 60.00499 * 9 7 6 41 41 H 1.08008 * 119.99885 * 0.02562 * 11 10 9 42 42 H 1.08005 * 119.99841 * 180.23433 * 12 11 10 43 43 H 1.07994 * 119.99989 * 179.72257 * 13 12 11 44 44 H 1.07995 * 120.00030 * 179.97438 * 14 13 12 45 45 H 1.07998 * 120.00058 * 0.02562 * 15 10 9 46 46 H 1.09001 * 109.48104 * 266.38758 * 18 16 4 47 47 H 1.09002 * 109.47909 * 26.40766 * 18 16 4 48 48 H 1.09010 * 109.55992 * 55.18545 * 19 18 16 49 49 H 1.08999 * 109.56345 * 175.51732 * 19 18 16 50 50 H 1.09001 * 109.40125 * 177.47223 * 20 19 18 51 51 H 1.08997 * 109.40045 * 297.29795 * 20 19 18 52 52 H 0.97006 * 119.99561 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1481 -0.9346 -1.0546 5 1 2.5597 -0.4094 -1.9166 6 7 1.2796 -2.0534 -1.4293 7 6 1.4616 -2.6827 -2.6071 8 8 2.3448 -2.3232 -3.3566 9 6 0.5686 -3.8339 -2.9923 10 6 0.9791 -4.3574 -4.3445 11 6 0.4057 -3.8380 -5.4900 12 6 0.7858 -4.3149 -6.7306 13 6 1.7315 -5.3187 -6.8251 14 6 2.3010 -5.8418 -5.6793 15 6 1.9248 -5.3612 -4.4390 16 6 3.2033 -1.3002 0.0080 17 1 3.4938 -2.3508 0.0197 18 6 4.3964 -0.3421 -0.0263 19 6 4.9393 -0.1549 1.3920 20 6 3.8727 0.5339 2.2447 21 7 2.6454 -0.2549 2.2369 22 6 1.9318 -0.3640 3.4005 23 1 1.3028 -1.2256 3.5695 24 6 2.0169 0.6327 4.3629 25 7 2.5507 1.7968 4.0593 26 14 1.3736 0.3218 6.0889 27 1 2.1049 -0.8218 6.6912 28 1 1.5811 1.5345 6.9204 29 1 -0.0760 0.0052 6.0274 30 6 2.1462 -0.9294 1.0533 31 1 1.4851 -1.7603 1.2995 32 1 -0.3633 0.3274 0.9741 33 1 -0.3633 0.6800 -0.7706 34 1 -0.3633 -1.0072 -0.2035 35 1 3.1539 1.3693 0.3591 36 1 2.1099 1.8103 -1.0135 37 1 1.5369 2.0524 0.6543 38 1 0.5735 -2.3411 -0.8297 39 1 0.6606 -4.6286 -2.2521 40 1 -0.4660 -3.4931 -3.0329 41 1 -0.3363 -3.0566 -5.4159 42 1 0.3405 -3.9064 -7.6258 43 1 2.0251 -5.6944 -7.7941 44 1 3.0395 -6.6263 -5.7531 45 1 2.3692 -5.7705 -3.5438 46 1 5.1778 -0.7571 -0.6629 47 1 4.0774 0.6215 -0.4238 48 1 5.1787 -1.1273 1.8224 49 1 5.8366 0.4631 1.3607 50 1 4.2344 0.6307 3.2683 51 1 3.6678 1.5241 1.8379 52 1 2.6105 2.4932 4.7320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087293170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:00 Heat of formation + Delta-G solvation = 29.271916 kcal Electronic energy + Delta-G solvation = -30945.425724 eV Core-core repulsion = 27103.730232 eV Total energy + Delta-G solvation = -3841.695492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.32768 -40.65583 -39.39610 -36.92880 -34.81980 -34.08190 -33.56506 -32.21827 -31.72323 -31.32767 -28.75847 -28.21329 -27.14791 -25.94134 -24.07514 -23.43298 -23.08326 -22.36375 -21.22993 -20.79079 -19.10729 -18.68484 -17.97205 -17.68185 -17.11213 -16.60940 -16.52373 -16.09901 -15.80475 -15.71942 -15.47595 -15.20022 -14.90015 -14.60277 -14.23721 -14.21759 -14.06535 -13.86608 -13.71849 -13.53906 -13.31663 -13.17676 -12.97870 -12.87765 -12.79555 -12.75568 -12.54346 -12.40187 -12.10337 -11.98760 -11.95275 -11.82502 -11.54891 -11.38787 -11.11453 -10.97527 -10.88611 -10.60900 -10.30363 -9.81611 -9.75510 -9.58415 -8.52449 -7.77071 -5.22726 0.46240 0.56493 1.48125 1.50488 1.55855 1.70073 2.23002 2.55267 2.97815 3.35178 3.58048 3.71162 3.73870 3.78625 3.98743 3.99782 4.05297 4.08501 4.20370 4.29235 4.31819 4.43015 4.44016 4.50913 4.61172 4.63579 4.69570 4.71191 4.78046 4.81935 4.82638 4.92710 4.95984 5.02535 5.12195 5.12766 5.16454 5.17431 5.20642 5.31453 5.34829 5.43212 5.55093 5.58741 5.60501 5.65880 5.66591 5.71643 5.73161 5.79542 6.00190 6.17344 6.46580 6.64412 7.27157 7.33514 8.04761 8.41216 9.25668 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.002560 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.823767 B =10933.371215 C =11210.838096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.128 4.128 4 C 0.146 3.854 5 H 0.083 0.917 6 N -0.700 5.700 7 C 0.515 3.485 8 O -0.578 6.578 9 C -0.097 4.097 10 C -0.079 4.079 11 C -0.122 4.122 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.124 4.124 16 C -0.123 4.123 17 H 0.070 0.930 18 C -0.104 4.104 19 C -0.133 4.133 20 C 0.188 3.812 21 N -0.582 5.582 22 C -0.263 4.263 23 H 0.064 0.936 24 C -0.044 4.044 25 N -0.929 5.929 26 Si 0.957 3.043 27 H -0.283 1.283 28 H -0.299 1.299 29 H -0.277 1.277 30 C 0.176 3.824 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.030 0.970 38 H 0.412 0.588 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.126 0.874 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.033 0.967 51 H 0.019 0.981 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -12.666 -17.753 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 C -0.185 4.185 4 C 0.040 3.960 5 H 0.101 0.899 6 N -0.351 5.351 7 C 0.303 3.697 8 O -0.457 6.457 9 C -0.136 4.136 10 C -0.080 4.080 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.145 4.145 17 H 0.089 0.911 18 C -0.142 4.142 19 C -0.172 4.172 20 C 0.063 3.937 21 N -0.300 5.300 22 C -0.393 4.393 23 H 0.082 0.918 24 C -0.239 4.239 25 N -0.575 5.575 26 Si 0.787 3.213 27 H -0.209 1.209 28 H -0.225 1.225 29 H -0.203 1.203 30 C 0.067 3.933 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.250 0.750 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.144 0.856 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.037 0.963 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.658 -12.278 -18.161 22.225 hybrid contribution -0.483 0.313 1.679 1.775 sum -4.141 -11.966 -16.482 20.784 Atomic orbital electron populations 1.21531 0.93972 1.01692 1.00636 1.22848 0.96048 0.95723 0.96872 1.21905 1.02675 0.94393 0.99537 1.21878 0.91144 0.87700 0.95308 0.89913 1.45738 1.35676 1.33517 1.20208 1.21098 0.84463 0.83735 0.80374 1.90704 1.35531 1.67053 1.52418 1.20747 1.00675 0.96441 0.95783 1.19522 0.97434 0.96547 0.94477 1.21261 1.00605 0.99644 0.92535 1.21420 0.98125 0.97383 0.97946 1.21460 0.97030 0.97133 0.99304 1.21410 1.00291 1.00711 0.92521 1.21253 0.97049 0.97267 0.98602 1.23153 0.95535 0.99048 0.96724 0.91111 1.21532 0.96353 0.99653 0.96654 1.21926 0.98666 1.00490 0.96117 1.20398 0.84391 0.92069 0.96846 1.43369 1.22968 1.57683 1.06019 1.19470 1.23189 1.01631 0.95058 0.91786 1.25621 1.01342 0.94814 1.02160 1.70196 1.50418 1.03601 1.33299 0.85500 0.78406 0.76287 0.81140 1.20944 1.22519 1.20328 1.21481 0.93528 0.93533 0.84801 0.91050 0.94363 0.92828 0.91092 0.89879 0.92975 0.95058 0.74951 0.85598 0.85314 0.85322 0.84358 0.84197 0.84490 0.85585 0.91746 0.90380 0.93276 0.91214 0.94896 0.96329 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 8.96 71.98 0.65 -2.99 16 2 C -0.11 -3.74 1.34 -51.76 -0.07 -3.81 16 3 C -0.13 -4.79 7.33 71.98 0.53 -4.26 16 4 C 0.15 4.42 3.30 45.67 0.15 4.57 16 5 H 0.08 2.76 7.43 -2.38 -0.02 2.74 16 6 N -0.70 -16.76 4.74 -439.30 -2.08 -18.84 16 7 C 0.52 12.80 7.82 87.66 0.69 13.48 16 8 O -0.58 -19.67 15.68 -3.05 -0.05 -19.72 16 9 C -0.10 -1.60 5.83 29.10 0.17 -1.43 16 10 C -0.08 -1.61 4.37 -19.87 -0.09 -1.70 16 11 C -0.12 -2.40 9.70 22.27 0.22 -2.19 16 12 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 13 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 14 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 15 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 16 C -0.12 -4.11 4.12 -10.31 -0.04 -4.16 16 17 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.10 -3.50 5.17 30.62 0.16 -3.34 16 19 C -0.13 -4.98 6.04 30.58 0.18 -4.79 16 20 C 0.19 8.77 4.00 86.47 0.35 9.12 16 21 N -0.58 -27.24 2.67 -681.84 -1.82 -29.06 16 22 C -0.26 -13.73 9.48 84.03 0.80 -12.93 16 23 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 24 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 25 N -0.93 -52.99 10.91 21.65 0.24 -52.75 16 26 Si 0.96 44.04 29.58 68.60 2.03 46.07 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 30 C 0.18 6.64 3.39 45.45 0.15 6.79 16 31 H 0.07 2.63 7.87 -2.39 -0.02 2.61 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.67 5.85 -2.39 -0.01 1.66 16 35 H 0.08 3.29 1.99 -2.39 0.00 3.29 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 38 H 0.41 7.91 6.73 -92.71 -0.62 7.29 16 39 H 0.13 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.13 1.43 8.08 -2.39 -0.02 1.42 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.08 2.65 4.66 -2.39 -0.01 2.64 16 48 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.03 1.76 6.47 -2.39 -0.02 1.74 16 51 H 0.02 0.95 5.65 -2.39 -0.01 0.94 16 52 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -67.30 394.81 3.75 -63.55 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.30 Total: 28.92 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.14 Total: -18.18 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -3.67 Total: -100.65 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.30 3.75 -63.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087293170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.825 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds