Wall clock time and date at job start Wed Apr 1 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 113.19203 * 2 1 4 4 C 1.55783 * 114.08525 * 227.09672 * 2 1 3 5 5 H 1.08995 * 114.12472 * 169.50933 * 4 2 1 6 6 N 1.46498 * 114.12359 * 37.13414 * 4 2 1 7 7 C 1.34780 * 119.99648 * 155.00267 * 6 4 2 8 8 O 1.21281 * 120.00019 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99911 * 179.97438 * 7 6 4 10 10 C 1.50702 * 109.46987 * 180.02562 * 9 7 6 11 11 C 1.38235 * 119.99474 * 269.72182 * 10 9 7 12 12 C 1.38238 * 119.99534 * 179.76536 * 11 10 9 13 13 C 1.38236 * 120.00054 * 0.49226 * 12 11 10 14 14 C 1.38238 * 119.99700 * 359.78497 * 13 12 11 15 15 C 1.38229 * 120.00140 * 359.95943 * 14 13 12 16 16 C 1.49310 * 83.35745 * 283.98708 * 4 2 1 17 17 H 1.08998 * 112.95343 * 75.53872 * 16 4 2 18 18 C 1.51198 * 125.56211 * 217.71886 * 16 4 2 19 19 C 1.54085 * 106.20064 * 161.50063 * 18 16 4 20 20 C 1.52931 * 112.61319 * 304.41178 * 19 18 16 21 21 N 1.48407 * 111.63018 * 47.04874 * 20 19 18 22 22 C 1.36935 * 123.16896 * 128.12727 * 21 20 19 23 23 H 1.07999 * 119.99724 * 151.64194 * 22 21 20 24 24 C 1.38808 * 119.99795 * 331.36921 * 22 21 20 25 25 N 1.31618 * 120.00338 * 341.96710 * 24 22 21 26 26 Si 1.86802 * 119.99976 * 161.97073 * 24 22 21 27 27 H 1.48498 * 109.47145 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47355 * 119.99896 * 26 24 22 29 29 H 1.48497 * 109.47064 * 239.99869 * 26 24 22 30 30 C 1.45382 * 113.66384 * 307.85764 * 21 20 19 31 31 H 1.08996 * 112.09716 * 300.48774 * 30 21 20 32 32 H 1.08998 * 109.47232 * 281.07954 * 1 2 3 33 33 H 1.09003 * 109.47461 * 41.07828 * 1 2 3 34 34 H 1.09000 * 109.47021 * 161.07729 * 1 2 3 35 35 H 1.08994 * 109.47371 * 192.67473 * 3 2 1 36 36 H 1.09000 * 109.47200 * 312.67662 * 3 2 1 37 37 H 1.09003 * 109.46898 * 72.67607 * 3 2 1 38 38 H 0.96995 * 120.00335 * 334.99731 * 6 4 2 39 39 H 1.09003 * 109.46825 * 300.00162 * 9 7 6 40 40 H 1.08998 * 109.47229 * 59.99482 * 9 7 6 41 41 H 1.08001 * 120.00296 * 0.02562 * 11 10 9 42 42 H 1.07996 * 120.00105 * 180.25847 * 12 11 10 43 43 H 1.07993 * 120.00063 * 179.76512 * 13 12 11 44 44 H 1.08003 * 119.99429 * 179.97438 * 14 13 12 45 45 H 1.08004 * 119.99554 * 179.97438 * 15 14 13 46 46 H 1.09002 * 110.10145 * 280.67103 * 18 16 4 47 47 H 1.09009 * 110.10413 * 42.32676 * 18 16 4 48 48 H 1.09003 * 108.84232 * 65.38184 * 19 18 16 49 49 H 1.08999 * 108.84954 * 183.84622 * 19 18 16 50 50 H 1.08995 * 109.16653 * 286.47154 * 20 19 18 51 51 H 1.09005 * 109.07954 * 167.55979 * 20 19 18 52 52 H 0.96994 * 120.00267 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1325 1.4064 0.0000 4 6 2.1657 -0.9682 -1.0418 5 1 3.2405 -0.8406 -1.1706 6 7 1.4369 -1.0452 -2.3103 7 6 2.0823 -1.4053 -3.4374 8 8 3.2662 -1.6661 -3.4013 9 6 1.3326 -1.4851 -4.7422 10 6 2.2762 -1.9073 -5.8387 11 6 2.9637 -0.9526 -6.5645 12 6 3.8330 -1.3400 -7.5671 13 6 4.0070 -2.6817 -7.8507 14 6 3.3152 -3.6361 -7.1287 15 6 2.4499 -3.2489 -6.1226 16 6 1.7680 -2.0146 -0.0537 17 1 0.6986 -2.2251 -0.0648 18 6 2.5699 -3.2494 0.2902 19 6 2.0262 -3.7525 1.6413 20 6 2.0748 -2.6803 2.7307 21 7 1.5369 -1.3844 2.2472 22 6 0.5664 -0.6819 2.9102 23 1 0.5217 0.3935 2.8206 24 6 -0.3635 -1.3524 3.6928 25 7 -0.5497 -2.6453 3.5313 26 14 -1.3508 -0.4198 4.9754 27 1 -0.9562 1.0117 4.9591 28 1 -2.7987 -0.5381 4.6678 29 1 -1.0819 -0.9916 6.3192 30 6 2.1420 -0.9280 1.0066 31 1 3.2197 -0.7946 1.1008 32 1 -0.3633 0.1975 1.0085 33 1 -0.3634 0.7747 -0.6753 34 1 -0.3633 -0.9721 -0.3333 35 1 3.1971 1.3455 -0.2255 36 1 1.6353 2.0147 -0.7555 37 1 1.9943 1.8608 0.9811 38 1 0.4900 -0.8371 -2.3390 39 1 0.5278 -2.2152 -4.6547 40 1 0.9123 -0.5080 -4.9801 41 1 2.8248 0.0958 -6.3454 42 1 4.3732 -0.5943 -8.1314 43 1 4.6833 -2.9842 -8.6365 44 1 3.4509 -4.6844 -7.3506 45 1 1.9091 -3.9947 -5.5588 46 1 2.4314 -4.0116 -0.4766 47 1 3.6262 -2.9965 0.3821 48 1 0.9938 -4.0754 1.5071 49 1 2.6222 -4.6059 1.9649 50 1 3.1078 -2.5395 3.0484 51 1 1.4846 -3.0130 3.5846 52 1 -1.1991 -3.1139 4.0784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087293171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:06 Heat of formation + Delta-G solvation = 49.948832 kcal Electronic energy + Delta-G solvation = -30929.094325 eV Core-core repulsion = 27088.295451 eV Total energy + Delta-G solvation = -3840.798874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.99172 -39.68738 -38.35342 -35.25697 -33.24622 -32.93431 -32.72525 -30.97931 -30.25210 -29.30651 -27.80908 -27.10042 -25.70375 -24.36929 -22.67873 -22.43094 -21.72292 -20.56953 -20.02975 -19.16463 -18.33741 -16.94289 -16.88401 -16.50259 -15.79389 -15.60895 -15.13986 -14.59260 -14.44317 -14.06536 -13.92558 -13.88134 -13.51013 -13.40950 -13.21912 -13.02005 -12.74375 -12.66349 -12.46625 -12.39341 -12.11041 -11.72788 -11.56310 -11.28620 -11.25881 -11.15325 -11.10283 -11.01896 -10.89588 -10.72077 -10.42949 -10.25149 -10.08002 -9.96510 -9.71678 -9.50579 -9.32411 -8.99058 -8.89619 -8.77055 -8.50529 -8.38237 -6.56518 -5.78709 -3.19706 1.24404 1.33275 2.82159 3.34169 3.37173 3.44012 3.44881 3.82158 4.47232 4.54498 4.70742 4.78568 4.89641 4.98963 5.00216 5.06339 5.14352 5.25048 5.32672 5.33310 5.41982 5.45478 5.54211 5.63747 5.87772 5.89874 5.92722 5.94406 5.96518 6.12077 6.16854 6.18815 6.31893 6.35081 6.35819 6.40613 6.41144 6.50063 6.54139 6.56643 6.65340 6.70868 6.80668 6.83067 6.90678 6.95997 7.08468 7.13034 7.26756 7.49386 7.69522 7.76273 7.79306 8.42266 8.46173 9.14493 9.81658 10.48324 11.27995 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002653 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.276430 B =10552.889826 C =11043.874110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.132 4.132 4 C 0.139 3.861 5 H 0.111 0.889 6 N -0.713 5.713 7 C 0.512 3.488 8 O -0.538 6.538 9 C -0.107 4.107 10 C -0.060 4.060 11 C -0.106 4.106 12 C -0.121 4.121 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.105 4.105 16 C -0.165 4.165 17 H 0.100 0.900 18 C -0.091 4.091 19 C -0.121 4.121 20 C 0.156 3.844 21 N -0.569 5.569 22 C -0.233 4.233 23 H 0.067 0.933 24 C 0.000 4.000 25 N -0.894 5.894 26 Si 0.895 3.105 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.290 1.290 30 C 0.146 3.854 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.039 0.961 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.039 0.961 50 H -0.003 1.003 51 H 0.098 0.902 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 2.007 -18.489 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.065 4.065 3 C -0.190 4.190 4 C 0.034 3.966 5 H 0.129 0.871 6 N -0.363 5.363 7 C 0.298 3.702 8 O -0.415 6.415 9 C -0.147 4.147 10 C -0.060 4.060 11 C -0.125 4.125 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.123 4.123 16 C -0.187 4.187 17 H 0.118 0.882 18 C -0.128 4.128 19 C -0.160 4.160 20 C 0.031 3.969 21 N -0.290 5.290 22 C -0.362 4.362 23 H 0.085 0.915 24 C -0.198 4.198 25 N -0.539 5.539 26 Si 0.725 3.275 27 H -0.204 1.204 28 H -0.219 1.219 29 H -0.217 1.217 30 C 0.037 3.963 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.233 0.767 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.015 0.985 51 H 0.116 0.884 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.278 1.741 -18.303 18.876 hybrid contribution -1.020 0.329 0.717 1.289 sum 3.258 2.070 -17.586 18.004 Atomic orbital electron populations 1.21735 0.92173 1.00264 1.04452 1.21877 0.96765 0.93215 0.94686 1.21719 0.99732 0.95960 1.01550 1.22415 0.96815 0.97577 0.79754 0.87095 1.46081 1.13167 1.68989 1.08037 1.20436 0.87833 0.76935 0.85036 1.90708 1.15651 1.48718 1.86380 1.20730 0.98113 1.04243 0.91583 1.19300 0.97577 0.93618 0.95556 1.20978 0.96575 0.99071 0.95832 1.21081 0.98596 0.96098 0.98105 1.21115 0.99819 0.93255 1.00052 1.21095 0.96986 0.99410 0.96304 1.21004 0.98703 0.95267 0.97346 1.23297 1.01445 0.96081 0.97842 0.88221 1.21157 0.98136 0.96617 0.96930 1.21871 1.00804 0.98214 0.95083 1.21017 0.94445 0.84563 0.96902 1.43781 1.42253 1.21048 1.21933 1.18975 1.04499 0.89923 1.22835 0.91536 1.24957 0.97304 0.95967 1.01613 1.69966 1.35763 1.07917 1.40248 0.86340 0.79637 0.79420 0.82100 1.20362 1.21917 1.21723 1.21441 0.94764 0.93810 0.86309 0.93030 0.88681 0.94492 0.92498 0.93154 0.93394 0.92155 0.76672 0.88055 0.88128 0.86310 0.86233 0.86339 0.86185 0.86224 0.94268 0.93392 0.91662 0.94227 0.98522 0.88391 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 7.68 37.16 0.29 -1.89 16 2 C -0.06 -1.07 1.36 -161.48 -0.22 -1.29 16 3 C -0.13 -1.98 9.28 37.16 0.34 -1.64 16 4 C 0.14 2.26 3.52 -72.15 -0.25 2.00 16 5 H 0.11 1.96 7.39 -51.93 -0.38 1.58 16 6 N -0.71 -9.72 5.28 -57.98 -0.31 -10.03 16 7 C 0.51 7.21 7.82 -10.98 -0.09 7.12 16 8 O -0.54 -9.80 15.63 5.56 0.09 -9.71 16 9 C -0.11 -1.09 5.83 -29.03 -0.17 -1.26 16 10 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 11 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 12 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 13 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 14 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 15 C -0.11 -1.20 9.70 -39.59 -0.38 -1.58 16 16 C -0.17 -3.07 2.78 -98.49 -0.27 -3.35 16 17 H 0.10 2.07 5.89 -51.93 -0.31 1.76 16 18 C -0.09 -1.72 6.10 -27.07 -0.17 -1.89 16 19 C -0.12 -2.50 5.92 -26.20 -0.15 -2.66 16 20 C 0.16 3.60 5.79 -3.03 -0.02 3.59 16 21 N -0.57 -13.30 2.90 -169.14 -0.49 -13.79 16 22 C -0.23 -5.88 7.54 -15.06 -0.11 -5.99 16 23 H 0.07 1.68 7.37 -52.49 -0.39 1.29 16 24 C 0.00 0.00 5.06 -17.43 -0.09 -0.08 16 25 N -0.89 -24.27 11.17 55.49 0.62 -23.65 16 26 Si 0.89 20.80 29.59 -169.99 -5.03 15.77 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 C 0.15 2.89 3.08 -72.12 -0.22 2.67 16 31 H 0.05 1.05 8.00 -51.93 -0.42 0.63 16 32 H 0.09 1.92 5.47 -51.93 -0.28 1.63 16 33 H 0.04 0.51 8.04 -51.93 -0.42 0.09 16 34 H 0.06 0.98 5.65 -51.93 -0.29 0.69 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.60 7.38 -40.82 -0.30 4.30 16 39 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.90 8.06 -51.92 -0.42 0.48 16 48 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 51 H 0.10 2.55 5.66 -51.93 -0.29 2.25 16 52 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -29.79 402.08 -11.15 -40.95 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.54 Total: 8.23 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -3.55 Total: -13.82 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.18 Total: -47.47 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.79 -11.15 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087293171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.898 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds