Wall clock time and date at job start Wed Apr 1 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 113.19203 * 2 1 4 4 C 1.55783 * 114.08525 * 227.09672 * 2 1 3 5 5 H 1.08995 * 114.12472 * 169.50933 * 4 2 1 6 6 N 1.46498 * 114.12359 * 37.13414 * 4 2 1 7 7 C 1.34780 * 119.99648 * 155.00267 * 6 4 2 8 8 O 1.21281 * 120.00019 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99911 * 179.97438 * 7 6 4 10 10 C 1.50702 * 109.46987 * 180.02562 * 9 7 6 11 11 C 1.38235 * 119.99474 * 269.72182 * 10 9 7 12 12 C 1.38238 * 119.99534 * 179.76536 * 11 10 9 13 13 C 1.38236 * 120.00054 * 0.49226 * 12 11 10 14 14 C 1.38238 * 119.99700 * 359.78497 * 13 12 11 15 15 C 1.38229 * 120.00140 * 359.95943 * 14 13 12 16 16 C 1.49310 * 83.35745 * 283.98708 * 4 2 1 17 17 H 1.08998 * 112.95343 * 75.53872 * 16 4 2 18 18 C 1.51198 * 125.56211 * 217.71886 * 16 4 2 19 19 C 1.54085 * 106.20064 * 161.50063 * 18 16 4 20 20 C 1.52931 * 112.61319 * 304.41178 * 19 18 16 21 21 N 1.48407 * 111.63018 * 47.04874 * 20 19 18 22 22 C 1.36935 * 123.16896 * 128.12727 * 21 20 19 23 23 H 1.07999 * 119.99724 * 151.64194 * 22 21 20 24 24 C 1.38808 * 119.99795 * 331.36921 * 22 21 20 25 25 N 1.31618 * 120.00338 * 341.96710 * 24 22 21 26 26 Si 1.86802 * 119.99976 * 161.97073 * 24 22 21 27 27 H 1.48498 * 109.47145 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47355 * 119.99896 * 26 24 22 29 29 H 1.48497 * 109.47064 * 239.99869 * 26 24 22 30 30 C 1.45382 * 113.66384 * 307.85764 * 21 20 19 31 31 H 1.08996 * 112.09716 * 300.48774 * 30 21 20 32 32 H 1.08998 * 109.47232 * 281.07954 * 1 2 3 33 33 H 1.09003 * 109.47461 * 41.07828 * 1 2 3 34 34 H 1.09000 * 109.47021 * 161.07729 * 1 2 3 35 35 H 1.08994 * 109.47371 * 192.67473 * 3 2 1 36 36 H 1.09000 * 109.47200 * 312.67662 * 3 2 1 37 37 H 1.09003 * 109.46898 * 72.67607 * 3 2 1 38 38 H 0.96995 * 120.00335 * 334.99731 * 6 4 2 39 39 H 1.09003 * 109.46825 * 300.00162 * 9 7 6 40 40 H 1.08998 * 109.47229 * 59.99482 * 9 7 6 41 41 H 1.08001 * 120.00296 * 0.02562 * 11 10 9 42 42 H 1.07996 * 120.00105 * 180.25847 * 12 11 10 43 43 H 1.07993 * 120.00063 * 179.76512 * 13 12 11 44 44 H 1.08003 * 119.99429 * 179.97438 * 14 13 12 45 45 H 1.08004 * 119.99554 * 179.97438 * 15 14 13 46 46 H 1.09002 * 110.10145 * 280.67103 * 18 16 4 47 47 H 1.09009 * 110.10413 * 42.32676 * 18 16 4 48 48 H 1.09003 * 108.84232 * 65.38184 * 19 18 16 49 49 H 1.08999 * 108.84954 * 183.84622 * 19 18 16 50 50 H 1.08995 * 109.16653 * 286.47154 * 20 19 18 51 51 H 1.09005 * 109.07954 * 167.55979 * 20 19 18 52 52 H 0.96994 * 120.00267 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1325 1.4064 0.0000 4 6 2.1657 -0.9682 -1.0418 5 1 3.2405 -0.8406 -1.1706 6 7 1.4369 -1.0452 -2.3103 7 6 2.0823 -1.4053 -3.4374 8 8 3.2662 -1.6661 -3.4013 9 6 1.3326 -1.4851 -4.7422 10 6 2.2762 -1.9073 -5.8387 11 6 2.9637 -0.9526 -6.5645 12 6 3.8330 -1.3400 -7.5671 13 6 4.0070 -2.6817 -7.8507 14 6 3.3152 -3.6361 -7.1287 15 6 2.4499 -3.2489 -6.1226 16 6 1.7680 -2.0146 -0.0537 17 1 0.6986 -2.2251 -0.0648 18 6 2.5699 -3.2494 0.2902 19 6 2.0262 -3.7525 1.6413 20 6 2.0748 -2.6803 2.7307 21 7 1.5369 -1.3844 2.2472 22 6 0.5664 -0.6819 2.9102 23 1 0.5217 0.3935 2.8206 24 6 -0.3635 -1.3524 3.6928 25 7 -0.5497 -2.6453 3.5313 26 14 -1.3508 -0.4198 4.9754 27 1 -0.9562 1.0117 4.9591 28 1 -2.7987 -0.5381 4.6678 29 1 -1.0819 -0.9916 6.3192 30 6 2.1420 -0.9280 1.0066 31 1 3.2197 -0.7946 1.1008 32 1 -0.3633 0.1975 1.0085 33 1 -0.3634 0.7747 -0.6753 34 1 -0.3633 -0.9721 -0.3333 35 1 3.1971 1.3455 -0.2255 36 1 1.6353 2.0147 -0.7555 37 1 1.9943 1.8608 0.9811 38 1 0.4900 -0.8371 -2.3390 39 1 0.5278 -2.2152 -4.6547 40 1 0.9123 -0.5080 -4.9801 41 1 2.8248 0.0958 -6.3454 42 1 4.3732 -0.5943 -8.1314 43 1 4.6833 -2.9842 -8.6365 44 1 3.4509 -4.6844 -7.3506 45 1 1.9091 -3.9947 -5.5588 46 1 2.4314 -4.0116 -0.4766 47 1 3.6262 -2.9965 0.3821 48 1 0.9938 -4.0754 1.5071 49 1 2.6222 -4.6059 1.9649 50 1 3.1078 -2.5395 3.0484 51 1 1.4846 -3.0130 3.5846 52 1 -1.1991 -3.1139 4.0784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087293171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:05 Heat of formation + Delta-G solvation = 35.069981 kcal Electronic energy + Delta-G solvation = -30929.739520 eV Core-core repulsion = 27088.295451 eV Total energy + Delta-G solvation = -3841.444069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.42232 -40.64863 -39.36761 -36.91503 -34.67693 -34.45900 -33.64130 -32.08010 -31.72288 -30.77413 -28.72149 -28.46556 -27.43266 -25.93652 -23.92677 -23.43124 -22.90419 -21.93468 -21.23490 -20.75279 -19.77949 -18.51711 -17.89189 -17.66654 -17.09854 -16.54905 -16.37273 -15.91361 -15.81275 -15.49549 -15.34952 -15.16515 -14.92595 -14.64284 -14.34043 -14.21274 -14.11038 -13.98476 -13.86692 -13.32708 -13.26093 -13.09798 -12.95363 -12.89422 -12.76344 -12.64617 -12.61102 -12.28794 -12.06610 -12.03903 -11.96633 -11.82473 -11.65083 -11.50229 -11.27803 -11.10680 -10.76590 -10.60163 -10.23254 -9.76893 -9.74796 -9.57504 -8.45648 -7.76640 -5.17967 0.46784 0.56529 1.46856 1.51984 1.59072 1.73629 2.31342 2.57026 2.99031 3.29248 3.40903 3.49896 3.74276 3.79074 3.90314 3.99957 4.06639 4.18439 4.20978 4.30670 4.31813 4.41615 4.44613 4.52962 4.62927 4.67232 4.68563 4.69781 4.73675 4.80080 4.82472 4.92404 5.00846 5.07768 5.13207 5.15476 5.17802 5.19850 5.20714 5.29790 5.37230 5.42573 5.57993 5.60682 5.63161 5.66528 5.68041 5.72117 5.73509 5.80054 5.88564 6.17555 6.48771 6.70141 7.18034 7.37436 7.90592 8.56145 9.28815 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002653 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.276430 B =10552.889826 C =11043.874110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.128 4.128 4 C 0.159 3.841 5 H 0.103 0.897 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.098 4.098 10 C -0.079 4.079 11 C -0.121 4.121 12 C -0.130 4.130 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.126 4.126 16 C -0.155 4.155 17 H 0.080 0.920 18 C -0.086 4.086 19 C -0.109 4.109 20 C 0.155 3.845 21 N -0.582 5.582 22 C -0.224 4.224 23 H 0.066 0.934 24 C -0.048 4.048 25 N -0.921 5.921 26 Si 0.950 3.050 27 H -0.270 1.270 28 H -0.295 1.295 29 H -0.299 1.299 30 C 0.129 3.871 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.055 0.945 50 H 0.001 0.999 51 H 0.068 0.932 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 3.377 -20.792 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.185 4.185 4 C 0.053 3.947 5 H 0.121 0.879 6 N -0.355 5.355 7 C 0.301 3.699 8 O -0.460 6.460 9 C -0.137 4.137 10 C -0.079 4.079 11 C -0.139 4.139 12 C -0.148 4.148 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.144 4.144 16 C -0.177 4.177 17 H 0.098 0.902 18 C -0.124 4.124 19 C -0.148 4.148 20 C 0.030 3.970 21 N -0.303 5.303 22 C -0.354 4.354 23 H 0.084 0.916 24 C -0.244 4.244 25 N -0.568 5.568 26 Si 0.780 3.220 27 H -0.194 1.194 28 H -0.223 1.223 29 H -0.227 1.227 30 C 0.021 3.979 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.249 0.751 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.141 0.859 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.019 0.981 51 H 0.086 0.914 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.414 3.136 -20.627 21.326 hybrid contribution -0.983 -0.112 1.396 1.711 sum 3.431 3.024 -19.231 19.767 Atomic orbital electron populations 1.21616 0.92093 1.01018 1.03158 1.21824 0.96684 0.94061 0.93131 1.21678 1.00303 0.94739 1.01760 1.21947 0.96507 0.95664 0.80609 0.87926 1.45929 1.13682 1.68796 1.07092 1.21085 0.87413 0.75435 0.85991 1.90693 1.17743 1.50539 1.87065 1.20751 0.97771 1.06510 0.88707 1.19526 0.98315 0.93859 0.96202 1.21260 0.96785 0.99729 0.96149 1.21428 0.98456 0.96841 0.98053 1.21460 0.99862 0.93229 1.00391 1.21400 0.96821 1.00585 0.96168 1.21239 0.99432 0.95643 0.98058 1.23157 1.00140 0.95833 0.98550 0.90238 1.21099 0.98312 0.97041 0.95911 1.21701 0.99562 0.97980 0.95554 1.20935 0.93836 0.85397 0.96876 1.43915 1.42003 1.21042 1.23382 1.19123 1.04065 0.89979 1.22246 0.91637 1.25525 0.98728 0.96643 1.03474 1.70103 1.36585 1.09019 1.41047 0.85467 0.78179 0.78743 0.79635 1.19441 1.22279 1.22665 1.21675 0.94648 0.96187 0.85420 0.93284 0.92040 0.90961 0.93329 0.92533 0.90976 0.93242 0.75140 0.86076 0.85197 0.85122 0.84209 0.84157 0.84605 0.85921 0.93472 0.92823 0.94346 0.92590 0.98139 0.91419 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 7.68 71.98 0.55 -3.37 16 2 C -0.06 -1.77 1.36 -56.70 -0.08 -1.85 16 3 C -0.13 -3.52 9.28 71.98 0.67 -2.85 16 4 C 0.16 4.90 3.52 42.26 0.15 5.04 16 5 H 0.10 3.47 7.39 -2.39 -0.02 3.45 16 6 N -0.70 -17.54 5.28 -455.72 -2.41 -19.95 16 7 C 0.51 13.32 7.82 87.66 0.69 14.01 16 8 O -0.58 -20.39 15.63 -3.03 -0.05 -20.44 16 9 C -0.10 -1.73 5.83 29.10 0.17 -1.56 16 10 C -0.08 -1.67 4.37 -19.87 -0.09 -1.76 16 11 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 12 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 13 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 14 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 15 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 16 C -0.16 -5.70 2.78 -15.89 -0.04 -5.75 16 17 H 0.08 3.30 5.89 -2.39 -0.01 3.28 16 18 C -0.09 -3.23 6.10 30.37 0.19 -3.04 16 19 C -0.11 -4.58 5.92 30.94 0.18 -4.39 16 20 C 0.15 7.34 5.79 85.99 0.50 7.83 16 21 N -0.58 -27.59 2.90 -689.04 -2.00 -29.59 16 22 C -0.22 -11.44 7.54 84.03 0.63 -10.81 16 23 H 0.07 3.32 7.37 -2.91 -0.02 3.29 16 24 C -0.05 -2.55 5.06 84.86 0.43 -2.12 16 25 N -0.92 -51.55 11.17 21.65 0.24 -51.31 16 26 Si 0.95 43.51 29.59 68.60 2.03 45.54 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 30 C 0.13 5.06 3.08 42.88 0.13 5.20 16 31 H 0.05 1.97 8.00 -2.39 -0.02 1.96 16 32 H 0.06 2.44 5.47 -2.39 -0.01 2.43 16 33 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 34 H 0.05 1.63 5.65 -2.39 -0.01 1.61 16 35 H 0.06 1.48 8.05 -2.39 -0.02 1.47 16 36 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 8.27 7.38 -92.71 -0.68 7.59 16 39 H 0.12 1.66 8.09 -2.39 -0.02 1.65 16 40 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 41 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.96 8.06 -2.38 -0.02 1.94 16 48 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.07 3.66 5.66 -2.38 -0.01 3.64 16 52 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -65.94 402.08 3.22 -62.71 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.22 Total: 29.73 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 5.18 Total: -16.69 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.16 Total: -100.85 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.94 3.22 -62.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087293171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.783 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds