Wall clock time and date at job start Wed Apr 1 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99892 * 2 1 4 4 C 1.38233 * 119.99922 * 180.26737 * 3 2 1 5 5 C 1.38237 * 120.00266 * 359.75039 * 4 3 2 6 6 C 1.38231 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99998 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00063 * 179.76247 * 2 1 3 9 9 C 1.50696 * 120.00254 * 0.02562 * 8 2 1 10 10 C 1.50694 * 109.47112 * 269.72416 * 9 8 2 11 11 O 1.21275 * 120.00290 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00041 * 180.27128 * 10 9 8 13 13 C 1.47378 * 125.74146 * 179.72477 * 12 10 9 14 14 C 1.55417 * 106.73735 * 179.06426 * 13 12 10 15 15 H 1.08999 * 112.76171 * 146.41694 * 14 13 12 16 16 C 1.52902 * 106.56754 * 270.28674 * 14 13 12 17 17 C 1.51882 * 111.49542 * 169.08878 * 16 14 13 18 18 N 1.44346 * 113.48111 * 321.32695 * 17 16 14 19 19 C 1.36934 * 116.42419 * 187.48035 * 18 17 16 20 20 H 1.08004 * 119.99861 * 153.65784 * 19 18 17 21 21 C 1.38809 * 120.00364 * 333.65364 * 19 18 17 22 22 N 1.31617 * 120.00114 * 335.45413 * 21 19 18 23 23 Si 1.86807 * 120.00079 * 155.44581 * 21 19 18 24 24 H 1.48499 * 109.46750 * 94.85195 * 23 21 19 25 25 H 1.48499 * 109.46968 * 214.85138 * 23 21 19 26 26 H 1.48491 * 109.47133 * 334.85124 * 23 21 19 27 27 C 1.43976 * 127.14752 * 7.50314 * 18 17 16 28 28 C 1.49787 * 116.30079 * 2.84953 * 27 18 17 29 29 H 1.08994 * 109.25402 * 141.40920 * 28 27 18 30 30 C 1.47931 * 125.73838 * 359.42409 * 12 10 9 31 31 H 1.09000 * 109.46901 * 270.22926 * 1 2 3 32 32 H 1.09001 * 109.47336 * 30.23459 * 1 2 3 33 33 H 1.08999 * 109.46464 * 150.23654 * 1 2 3 34 34 H 1.08003 * 119.99993 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.99772 * 179.72541 * 4 3 2 36 36 H 1.07997 * 120.00208 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47325 * 270.02431 * 7 6 5 38 38 H 1.09002 * 109.46826 * 30.02338 * 7 6 5 39 39 H 1.09000 * 109.47422 * 150.01843 * 7 6 5 40 40 H 1.09008 * 109.47297 * 149.72488 * 9 8 2 41 41 H 1.09003 * 109.46919 * 29.72607 * 9 8 2 42 42 H 1.09000 * 110.00796 * 298.37971 * 13 12 10 43 43 H 1.09002 * 110.00532 * 59.74599 * 13 12 10 44 44 H 1.08999 * 109.04467 * 290.43985 * 16 14 13 45 45 H 1.09000 * 109.04175 * 49.31738 * 16 14 13 46 46 H 1.09009 * 108.95701 * 199.97899 * 17 16 14 47 47 H 1.09005 * 108.02252 * 82.01119 * 17 16 14 48 48 H 0.96993 * 120.00543 * 180.02562 * 22 21 19 49 49 H 1.09004 * 108.11506 * 241.07747 * 27 18 17 50 50 H 1.08995 * 108.11461 * 124.62846 * 27 18 17 51 51 H 1.09003 * 110.56566 * 274.13593 * 30 12 10 52 52 H 1.09000 * 110.57067 * 36.99876 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0056 5 6 4.2718 0.0001 -0.0060 6 6 3.5806 -1.1970 -0.0002 7 6 4.3341 -2.5021 -0.0012 8 6 2.1982 -1.1971 0.0050 9 6 1.4448 -2.5022 0.0098 10 6 1.1990 -2.9351 1.4321 11 8 1.5961 -2.2510 2.3514 12 7 0.5423 -4.0851 1.6827 13 6 0.2390 -4.6299 3.0180 14 6 -0.5472 -5.9517 2.7941 15 1 -0.3348 -6.7028 3.5549 16 6 -2.0281 -5.5747 2.7425 17 6 -2.8818 -6.7364 2.2644 18 7 -2.2659 -7.5073 1.2108 19 6 -3.0443 -8.4698 0.6252 20 1 -2.8470 -8.7796 -0.3904 21 6 -4.0868 -9.0473 1.3369 22 7 -4.0558 -9.0636 2.6526 23 14 -5.5338 -9.8011 0.4273 24 1 -5.3073 -11.2590 0.2587 25 1 -6.7780 -9.5804 1.2073 26 1 -5.6664 -9.1632 -0.9070 27 6 -0.9231 -7.3758 0.7084 28 6 -0.0532 -6.3683 1.3952 29 1 0.9595 -6.7633 1.4758 30 6 -0.0010 -5.0095 0.6635 31 1 -0.3633 0.0041 1.0277 32 1 -0.3634 0.8879 -0.5175 33 1 -0.3632 -0.8921 -0.5102 34 1 1.6582 2.1325 -0.0004 35 1 4.1204 2.1325 -0.0101 36 1 5.3517 0.0001 -0.0107 37 1 4.5112 -2.8187 -1.0291 38 1 5.2888 -2.3708 0.5082 39 1 3.7474 -3.2609 0.5167 40 1 2.0320 -3.2627 -0.5051 41 1 0.4904 -2.3727 -0.5007 42 1 1.1645 -4.8333 3.5568 43 1 -0.3721 -3.9230 3.5793 44 1 -2.3511 -5.2647 3.7363 45 1 -2.1592 -4.7420 2.0515 46 1 -3.8358 -6.3504 1.9049 47 1 -3.0674 -7.3913 3.1157 48 1 -4.7840 -9.4675 3.1500 49 1 -0.9807 -7.1102 -0.3473 50 1 -0.4373 -8.3488 0.7811 51 1 -0.9996 -4.6980 0.3574 52 1 0.6650 -5.0643 -0.1977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087982240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:30 Heat of formation + Delta-G solvation = 9.774627 kcal Electronic energy + Delta-G solvation = -30591.461445 eV Core-core repulsion = 26748.920487 eV Total energy + Delta-G solvation = -3842.540958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.64073 -39.71390 -38.13389 -35.62804 -33.73483 -33.52218 -32.59047 -31.57688 -30.34520 -29.17369 -27.87459 -26.79445 -26.63090 -25.43097 -23.53550 -22.23759 -21.71241 -20.99859 -20.83764 -19.09155 -17.86167 -17.23607 -16.85631 -16.47694 -16.28254 -15.60028 -15.22525 -14.90776 -14.58936 -14.37024 -14.09607 -13.83808 -13.70366 -13.36557 -13.28075 -13.13081 -13.08229 -13.03467 -12.86382 -12.83190 -12.55595 -12.28797 -12.18239 -11.80713 -11.75233 -11.62917 -11.28576 -11.12074 -11.03619 -10.97914 -10.77064 -10.52703 -10.29459 -10.24795 -9.93676 -9.73236 -9.66056 -9.58842 -8.69179 -8.64282 -8.52674 -8.49845 -6.64921 -5.64975 -3.28955 1.22262 1.27578 2.69068 3.03705 3.35614 3.43850 3.47089 3.63905 4.46063 4.47378 4.57774 4.62249 4.73365 4.76318 4.82206 4.92736 5.02021 5.10106 5.14533 5.20584 5.29385 5.30825 5.37818 5.43272 5.48984 5.50720 5.51718 5.56398 5.57862 5.66773 5.68539 5.74892 5.84399 5.90023 6.01289 6.04549 6.08940 6.13262 6.20252 6.36667 6.37281 6.42091 6.51080 6.55168 6.55758 6.63864 6.76792 6.83160 6.91596 7.28495 7.59920 7.79392 7.90611 8.23309 8.50238 9.26457 9.96468 10.25542 11.21274 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.002373 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.068681 B =11798.495568 C =11972.307916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.117 4.117 8 C -0.064 4.064 9 C -0.105 4.105 10 C 0.530 3.470 11 O -0.538 6.538 12 N -0.618 5.618 13 C 0.110 3.890 14 C -0.081 4.081 15 H 0.098 0.902 16 C -0.122 4.122 17 C 0.156 3.844 18 N -0.585 5.585 19 C -0.269 4.269 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.889 5.889 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.097 4.097 29 H 0.074 0.926 30 C 0.105 3.895 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.019 0.981 47 H 0.079 0.921 48 H 0.253 0.747 49 H 0.014 0.986 50 H 0.024 0.976 51 H 0.077 0.923 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.716 16.163 -5.418 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.174 4.174 8 C -0.064 4.064 9 C -0.144 4.144 10 C 0.319 3.681 11 O -0.415 6.415 12 N -0.353 5.353 13 C -0.012 4.012 14 C -0.100 4.100 15 H 0.116 0.884 16 C -0.160 4.160 17 C 0.031 3.969 18 N -0.310 5.310 19 C -0.398 4.398 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.050 3.950 28 C -0.116 4.116 29 H 0.092 0.908 30 C -0.018 4.018 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.041 0.959 51 H 0.095 0.905 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.904 16.604 -4.791 22.181 hybrid contribution -0.832 -0.395 -0.388 1.000 sum 13.072 16.210 -5.179 21.458 Atomic orbital electron populations 1.20882 0.91360 1.02651 1.02704 1.19695 0.95907 0.92556 0.98518 1.20931 0.94256 0.97214 1.02116 1.21059 0.94278 0.97809 1.00126 1.20925 0.99511 0.91941 1.02192 1.19686 0.92929 0.95470 0.98659 1.20832 0.99981 0.94458 1.02088 1.18972 0.92747 0.93169 1.01529 1.20732 1.02364 0.96204 0.95107 1.20071 0.77553 0.79485 0.91036 1.90708 1.51002 1.53176 1.46589 1.48764 1.55943 1.21831 1.08716 1.22403 0.99260 0.95417 0.84165 1.22055 0.95785 0.94826 0.97312 0.88424 1.21720 0.94030 0.99772 1.00465 1.20265 0.91917 0.90750 0.93919 1.42664 1.07677 1.38771 1.41848 1.19108 1.09887 1.15468 0.95368 0.91643 1.24952 1.00830 0.98608 0.95010 1.69999 1.31948 1.46164 1.05167 0.86364 0.82683 0.78899 0.79369 1.21492 1.21548 1.20446 1.19243 0.85801 0.94896 0.95101 1.21633 1.00277 0.94338 0.95401 0.90755 1.22594 0.99066 0.89067 0.91044 0.90878 0.91488 0.91354 0.86247 0.86274 0.86267 0.91036 0.91434 0.91601 0.88015 0.87783 0.91996 0.91481 0.92256 0.93539 0.96289 0.90327 0.93697 0.96818 0.95853 0.90517 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.60 36.01 0.35 -0.85 16 2 C -0.07 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 4 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.33 9.70 -39.58 -0.38 -1.72 16 6 C -0.07 -0.77 5.88 -104.62 -0.62 -1.39 16 7 C -0.12 -1.12 9.19 36.01 0.33 -0.78 16 8 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 9 C -0.10 -1.18 3.76 -29.04 -0.11 -1.28 16 10 C 0.53 7.62 7.44 -10.99 -0.08 7.54 16 11 O -0.54 -9.64 16.37 5.56 0.09 -9.55 16 12 N -0.62 -8.65 3.34 -169.44 -0.57 -9.21 16 13 C 0.11 1.60 6.25 -2.28 -0.01 1.59 16 14 C -0.08 -1.28 3.60 -88.81 -0.32 -1.60 16 15 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 16 C -0.12 -2.16 4.83 -27.35 -0.13 -2.29 16 17 C 0.16 3.57 5.07 -5.76 -0.03 3.54 16 18 N -0.59 -13.86 3.23 -179.51 -0.58 -14.44 16 19 C -0.27 -7.12 9.27 -15.06 -0.14 -7.26 16 20 H 0.07 1.71 7.94 -52.48 -0.42 1.30 16 21 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 22 N -0.89 -24.96 10.87 55.49 0.60 -24.35 16 23 Si 0.90 21.17 29.62 -169.99 -5.04 16.13 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.18 3.40 5.75 -6.97 -0.04 3.36 16 28 C -0.10 -1.49 2.85 -90.90 -0.26 -1.75 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 C 0.10 1.39 5.48 -2.52 -0.01 1.37 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.64 5.94 -51.93 -0.31 0.33 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.07 0.69 6.37 -51.93 -0.33 0.36 16 40 H 0.10 0.96 6.42 -51.92 -0.33 0.63 16 41 H 0.10 1.03 5.94 -51.93 -0.31 0.72 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.01 7.78 -51.93 -0.40 0.60 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 46 H 0.02 0.47 8.09 -51.92 -0.42 0.05 16 47 H 0.08 2.06 5.80 -51.93 -0.30 1.76 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.01 0.26 7.81 -51.93 -0.41 -0.14 16 50 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 51 H 0.08 1.09 7.22 -51.93 -0.37 0.72 16 52 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -31.30 397.52 -11.44 -42.74 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.54 Total: 0.06 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.40 Total: -7.37 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.54 Total: -48.00 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.04 Total: 16.13 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.30 -11.44 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087982240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.510 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds