Wall clock time and date at job start Wed Apr 1 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.47441 * 2 1 4 4 C 1.38255 * 119.99758 * 265.20927 * 3 2 1 5 5 C 1.38209 * 119.99529 * 180.22880 * 4 3 2 6 6 C 1.38267 * 120.00323 * 359.81407 * 5 4 3 7 7 C 1.38207 * 119.99411 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99771 * 84.99453 * 3 2 1 9 9 C 1.50705 * 120.00205 * 0.02562 * 8 3 2 10 10 C 1.50693 * 109.46864 * 84.72294 * 9 8 3 11 11 O 1.21280 * 120.00650 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99757 * 180.02562 * 10 9 8 13 13 C 1.47755 * 125.82233 * 179.71465 * 12 10 9 14 14 C 1.56199 * 104.00675 * 154.06042 * 13 12 10 15 15 H 1.09003 * 113.91281 * 161.26210 * 14 13 12 16 16 C 1.52881 * 106.67308 * 286.46081 * 14 13 12 17 17 C 1.51605 * 111.55625 * 168.35355 * 16 14 13 18 18 N 1.44327 * 113.10990 * 320.91544 * 17 16 14 19 19 C 1.36939 * 116.35569 * 187.25993 * 18 17 16 20 20 H 1.07998 * 120.00440 * 152.59723 * 19 18 17 21 21 C 1.38820 * 119.99495 * 332.59873 * 19 18 17 22 22 N 1.31618 * 120.00301 * 335.12585 * 21 19 18 23 23 Si 1.86796 * 119.99774 * 155.12090 * 21 19 18 24 24 H 1.48500 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47068 * 120.00054 * 23 21 19 26 26 H 1.48494 * 109.47486 * 240.00125 * 23 21 19 27 27 C 1.43999 * 127.29180 * 7.28187 * 18 17 16 28 28 C 1.49943 * 116.09619 * 2.47841 * 27 18 17 29 29 H 1.09006 * 108.82500 * 141.04736 * 28 27 18 30 30 C 1.47615 * 125.81413 * 0.02562 * 12 10 9 31 31 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46985 * 300.00130 * 1 2 3 33 33 H 1.09003 * 109.46557 * 59.99834 * 1 2 3 34 34 H 1.09002 * 109.47373 * 239.99529 * 2 1 3 35 35 H 1.09010 * 109.47140 * 119.99878 * 2 1 3 36 36 H 1.07994 * 120.00189 * 0.07010 * 4 3 2 37 37 H 1.08005 * 120.00258 * 179.83327 * 5 4 3 38 38 H 1.07999 * 120.00073 * 180.02562 * 6 5 4 39 39 H 1.08006 * 119.99461 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.46946 * 204.72233 * 9 8 3 41 41 H 1.08994 * 109.46782 * 324.72135 * 9 8 3 42 42 H 1.09004 * 110.50235 * 272.80370 * 13 12 10 43 43 H 1.09004 * 110.50199 * 35.48214 * 13 12 10 44 44 H 1.09003 * 109.06208 * 47.81627 * 16 14 13 45 45 H 1.09000 * 109.05841 * 288.88566 * 16 14 13 46 46 H 1.08999 * 108.75375 * 199.98278 * 17 16 14 47 47 H 1.08992 * 108.65789 * 81.78378 * 17 16 14 48 48 H 0.96996 * 120.00012 * 180.02562 * 22 21 19 49 49 H 1.09008 * 108.15411 * 240.75970 * 27 18 17 50 50 H 1.08999 * 108.15640 * 124.20387 * 27 18 17 51 51 H 1.08992 * 110.08451 * 299.82051 * 30 12 10 52 52 H 1.08997 * 110.08457 * 61.38775 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3572 2.0392 -1.1932 5 6 2.8224 3.3406 -1.1927 6 6 2.9595 4.0255 0.0006 7 6 2.6307 3.4087 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8063 1.4345 2.4927 10 6 2.9836 0.6324 2.9840 11 8 4.0120 0.6087 2.3415 12 7 2.8934 -0.0597 4.1371 13 6 3.9606 -0.8897 4.7333 14 6 3.6341 -0.8852 6.2608 15 1 4.1118 -1.6918 6.8170 16 6 4.0088 0.5010 6.7853 17 6 3.4795 0.7277 8.1878 18 7 2.1594 0.1804 8.3904 19 6 1.5537 0.4791 9.5816 20 1 0.4762 0.5082 9.6473 21 6 2.3250 0.7445 10.7050 22 7 3.5447 0.2584 10.7957 23 14 1.6317 1.7918 12.0877 24 1 0.2496 2.2129 11.7445 25 1 1.6100 1.0010 13.3445 26 1 2.4839 2.9935 12.2736 27 6 1.4080 -0.6448 7.4805 28 6 2.0992 -1.0164 6.2028 29 1 1.8536 -2.0497 5.9577 30 6 1.7093 -0.1228 5.0163 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8901 36 1 2.2497 1.5044 -2.1252 37 1 3.0787 3.8229 -2.1245 38 1 3.3226 5.0426 0.0009 39 1 2.7381 3.9435 2.1251 40 1 1.5472 2.1907 3.2336 41 1 0.9550 0.7721 2.3366 42 1 3.9226 -1.9039 4.3355 43 1 4.9382 -0.4434 4.5508 44 1 3.5918 1.2578 6.1207 45 1 5.0945 0.5965 6.7948 46 1 3.4478 1.7999 8.3813 47 1 4.1639 0.2639 8.8980 48 1 4.0834 0.4436 11.5808 49 1 0.4866 -0.1200 7.2279 50 1 1.1374 -1.5640 8.0001 51 1 1.4514 0.8758 5.3689 52 1 0.8674 -0.5598 4.4795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088009794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:31 Heat of formation + Delta-G solvation = 8.626213 kcal Electronic energy + Delta-G solvation = -30648.069285 eV Core-core repulsion = 26805.478528 eV Total energy + Delta-G solvation = -3842.590757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.60094 -39.65498 -38.09051 -35.60750 -34.46926 -32.89424 -32.38129 -31.52197 -30.36257 -29.65643 -28.39612 -27.21027 -25.47196 -24.05762 -23.56977 -22.28870 -21.94603 -21.46348 -20.67847 -19.13077 -17.90763 -17.15595 -16.85981 -16.52363 -16.34454 -15.61891 -15.36915 -15.00040 -14.82137 -14.27950 -13.98908 -13.92211 -13.82565 -13.67869 -13.25245 -13.24626 -13.08287 -13.01632 -12.71953 -12.47658 -12.35866 -12.19666 -11.95791 -11.93671 -11.75470 -11.44294 -11.27596 -11.14544 -10.96106 -10.82973 -10.78182 -10.56610 -10.28033 -10.22068 -9.90907 -9.73827 -9.61791 -9.57130 -8.88297 -8.67724 -8.55866 -8.44897 -6.63461 -5.64677 -3.29705 1.23506 1.31790 2.71055 3.05666 3.35850 3.44765 3.47154 3.69100 4.46617 4.49583 4.59594 4.60191 4.75390 4.76980 4.81840 4.98185 4.99911 5.07709 5.12643 5.17933 5.28677 5.31070 5.36283 5.38542 5.42725 5.49828 5.54892 5.57051 5.69820 5.71782 5.74135 5.83442 5.88255 5.93819 5.98060 5.99208 6.06394 6.16341 6.27939 6.31744 6.38095 6.41339 6.54067 6.55758 6.59311 6.67031 6.77269 6.84125 6.91725 7.29301 7.61946 7.79929 7.91595 8.24800 8.51292 9.26899 9.96848 10.26247 11.21215 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.002531 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.703282 B =11058.527603 C =11381.313156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.103 4.103 10 C 0.531 3.469 11 O -0.538 6.538 12 N -0.616 5.616 13 C 0.107 3.893 14 C -0.082 4.082 15 H 0.101 0.899 16 C -0.120 4.120 17 C 0.156 3.844 18 N -0.585 5.585 19 C -0.269 4.269 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.888 5.888 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.176 3.824 28 C -0.099 4.099 29 H 0.073 0.927 30 C 0.108 3.892 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.016 0.984 47 H 0.081 0.919 48 H 0.252 0.748 49 H 0.014 0.986 50 H 0.024 0.976 51 H 0.074 0.926 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 0.784 -21.532 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.143 4.143 10 C 0.319 3.681 11 O -0.416 6.416 12 N -0.350 5.350 13 C -0.015 4.015 14 C -0.101 4.101 15 H 0.119 0.881 16 C -0.158 4.158 17 C 0.031 3.969 18 N -0.310 5.310 19 C -0.399 4.399 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.531 5.531 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.050 3.950 28 C -0.118 4.118 29 H 0.091 0.909 30 C -0.015 4.015 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.034 0.966 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.042 0.958 51 H 0.092 0.908 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.378 0.814 -21.907 22.181 hybrid contribution -0.274 0.638 0.862 1.107 sum -3.653 1.451 -21.045 21.408 Atomic orbital electron populations 1.21778 0.94646 1.01831 1.02211 1.20562 0.95985 0.92916 1.03048 1.19657 0.98453 0.95669 0.92619 1.20948 1.00366 0.95229 0.97236 1.21088 0.99882 0.94852 0.97962 1.21064 1.00744 0.99955 0.92523 1.21009 0.98363 0.94514 0.98281 1.19143 0.99777 0.94012 0.93104 1.20724 0.97597 1.00098 0.95864 1.20066 0.89301 0.79184 0.79503 1.90712 1.31340 1.63621 1.55888 1.48733 1.16009 1.48260 1.22037 1.22680 0.91459 0.94179 0.93185 1.22282 0.95168 0.99670 0.93029 0.88099 1.21579 1.00019 0.94932 0.99250 1.20241 0.87822 0.96350 0.92475 1.42689 1.16281 1.56180 1.15832 1.19150 0.91382 1.42694 0.86653 0.91667 1.24970 0.96706 1.00594 0.97105 1.70001 1.10620 1.44053 1.28457 0.86315 0.78628 0.80461 0.81923 1.20207 1.21806 1.21546 1.19335 0.93239 0.94159 0.88297 1.21498 0.96323 0.98901 0.95064 0.90882 1.22211 0.87398 1.01155 0.90690 0.92269 0.92429 0.92473 0.91055 0.91087 0.86306 0.86310 0.86189 0.86150 0.88023 0.87911 0.91868 0.90521 0.93435 0.92597 0.96555 0.90201 0.93725 0.96860 0.95832 0.90776 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 37.16 0.36 -0.81 16 2 C -0.09 -0.87 5.38 -27.88 -0.15 -1.02 16 3 C -0.06 -0.73 5.13 -104.62 -0.54 -1.27 16 4 C -0.12 -1.25 9.68 -39.59 -0.38 -1.64 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 7 C -0.10 -1.23 9.68 -39.59 -0.38 -1.61 16 8 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 9 C -0.10 -1.19 4.37 -29.04 -0.13 -1.32 16 10 C 0.53 7.78 7.03 -10.98 -0.08 7.71 16 11 O -0.54 -9.75 16.29 5.56 0.09 -9.66 16 12 N -0.62 -8.71 2.80 -169.41 -0.47 -9.19 16 13 C 0.11 1.54 6.25 -1.64 -0.01 1.53 16 14 C -0.08 -1.31 3.77 -88.36 -0.33 -1.65 16 15 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 16 C -0.12 -2.20 4.98 -27.50 -0.14 -2.34 16 17 C 0.16 3.62 5.13 -5.91 -0.03 3.59 16 18 N -0.59 -14.00 3.23 -179.58 -0.58 -14.58 16 19 C -0.27 -7.19 9.26 -15.06 -0.14 -7.33 16 20 H 0.07 1.72 7.94 -52.49 -0.42 1.31 16 21 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 22 N -0.89 -25.10 10.92 55.49 0.61 -24.49 16 23 Si 0.90 21.31 29.62 -169.99 -5.04 16.28 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.18 3.43 5.67 -6.89 -0.04 3.39 16 28 C -0.10 -1.51 2.68 -91.23 -0.24 -1.75 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 C 0.11 1.43 5.19 -3.13 -0.02 1.42 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.46 6.80 -51.93 -0.35 0.10 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.07 0.80 6.40 -51.92 -0.33 0.47 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 41 H 0.10 1.00 5.63 -51.93 -0.29 0.71 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.05 0.87 6.77 -51.93 -0.35 0.52 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 47 H 0.08 2.12 5.75 -51.93 -0.30 1.82 16 48 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.01 0.26 7.78 -51.92 -0.40 -0.15 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 1.05 7.83 -51.93 -0.41 0.64 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -31.34 400.27 -11.68 -43.03 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.73 Total: 0.11 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.59 Total: -7.53 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.45 Total: -48.25 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.04 Total: 16.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.34 -11.68 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088009794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.651 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds