Wall clock time and date at job start Wed Apr 1 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 C 1.38251 * 120.00203 * 90.00098 * 3 2 1 5 5 C 1.38212 * 120.00296 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99505 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00479 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00017 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47188 * 90.00314 * 8 7 6 10 10 O 1.21279 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99820 * 179.97438 * 9 8 7 12 12 C 1.47384 * 125.74003 * 179.97438 * 11 9 8 13 13 C 1.55412 * 106.73670 * 179.06329 * 12 11 9 14 14 H 1.09004 * 112.75845 * 146.41700 * 13 12 11 15 15 C 1.52906 * 106.56587 * 270.28466 * 13 12 11 16 16 C 1.51879 * 111.49612 * 169.08957 * 15 13 12 17 17 N 1.44345 * 113.48057 * 321.32569 * 16 15 13 18 18 C 1.36936 * 116.42540 * 187.47546 * 17 16 15 19 19 H 1.08003 * 119.99760 * 152.70646 * 18 17 16 20 20 C 1.38814 * 120.00230 * 332.71308 * 18 17 16 21 21 N 1.31624 * 119.99582 * 335.93635 * 20 18 17 22 22 Si 1.86800 * 120.00251 * 155.94077 * 20 18 17 23 23 H 1.48502 * 109.46935 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.46997 * 119.99611 * 22 20 18 25 25 H 1.48501 * 109.46923 * 239.99938 * 22 20 18 26 26 C 1.43978 * 127.14726 * 7.50674 * 17 16 15 27 27 C 1.49788 * 116.30066 * 2.84405 * 26 17 16 28 28 H 1.08999 * 109.24563 * 141.41408 * 27 26 17 29 29 C 1.47937 * 125.74076 * 359.69287 * 11 9 8 30 30 C 1.38215 * 119.99705 * 270.02014 * 3 2 1 31 31 H 1.09001 * 109.47262 * 300.00422 * 1 2 3 32 32 H 1.08998 * 109.46756 * 60.00257 * 1 2 3 33 33 H 1.08997 * 109.47015 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47262 * 239.99578 * 2 1 3 35 35 H 1.08998 * 109.46756 * 119.99743 * 2 1 3 36 36 H 1.07999 * 120.00488 * 359.97438 * 4 3 2 37 37 H 1.08001 * 120.00529 * 179.97438 * 5 4 3 38 38 H 1.08011 * 119.99772 * 179.70592 * 6 5 4 39 39 H 1.09009 * 109.46364 * 210.00067 * 8 7 6 40 40 H 1.08992 * 109.47438 * 329.99771 * 8 7 6 41 41 H 1.09000 * 110.00227 * 298.38348 * 12 11 9 42 42 H 1.08994 * 110.00501 * 59.74238 * 12 11 9 43 43 H 1.09005 * 109.04359 * 290.44344 * 15 13 12 44 44 H 1.08997 * 109.04374 * 49.32022 * 15 13 12 45 45 H 1.09000 * 108.95748 * 199.97922 * 16 15 13 46 46 H 1.08998 * 108.01896 * 82.01285 * 16 15 13 47 47 H 0.97003 * 119.99434 * 180.02562 * 21 20 18 48 48 H 1.09000 * 108.11209 * 241.07009 * 26 17 16 49 49 H 1.08997 * 108.11459 * 124.62491 * 26 17 16 50 50 H 1.09003 * 110.56084 * 274.14392 * 29 11 9 51 51 H 1.08998 * 110.56451 * 37.00261 * 29 11 9 52 52 H 1.07996 * 119.99911 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7229 3.3759 1.1973 6 6 2.9533 4.0276 -0.0001 7 6 2.7239 3.3757 -1.1971 8 6 2.9756 4.0859 -2.5022 9 6 4.3992 3.8495 -2.9363 10 8 5.1370 3.1715 -2.2530 11 7 4.8526 4.3916 -4.0840 12 6 6.2149 4.2439 -4.6267 13 6 6.2484 5.0239 -5.9705 14 1 7.2179 5.4810 -6.1687 15 6 5.8353 4.0336 -7.0598 16 6 5.5716 4.7365 -8.3801 17 7 4.9074 6.0094 -8.2313 18 6 4.4982 6.6218 -9.3857 19 1 3.6550 7.2965 -9.3694 20 6 5.1670 6.3754 -10.5769 21 7 6.4191 5.9699 -10.5568 22 14 4.2901 6.6193 -12.2082 23 1 2.8992 7.0759 -11.9590 24 1 5.0108 7.6407 -13.0096 25 1 4.2631 5.3346 -12.9525 26 6 4.6283 6.7061 -7.0026 27 6 5.1358 6.0664 -5.7469 28 1 5.5002 6.8402 -5.0714 29 6 4.0647 5.2302 -5.0139 30 6 2.2623 2.0725 -1.1970 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0824 1.5637 2.1326 37 1 2.9026 3.8852 2.1326 38 1 3.3084 5.0476 -0.0001 39 1 2.2953 3.7012 -3.2621 40 1 2.8081 5.1550 -2.3723 41 1 6.9408 4.6665 -3.9320 42 1 6.4345 3.1907 -4.8012 43 1 6.6265 3.2947 -7.1873 44 1 4.9222 3.5251 -6.7505 45 1 4.9572 4.0914 -9.0081 46 1 6.5299 4.8965 -8.8742 47 1 6.8865 5.7981 -11.3892 48 1 3.5476 6.8168 -6.9138 49 1 5.0607 7.7041 -7.0732 50 1 3.5138 4.6069 -5.7182 51 1 3.3847 5.8790 -4.4618 52 1 2.0823 1.5633 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088017259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:37 Heat of formation + Delta-G solvation = 4.688386 kcal Electronic energy + Delta-G solvation = -29788.949140 eV Core-core repulsion = 25946.187626 eV Total energy + Delta-G solvation = -3842.761514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.48585 -39.60408 -38.21879 -35.64048 -34.62445 -32.87080 -32.36664 -31.54704 -30.31573 -29.70720 -28.44295 -27.21253 -25.46359 -24.15824 -23.57629 -22.33770 -22.11082 -21.50789 -20.62102 -19.06598 -17.85227 -17.21915 -16.82979 -16.63940 -16.12912 -15.64228 -15.39683 -15.08414 -14.73051 -14.46719 -14.07284 -13.93980 -13.85669 -13.70803 -13.38226 -13.22565 -13.14908 -13.04092 -12.84354 -12.48301 -12.36157 -12.20413 -11.95824 -11.92294 -11.78143 -11.48092 -11.28193 -11.11778 -11.04636 -10.95385 -10.79645 -10.51728 -10.27886 -10.23585 -9.94485 -9.73097 -9.66185 -9.58627 -8.90283 -8.73203 -8.52945 -8.50655 -6.64089 -5.64722 -3.30206 1.20147 1.28419 2.68616 3.03027 3.35484 3.44320 3.46735 3.65765 4.45261 4.46341 4.50934 4.57903 4.67862 4.73825 4.89476 4.95461 4.99815 5.06048 5.08903 5.14635 5.24599 5.29859 5.31312 5.38077 5.38572 5.44640 5.51299 5.56469 5.63288 5.63811 5.68086 5.84649 5.86260 5.90166 5.94114 5.97986 6.04927 6.13638 6.19937 6.32772 6.37678 6.43642 6.48859 6.51361 6.55972 6.64072 6.77169 6.83733 6.88317 7.28282 7.59684 7.79421 7.90958 8.22189 8.50786 9.26530 9.96236 10.25752 11.21159 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002126 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.116674 B =13166.343878 C =13623.911869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.100 4.100 9 C 0.528 3.472 10 O -0.540 6.540 11 N -0.618 5.618 12 C 0.110 3.890 13 C -0.081 4.081 14 H 0.098 0.902 15 C -0.122 4.122 16 C 0.156 3.844 17 N -0.585 5.585 18 C -0.268 4.268 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.176 3.824 27 C -0.097 4.097 28 H 0.074 0.926 29 C 0.105 3.895 30 C -0.102 4.102 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.079 0.921 47 H 0.252 0.748 48 H 0.014 0.986 49 H 0.024 0.976 50 H 0.077 0.923 51 H 0.074 0.926 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -6.699 20.815 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.139 4.139 9 C 0.317 3.683 10 O -0.417 6.417 11 N -0.352 5.352 12 C -0.013 4.013 13 C -0.100 4.100 14 H 0.116 0.884 15 C -0.160 4.160 16 C 0.031 3.969 17 N -0.310 5.310 18 C -0.398 4.398 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.533 5.533 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.049 3.951 27 C -0.117 4.117 28 H 0.092 0.908 29 C -0.017 4.017 30 C -0.120 4.120 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.042 0.958 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.007 -7.175 21.202 23.772 hybrid contribution -0.337 0.176 -0.996 1.066 sum -8.344 -6.999 20.207 22.955 Atomic orbital electron populations 1.21747 0.94733 1.01646 1.02205 1.20542 0.96123 0.92733 1.02879 1.19821 0.99208 0.96112 0.93074 1.20971 1.00550 0.95010 0.97342 1.21052 0.99666 0.94979 0.97787 1.20956 0.99829 1.00001 0.91993 1.19277 0.98631 0.94369 0.93632 1.20666 0.94673 1.02471 0.96117 1.20119 0.89283 0.79325 0.79587 1.90712 1.58427 1.39136 1.53421 1.48763 1.13580 1.51241 1.21624 1.22406 0.83201 1.00638 0.95021 1.22056 0.99455 0.95571 0.92904 0.88406 1.21718 0.99972 0.97397 0.96887 1.20261 1.00091 0.84742 0.91823 1.42661 1.68837 1.18221 1.01234 1.19151 1.09278 1.25575 0.85774 0.91622 1.24988 0.94742 1.01228 0.98469 1.70009 1.08107 1.49374 1.25767 0.86296 0.79459 0.77363 0.84098 1.20212 1.21805 1.21544 1.19250 0.96955 0.94214 0.84645 1.21631 0.95128 0.96956 0.97958 0.90755 1.22592 0.94630 0.92982 0.91539 1.20841 0.99601 0.93919 0.97636 0.92626 0.92486 0.92452 0.91011 0.91113 0.86387 0.86168 0.86342 0.87978 0.87982 0.91973 0.91466 0.92251 0.93544 0.96296 0.90330 0.93733 0.96813 0.95827 0.90511 0.90745 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.64 16 2 C -0.09 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.08 -0.85 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.18 9.70 -39.59 -0.38 -1.57 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 8 C -0.10 -1.08 4.85 -29.04 -0.14 -1.22 16 9 C 0.53 7.62 7.85 -10.99 -0.09 7.54 16 10 O -0.54 -9.75 16.37 5.56 0.09 -9.66 16 11 N -0.62 -8.71 3.34 -169.46 -0.57 -9.28 16 12 C 0.11 1.61 6.25 -2.28 -0.01 1.60 16 13 C -0.08 -1.29 3.60 -88.82 -0.32 -1.61 16 14 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 15 C -0.12 -2.17 4.83 -27.35 -0.13 -2.30 16 16 C 0.16 3.56 5.09 -5.76 -0.03 3.54 16 17 N -0.59 -13.90 3.23 -179.51 -0.58 -14.48 16 18 C -0.27 -7.12 9.27 -15.06 -0.14 -7.26 16 19 H 0.07 1.73 7.94 -52.48 -0.42 1.31 16 20 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 21 N -0.89 -25.01 10.89 55.49 0.60 -24.41 16 22 Si 0.90 21.22 29.62 -169.99 -5.03 16.19 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.18 3.42 5.75 -6.97 -0.04 3.38 16 27 C -0.10 -1.51 2.84 -90.91 -0.26 -1.77 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 C 0.10 1.40 5.48 -2.53 -0.01 1.38 16 30 C -0.10 -1.16 9.36 -39.58 -0.37 -1.53 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.10 0.96 8.09 -51.92 -0.42 0.54 16 40 H 0.10 0.90 7.81 -51.93 -0.41 0.50 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.81 6.68 -51.93 -0.35 0.46 16 45 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 46 H 0.08 2.06 5.79 -51.93 -0.30 1.76 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.01 0.27 7.81 -51.93 -0.41 -0.14 16 49 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 50 H 0.08 1.10 7.22 -51.93 -0.37 0.72 16 51 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 52 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -31.30 406.37 -11.89 -43.19 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.93 Total: -0.73 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.59 Total: -6.95 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.54 Total: -48.17 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.30 -11.89 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088017259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.880 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds