Wall clock time and date at job start Wed Apr 1 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38234 * 120.00095 * 2 1 4 4 C 1.38241 * 119.99918 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99607 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99848 * 0.06939 * 4 3 2 7 7 C 1.38234 * 120.00130 * 359.88497 * 6 4 3 8 8 C 1.50705 * 119.99991 * 180.11334 * 7 6 4 9 9 C 1.50705 * 109.46717 * 269.98083 * 8 7 6 10 10 O 1.21282 * 120.00427 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99434 * 180.02562 * 9 8 7 12 12 C 1.47386 * 125.73879 * 179.97438 * 11 9 8 13 13 C 1.55410 * 106.73764 * 179.05885 * 12 11 9 14 14 H 1.09005 * 112.75516 * 146.41397 * 13 12 11 15 15 C 1.52906 * 106.56724 * 270.28473 * 13 12 11 16 16 C 1.51880 * 111.49300 * 169.08932 * 15 13 12 17 17 N 1.44345 * 113.48254 * 321.32670 * 16 15 13 18 18 C 1.36940 * 116.42711 * 187.48233 * 17 16 15 19 19 H 1.07995 * 120.00255 * 153.66212 * 18 17 16 20 20 C 1.38810 * 119.99601 * 333.65626 * 18 17 16 21 21 N 1.31614 * 120.00488 * 335.44723 * 20 18 17 22 22 Si 1.86809 * 119.99628 * 155.44932 * 20 18 17 23 23 H 1.48495 * 109.46873 * 94.84842 * 22 20 18 24 24 H 1.48502 * 109.46719 * 214.84471 * 22 20 18 25 25 H 1.48495 * 109.46867 * 334.84357 * 22 20 18 26 26 C 1.43978 * 127.14773 * 7.50400 * 17 16 15 27 27 C 1.49781 * 116.29890 * 2.84986 * 26 17 16 28 28 H 1.09005 * 109.25362 * 141.41025 * 27 26 17 29 29 C 1.47928 * 125.74508 * 359.68885 * 11 9 8 30 30 C 1.38230 * 119.99964 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46970 * 89.99932 * 1 2 3 32 32 H 1.08990 * 109.47614 * 210.00203 * 1 2 3 33 33 H 1.09001 * 109.47420 * 330.00750 * 1 2 3 34 34 H 1.08003 * 119.99945 * 359.69755 * 3 2 1 35 35 H 1.09008 * 109.46689 * 90.00188 * 5 4 3 36 36 H 1.09005 * 109.46876 * 209.99533 * 5 4 3 37 37 H 1.08989 * 109.47515 * 330.00311 * 5 4 3 38 38 H 1.08003 * 119.99795 * 179.97438 * 6 4 3 39 39 H 1.08999 * 109.46942 * 29.97295 * 8 7 6 40 40 H 1.08995 * 109.46889 * 149.98095 * 8 7 6 41 41 H 1.09001 * 110.00446 * 298.38465 * 12 11 9 42 42 H 1.09003 * 110.00159 * 59.73739 * 12 11 9 43 43 H 1.08995 * 109.04536 * 290.43950 * 15 13 12 44 44 H 1.08998 * 109.04220 * 49.31929 * 15 13 12 45 45 H 1.09002 * 108.95617 * 199.98276 * 16 15 13 46 46 H 1.09000 * 108.02176 * 82.01749 * 16 15 13 47 47 H 0.97003 * 120.00272 * 179.97438 * 21 20 18 48 48 H 1.08997 * 108.11738 * 241.07445 * 26 17 16 49 49 H 1.09001 * 108.11685 * 124.62528 * 26 17 16 50 50 H 1.09005 * 110.56559 * 274.14701 * 29 11 9 51 51 H 1.09004 * 110.56474 * 36.99727 * 29 11 9 52 52 H 1.08006 * 119.99806 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 -0.0001 -0.0004 7 6 3.5805 -1.1972 0.0006 8 6 4.3339 -2.5023 0.0022 9 6 4.5852 -2.9390 -1.4182 10 8 4.1908 -2.2577 -2.3409 11 7 5.2473 -4.0871 -1.6631 12 6 5.5607 -4.6327 -2.9959 13 6 6.3499 -5.9515 -2.7653 14 1 6.1446 -6.7043 -3.5265 15 6 7.8292 -5.5695 -2.7049 16 6 8.6837 -6.7277 -2.2200 17 7 8.0639 -7.4993 -1.1693 18 6 8.8417 -8.4585 -0.5775 19 1 8.6391 -8.7677 0.4372 20 6 9.8906 -9.0333 -1.2820 21 7 9.8679 -9.0515 -2.5978 22 14 11.3344 -9.7813 -0.3624 23 1 11.1116 -11.2397 -0.1934 24 1 12.5827 -9.5574 -1.1348 25 1 11.4564 -9.1412 0.9720 26 6 6.7175 -7.3717 -0.6754 27 6 5.8486 -6.3680 -1.3690 28 1 4.8377 -6.7665 -1.4554 29 6 5.7868 -5.0088 -0.6394 30 6 2.1981 -1.1971 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6582 2.1325 -0.0049 35 1 4.5153 2.8175 1.0276 36 1 5.2867 2.3715 -0.5134 37 1 3.7452 3.2615 -0.5145 38 1 5.3517 -0.0001 -0.0004 39 1 5.2864 -2.3714 0.5158 40 1 3.7448 -3.2613 0.5168 41 1 4.6393 -4.8397 -3.5402 42 1 6.1729 -3.9244 -3.5541 43 1 8.1574 -5.2597 -3.6971 44 1 7.9532 -4.7355 -2.0142 45 1 9.6341 -6.3381 -1.8550 46 1 8.8769 -7.3830 -3.0693 47 1 10.6010 -9.4529 -3.0901 48 1 6.7676 -7.1046 0.3801 49 1 6.2353 -8.3464 -0.7499 50 1 6.7824 -4.6935 -0.3270 51 1 5.1153 -5.0647 0.2174 52 1 1.6581 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088090184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:35 Heat of formation + Delta-G solvation = 3.863168 kcal Electronic energy + Delta-G solvation = -29840.442902 eV Core-core repulsion = 25997.645604 eV Total energy + Delta-G solvation = -3842.797298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.49341 -39.66083 -38.22709 -35.63387 -33.68266 -33.67107 -32.61091 -31.57374 -30.33958 -28.89331 -27.74025 -27.02050 -26.85437 -25.46246 -23.56521 -22.23572 -21.71167 -20.92610 -20.89913 -19.03627 -17.84244 -17.21772 -16.81884 -16.45491 -16.19743 -15.63319 -15.27534 -14.92204 -14.47417 -14.34186 -14.14943 -13.91561 -13.76579 -13.42223 -13.32518 -13.16321 -13.10924 -13.06145 -12.84888 -12.75241 -12.58964 -12.31347 -12.21686 -11.81903 -11.78509 -11.60951 -11.28603 -11.16093 -11.12604 -11.11638 -10.76718 -10.52267 -10.29062 -10.24412 -9.93366 -9.72770 -9.65675 -9.58414 -8.72215 -8.65597 -8.52412 -8.49508 -6.64603 -5.64590 -3.28609 1.21047 1.26559 2.69234 3.02915 3.35889 3.44077 3.47373 3.62582 4.45972 4.47051 4.57511 4.57775 4.61570 4.74012 4.96973 4.98770 5.05475 5.11037 5.13505 5.15769 5.30679 5.35027 5.36068 5.37847 5.39858 5.41077 5.43031 5.51950 5.56875 5.63708 5.65421 5.67933 5.84902 5.90511 5.98807 6.03880 6.05526 6.13759 6.20409 6.37480 6.40494 6.40969 6.50666 6.51595 6.56139 6.64357 6.77317 6.83622 6.90479 7.28949 7.60148 7.79743 7.91007 8.22795 8.50565 9.26792 9.96829 10.25897 11.21581 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.002109 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.063603 B =13272.956387 C =13472.300130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.099 4.099 9 C 0.529 3.471 10 O -0.540 6.540 11 N -0.618 5.618 12 C 0.110 3.890 13 C -0.081 4.081 14 H 0.098 0.902 15 C -0.122 4.122 16 C 0.156 3.844 17 N -0.585 5.585 18 C -0.268 4.268 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.889 5.889 22 Si 0.897 3.103 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.176 3.824 27 C -0.097 4.097 28 H 0.074 0.926 29 C 0.105 3.895 30 C -0.110 4.110 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.080 0.920 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.024 0.976 50 H 0.077 0.923 51 H 0.074 0.926 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 17.747 5.321 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.139 4.139 9 C 0.317 3.683 10 O -0.417 6.417 11 N -0.352 5.352 12 C -0.013 4.013 13 C -0.100 4.100 14 H 0.116 0.884 15 C -0.160 4.160 16 C 0.031 3.969 17 N -0.310 5.310 18 C -0.398 4.398 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.049 3.951 27 C -0.117 4.117 28 H 0.092 0.908 29 C -0.017 4.017 30 C -0.129 4.129 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.042 0.958 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.920 18.193 4.693 23.992 hybrid contribution 0.914 -0.535 0.398 1.131 sum -14.006 17.658 5.091 23.106 Atomic orbital electron populations 1.20773 0.91270 1.02566 1.02334 1.19822 0.95920 0.93028 0.99614 1.20851 0.93481 0.97382 1.02433 1.19830 0.93810 0.95151 0.99544 1.20778 0.99987 0.94052 1.02166 1.20831 0.99532 0.91438 1.01002 1.19253 0.93496 0.93544 0.99169 1.20664 1.02261 0.96009 0.94962 1.20119 0.77564 0.79498 0.91120 1.90713 1.51278 1.53338 1.46341 1.48761 1.55680 1.22020 1.08754 1.22407 0.99196 0.95430 0.84230 1.22057 0.95753 0.94854 0.97321 0.88415 1.21721 0.94046 0.99762 1.00466 1.20266 0.91895 0.90781 0.93933 1.42666 1.07326 1.38977 1.41993 1.19110 1.09599 1.15682 0.95426 0.91635 1.24955 1.00832 0.98629 0.95019 1.70003 1.31691 1.46236 1.05342 0.86362 0.82649 0.78872 0.79416 1.21495 1.21550 1.20448 1.19244 0.85754 0.94933 0.95123 1.21630 1.00257 0.94359 0.95419 0.90757 1.22591 0.99108 0.89094 0.90953 1.20813 0.93325 0.97564 1.01150 0.91208 0.91585 0.91685 0.86363 0.91253 0.91514 0.91652 0.86329 0.87949 0.87993 0.91980 0.91469 0.92247 0.93541 0.96279 0.90315 0.93702 0.96804 0.95847 0.90510 0.90747 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 6 C -0.11 -1.28 9.36 -39.59 -0.37 -1.65 16 7 C -0.05 -0.65 4.37 -104.62 -0.46 -1.11 16 8 C -0.10 -1.09 4.85 -29.03 -0.14 -1.23 16 9 C 0.53 7.69 7.85 -10.98 -0.09 7.60 16 10 O -0.54 -9.81 16.37 5.56 0.09 -9.72 16 11 N -0.62 -8.76 3.34 -169.45 -0.57 -9.33 16 12 C 0.11 1.62 6.25 -2.28 -0.01 1.60 16 13 C -0.08 -1.29 3.60 -88.82 -0.32 -1.61 16 14 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 15 C -0.12 -2.18 4.83 -27.35 -0.13 -2.31 16 16 C 0.16 3.58 5.07 -5.76 -0.03 3.55 16 17 N -0.59 -13.93 3.23 -179.52 -0.58 -14.51 16 18 C -0.27 -7.15 9.27 -15.06 -0.14 -7.29 16 19 H 0.07 1.72 7.94 -52.49 -0.42 1.30 16 20 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 21 N -0.89 -25.03 10.87 55.49 0.60 -24.43 16 22 Si 0.90 21.23 29.62 -169.99 -5.03 16.20 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.18 3.42 5.75 -6.98 -0.04 3.38 16 27 C -0.10 -1.51 2.84 -90.91 -0.26 -1.77 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 C 0.10 1.40 5.48 -2.53 -0.01 1.39 16 30 C -0.11 -1.26 9.36 -39.59 -0.37 -1.63 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.06 0.45 8.08 -51.94 -0.42 0.03 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.10 0.92 7.81 -51.93 -0.41 0.51 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.81 6.68 -51.93 -0.35 0.46 16 45 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.08 2.07 5.80 -51.93 -0.30 1.77 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.01 0.27 7.81 -51.93 -0.41 -0.14 16 49 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 50 H 0.08 1.10 7.22 -51.93 -0.37 0.73 16 51 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 52 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -31.54 406.26 -11.63 -43.17 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.93 Total: -0.83 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.34 Total: -6.67 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.54 Total: -48.26 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.54 -11.63 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088090184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.035 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds