Wall clock time and date at job start Wed Apr 1 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 120.00216 * 2 1 4 4 C 1.38217 * 119.99875 * 180.23358 * 3 2 1 5 5 C 1.38247 * 120.00379 * 359.53421 * 4 3 2 6 6 C 1.50700 * 120.00429 * 180.25576 * 5 4 3 7 7 C 1.38212 * 119.99811 * 0.27894 * 5 4 3 8 8 C 1.50702 * 120.00081 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47009 * 84.99818 * 8 7 5 10 10 O 1.21283 * 120.00373 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.47380 * 125.74331 * 180.02562 * 11 9 8 13 13 C 1.55412 * 106.73661 * 179.02945 * 12 11 9 14 14 H 1.09001 * 112.76344 * 146.41119 * 13 12 11 15 15 C 1.52915 * 106.56924 * 270.27879 * 13 12 11 16 16 C 1.51576 * 111.66133 * 169.89191 * 15 13 12 17 17 N 1.44346 * 113.01576 * 320.11796 * 16 15 13 18 18 C 1.36933 * 116.42950 * 188.03284 * 17 16 15 19 19 H 1.07994 * 120.00341 * 150.48147 * 18 17 16 20 20 C 1.38815 * 119.99550 * 330.48789 * 18 17 16 21 21 N 1.31622 * 120.00148 * 150.03824 * 20 18 17 22 22 Si 1.86802 * 120.00163 * 330.03020 * 20 18 17 23 23 H 1.48497 * 109.46912 * 94.76455 * 22 20 18 24 24 H 1.48494 * 109.47211 * 214.76575 * 22 20 18 25 25 H 1.48503 * 109.47053 * 334.76763 * 22 20 18 26 26 C 1.43980 * 127.14547 * 8.01303 * 17 16 15 27 27 C 1.50323 * 116.60220 * 3.60253 * 26 17 16 28 28 H 1.08997 * 110.12371 * 140.46406 * 27 26 17 29 29 C 1.47936 * 125.73775 * 359.69054 * 11 9 8 30 30 C 1.38214 * 119.99980 * 179.83587 * 2 1 3 31 31 H 1.08997 * 109.46592 * 270.16953 * 1 2 3 32 32 H 1.09008 * 109.46758 * 30.16472 * 1 2 3 33 33 H 1.08993 * 109.47220 * 150.16853 * 1 2 3 34 34 H 1.08000 * 120.00065 * 0.04542 * 3 2 1 35 35 H 1.08001 * 119.99717 * 179.80548 * 4 3 2 36 36 H 1.08998 * 109.47465 * 89.99942 * 6 5 4 37 37 H 1.09003 * 109.46892 * 210.00130 * 6 5 4 38 38 H 1.08998 * 109.47103 * 329.99748 * 6 5 4 39 39 H 1.09003 * 109.47143 * 204.99534 * 8 7 5 40 40 H 1.08997 * 109.47354 * 324.99484 * 8 7 5 41 41 H 1.08999 * 110.00446 * 298.34813 * 12 11 9 42 42 H 1.08997 * 110.00354 * 59.71040 * 12 11 9 43 43 H 1.08997 * 109.04196 * 290.45133 * 15 13 12 44 44 H 1.09000 * 109.03577 * 49.40382 * 15 13 12 45 45 H 1.08994 * 108.77850 * 81.03816 * 16 15 13 46 46 H 1.09004 * 108.76873 * 199.32997 * 16 15 13 47 47 H 0.96994 * 119.99855 * 179.97438 * 21 20 18 48 48 H 1.09002 * 108.11206 * 124.66854 * 26 17 16 49 49 H 1.09003 * 108.11206 * 241.32639 * 26 17 16 50 50 H 1.09000 * 110.56778 * 274.18143 * 29 11 9 51 51 H 1.09002 * 110.56473 * 37.03593 * 29 11 9 52 52 H 1.07995 * 119.99717 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0005 7 6 3.5807 -1.1969 0.0039 8 6 4.3342 -2.5020 0.0086 9 6 4.6922 -2.8702 1.4254 10 8 4.3671 -2.1446 2.3412 11 7 5.3728 -4.0065 1.6749 12 6 5.7864 -4.4878 3.0051 13 6 6.5155 -5.8424 2.7841 14 1 7.3244 -6.0070 3.4959 15 6 5.4440 -6.9310 2.8550 16 6 5.9833 -8.2766 2.4123 17 7 6.8686 -8.1837 1.2760 18 6 7.2619 -9.3676 0.7114 19 1 7.4943 -9.4125 -0.3423 20 6 7.3616 -10.5101 1.4935 21 7 7.1522 -11.6943 0.9584 22 14 7.7934 -10.3671 3.3053 23 1 6.5463 -10.3474 4.1112 24 1 8.6254 -11.5289 3.7091 25 1 8.5516 -9.1112 3.5358 26 6 7.3833 -6.9830 0.6708 27 6 7.0217 -5.6849 1.3372 28 1 7.8760 -5.0081 1.3281 29 6 5.8242 -4.9839 0.6603 30 6 2.1980 -1.1970 0.0034 31 1 -0.3632 0.0030 1.0277 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5112 34 1 1.6584 2.1327 0.0007 35 1 4.1205 2.1326 -0.0081 36 1 6.1418 0.0039 1.0282 37 1 6.1422 -0.8920 -0.5098 38 1 6.1423 0.8879 -0.5167 39 1 3.7093 -3.2839 -0.4232 40 1 5.2450 -2.3979 -0.5810 41 1 6.4646 -3.7703 3.4669 42 1 4.9108 -4.6344 3.6374 43 1 5.0862 -7.0115 3.8814 44 1 4.6112 -6.6528 2.2090 45 1 6.5252 -8.7280 3.2433 46 1 5.1446 -8.9215 2.1497 47 1 7.2223 -12.4926 1.5048 48 1 8.4711 -7.0503 0.6561 49 1 7.0345 -6.9474 -0.3613 50 1 5.0327 -5.7001 0.4397 51 1 6.1436 -4.4729 -0.2480 52 1 1.6580 -2.1322 0.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088091571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:39 Heat of formation + Delta-G solvation = 14.284007 kcal Electronic energy + Delta-G solvation = -30299.974984 eV Core-core repulsion = 26457.629568 eV Total energy + Delta-G solvation = -3842.345416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.67216 -39.78915 -38.33005 -35.87121 -34.40324 -32.89944 -32.39612 -31.72362 -30.91673 -29.48985 -28.72876 -27.47949 -25.69495 -24.96816 -23.44778 -22.68100 -22.31589 -21.68040 -20.54023 -19.06099 -18.25079 -17.26620 -16.96355 -16.37868 -16.05413 -15.75651 -15.39465 -15.38190 -14.82006 -14.44535 -14.23271 -14.12615 -13.94407 -13.57496 -13.44910 -13.25380 -13.17092 -12.96626 -12.93454 -12.79838 -12.66801 -12.41120 -12.15872 -12.12117 -11.95685 -11.65198 -11.57393 -11.48983 -11.12459 -11.07104 -11.01069 -10.72741 -10.46049 -10.25915 -9.98871 -9.92854 -9.86454 -9.42455 -8.90808 -8.63673 -8.52922 -8.41118 -6.85264 -6.06729 -3.37359 1.17212 1.25092 2.61767 2.93957 3.32875 3.47398 3.51907 3.59438 4.41038 4.44872 4.50680 4.55846 4.58076 4.69524 4.81251 4.85187 4.90325 4.92748 4.95807 5.05085 5.21749 5.22449 5.25764 5.33825 5.36272 5.37566 5.39152 5.51134 5.53193 5.55812 5.56518 5.62249 5.71115 5.73674 5.80189 5.90673 5.93767 6.01637 6.05512 6.12164 6.21464 6.25869 6.28168 6.34655 6.42819 6.50082 6.54080 6.65248 6.78067 6.85626 6.87851 7.49889 8.03549 8.15029 8.32889 9.06023 9.74236 9.97783 11.08923 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.002332 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.857359 B =12002.073762 C =12177.588929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.118 4.118 7 C -0.060 4.060 8 C -0.102 4.102 9 C 0.531 3.469 10 O -0.537 6.537 11 N -0.619 5.619 12 C 0.112 3.888 13 C -0.087 4.087 14 H 0.097 0.903 15 C -0.123 4.123 16 C 0.156 3.844 17 N -0.599 5.599 18 C -0.284 4.284 19 H 0.081 0.919 20 C 0.038 3.962 21 N -0.889 5.889 22 Si 0.878 3.122 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.276 1.276 26 C 0.175 3.825 27 C -0.100 4.100 28 H 0.080 0.920 29 C 0.103 3.897 30 C -0.103 4.103 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.010 0.990 46 H 0.045 0.955 47 H 0.263 0.737 48 H 0.030 0.970 49 H 0.026 0.974 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 23.800 -2.554 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.174 4.174 7 C -0.061 4.061 8 C -0.141 4.141 9 C 0.319 3.681 10 O -0.414 6.414 11 N -0.354 5.354 12 C -0.011 4.011 13 C -0.106 4.106 14 H 0.115 0.885 15 C -0.161 4.161 16 C 0.031 3.969 17 N -0.325 5.325 18 C -0.412 4.412 19 H 0.099 0.901 20 C -0.163 4.163 21 N -0.530 5.530 22 Si 0.709 3.291 23 H -0.215 1.215 24 H -0.233 1.233 25 H -0.202 1.202 26 C 0.049 3.951 27 C -0.120 4.120 28 H 0.098 0.902 29 C -0.019 4.019 30 C -0.121 4.121 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.044 0.956 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.817 24.154 -2.062 25.471 hybrid contribution 0.350 -0.195 1.148 1.216 sum -7.467 23.959 -0.915 25.112 Atomic orbital electron populations 1.20769 0.91285 1.02586 1.02292 1.19828 0.95966 0.93074 1.00490 1.20965 0.94139 0.97359 1.01183 1.20932 0.94145 0.97252 1.01220 1.19661 0.95879 0.92567 0.99251 1.20850 0.91457 1.02500 1.02590 1.19107 0.93324 0.93138 1.00511 1.20693 1.02086 0.96355 0.95001 1.20112 0.77355 0.79585 0.91027 1.90714 1.53620 1.50435 1.46638 1.48761 1.55871 1.21669 1.09095 1.22345 0.98914 0.95256 0.84562 1.22109 0.98037 0.93135 0.97342 0.88499 1.21602 0.97659 0.95597 1.01203 1.20184 0.93177 0.93993 0.89551 1.42877 1.52133 1.02522 1.34935 1.18786 1.43806 0.84728 0.93837 0.90092 1.25267 0.98515 0.94954 0.97590 1.69979 1.47837 0.98075 1.37115 0.86972 0.78307 0.76366 0.87476 1.21478 1.23267 1.20169 1.19401 0.96823 0.83910 0.94985 1.21816 0.96997 0.98145 0.94997 0.90188 1.22636 0.97190 0.90801 0.91270 1.20848 0.93238 0.97670 1.00319 0.91273 0.91693 0.91591 0.86303 0.86191 0.90946 0.91535 0.91601 0.88023 0.87733 0.91790 0.91353 0.91786 0.91873 0.97293 0.93658 0.92682 0.95182 0.95592 0.90338 0.90504 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 5 C -0.07 -0.81 5.88 -104.63 -0.62 -1.43 16 6 C -0.12 -1.09 9.60 36.01 0.35 -0.74 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.15 16 8 C -0.10 -1.06 4.34 -29.03 -0.13 -1.19 16 9 C 0.53 7.19 7.85 -10.98 -0.09 7.10 16 10 O -0.54 -9.21 16.37 5.56 0.09 -9.11 16 11 N -0.62 -8.02 3.34 -169.45 -0.57 -8.59 16 12 C 0.11 1.49 6.25 -2.28 -0.01 1.47 16 13 C -0.09 -1.26 3.60 -88.81 -0.32 -1.58 16 14 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.12 -1.98 4.79 -27.50 -0.13 -2.11 16 16 C 0.16 3.29 4.83 -5.91 -0.03 3.26 16 17 N -0.60 -13.50 2.96 -179.38 -0.53 -14.03 16 18 C -0.28 -7.65 9.63 -15.06 -0.15 -7.80 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 20 C 0.04 1.07 5.16 -17.43 -0.09 0.98 16 21 N -0.89 -26.53 13.97 55.49 0.78 -25.75 16 22 Si 0.88 21.98 24.82 -169.99 -4.22 17.76 16 23 H -0.29 -7.00 6.86 56.52 0.39 -6.61 16 24 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.17 3.17 5.73 -6.72 -0.04 3.13 16 27 C -0.10 -1.41 2.92 -90.65 -0.27 -1.67 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 C 0.10 1.25 5.44 -2.52 -0.01 1.24 16 30 C -0.10 -1.15 9.34 -39.58 -0.37 -1.52 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.56 6.03 -51.93 -0.31 0.24 16 38 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 40 H 0.10 0.90 5.89 -51.93 -0.31 0.59 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.98 6.68 -51.93 -0.35 0.64 16 45 H 0.01 0.23 3.05 -51.93 -0.16 0.07 16 46 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 49 H 0.03 0.47 7.80 -51.93 -0.40 0.06 16 50 H 0.08 1.03 7.21 -51.93 -0.37 0.65 16 51 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 52 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -32.68 397.47 -10.43 -43.11 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.60 Total: -2.18 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.38 Total: -7.19 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.32 Total: -48.37 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.22 Total: 17.76 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.68 -10.43 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088091571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.396 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds