Wall clock time and date at job start Wed Apr 1 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 120.00216 * 2 1 4 4 C 1.38217 * 119.99875 * 180.23358 * 3 2 1 5 5 C 1.38247 * 120.00379 * 359.53421 * 4 3 2 6 6 C 1.50700 * 120.00429 * 180.25576 * 5 4 3 7 7 C 1.38212 * 119.99811 * 0.27894 * 5 4 3 8 8 C 1.50702 * 120.00081 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47009 * 84.99818 * 8 7 5 10 10 O 1.21283 * 120.00373 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.47380 * 125.74331 * 180.02562 * 11 9 8 13 13 C 1.55412 * 106.73661 * 179.02945 * 12 11 9 14 14 H 1.09001 * 112.76344 * 146.41119 * 13 12 11 15 15 C 1.52915 * 106.56924 * 270.27879 * 13 12 11 16 16 C 1.51576 * 111.66133 * 169.89191 * 15 13 12 17 17 N 1.44346 * 113.01576 * 320.11796 * 16 15 13 18 18 C 1.36933 * 116.42950 * 188.03284 * 17 16 15 19 19 H 1.07994 * 120.00341 * 150.48147 * 18 17 16 20 20 C 1.38815 * 119.99550 * 330.48789 * 18 17 16 21 21 N 1.31622 * 120.00148 * 150.03824 * 20 18 17 22 22 Si 1.86802 * 120.00163 * 330.03020 * 20 18 17 23 23 H 1.48497 * 109.46912 * 94.76455 * 22 20 18 24 24 H 1.48494 * 109.47211 * 214.76575 * 22 20 18 25 25 H 1.48503 * 109.47053 * 334.76763 * 22 20 18 26 26 C 1.43980 * 127.14547 * 8.01303 * 17 16 15 27 27 C 1.50323 * 116.60220 * 3.60253 * 26 17 16 28 28 H 1.08997 * 110.12371 * 140.46406 * 27 26 17 29 29 C 1.47936 * 125.73775 * 359.69054 * 11 9 8 30 30 C 1.38214 * 119.99980 * 179.83587 * 2 1 3 31 31 H 1.08997 * 109.46592 * 270.16953 * 1 2 3 32 32 H 1.09008 * 109.46758 * 30.16472 * 1 2 3 33 33 H 1.08993 * 109.47220 * 150.16853 * 1 2 3 34 34 H 1.08000 * 120.00065 * 0.04542 * 3 2 1 35 35 H 1.08001 * 119.99717 * 179.80548 * 4 3 2 36 36 H 1.08998 * 109.47465 * 89.99942 * 6 5 4 37 37 H 1.09003 * 109.46892 * 210.00130 * 6 5 4 38 38 H 1.08998 * 109.47103 * 329.99748 * 6 5 4 39 39 H 1.09003 * 109.47143 * 204.99534 * 8 7 5 40 40 H 1.08997 * 109.47354 * 324.99484 * 8 7 5 41 41 H 1.08999 * 110.00446 * 298.34813 * 12 11 9 42 42 H 1.08997 * 110.00354 * 59.71040 * 12 11 9 43 43 H 1.08997 * 109.04196 * 290.45133 * 15 13 12 44 44 H 1.09000 * 109.03577 * 49.40382 * 15 13 12 45 45 H 1.08994 * 108.77850 * 81.03816 * 16 15 13 46 46 H 1.09004 * 108.76873 * 199.32997 * 16 15 13 47 47 H 0.96994 * 119.99855 * 179.97438 * 21 20 18 48 48 H 1.09002 * 108.11206 * 124.66854 * 26 17 16 49 49 H 1.09003 * 108.11206 * 241.32639 * 26 17 16 50 50 H 1.09000 * 110.56778 * 274.18143 * 29 11 9 51 51 H 1.09002 * 110.56473 * 37.03593 * 29 11 9 52 52 H 1.07995 * 119.99717 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0005 7 6 3.5807 -1.1969 0.0039 8 6 4.3342 -2.5020 0.0086 9 6 4.6922 -2.8702 1.4254 10 8 4.3671 -2.1446 2.3412 11 7 5.3728 -4.0065 1.6749 12 6 5.7864 -4.4878 3.0051 13 6 6.5155 -5.8424 2.7841 14 1 7.3244 -6.0070 3.4959 15 6 5.4440 -6.9310 2.8550 16 6 5.9833 -8.2766 2.4123 17 7 6.8686 -8.1837 1.2760 18 6 7.2619 -9.3676 0.7114 19 1 7.4943 -9.4125 -0.3423 20 6 7.3616 -10.5101 1.4935 21 7 7.1522 -11.6943 0.9584 22 14 7.7934 -10.3671 3.3053 23 1 6.5463 -10.3474 4.1112 24 1 8.6254 -11.5289 3.7091 25 1 8.5516 -9.1112 3.5358 26 6 7.3833 -6.9830 0.6708 27 6 7.0217 -5.6849 1.3372 28 1 7.8760 -5.0081 1.3281 29 6 5.8242 -4.9839 0.6603 30 6 2.1980 -1.1970 0.0034 31 1 -0.3632 0.0030 1.0277 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5112 34 1 1.6584 2.1327 0.0007 35 1 4.1205 2.1326 -0.0081 36 1 6.1418 0.0039 1.0282 37 1 6.1422 -0.8920 -0.5098 38 1 6.1423 0.8879 -0.5167 39 1 3.7093 -3.2839 -0.4232 40 1 5.2450 -2.3979 -0.5810 41 1 6.4646 -3.7703 3.4669 42 1 4.9108 -4.6344 3.6374 43 1 5.0862 -7.0115 3.8814 44 1 4.6112 -6.6528 2.2090 45 1 6.5252 -8.7280 3.2433 46 1 5.1446 -8.9215 2.1497 47 1 7.2223 -12.4926 1.5048 48 1 8.4711 -7.0503 0.6561 49 1 7.0345 -6.9474 -0.3613 50 1 5.0327 -5.7001 0.4397 51 1 6.1436 -4.4729 -0.2480 52 1 1.6580 -2.1322 0.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088091571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:38 Heat of formation + Delta-G solvation = -3.591223 kcal Electronic energy + Delta-G solvation = -30300.750112 eV Core-core repulsion = 26457.629568 eV Total energy + Delta-G solvation = -3843.120545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.72418 -40.69716 -39.46784 -37.39044 -35.13828 -34.38491 -33.47388 -33.07745 -32.46076 -30.13808 -29.85909 -28.47524 -27.18516 -25.66217 -24.94194 -24.02716 -23.39734 -22.85729 -21.35792 -20.02316 -19.64886 -18.94597 -18.05598 -17.38913 -17.25414 -16.86443 -16.68980 -16.38527 -15.90111 -15.78869 -15.49597 -15.44982 -14.90765 -14.81164 -14.58676 -14.36972 -14.15730 -14.03650 -13.95398 -13.81135 -13.65212 -13.54595 -13.49755 -13.08349 -12.96116 -12.80767 -12.73542 -12.55298 -12.46175 -12.36160 -12.07486 -11.84085 -11.82599 -11.68643 -11.46691 -11.38051 -11.22677 -10.94125 -10.51910 -9.68849 -9.67632 -9.26750 -8.75893 -8.23858 -5.49970 0.41290 0.49428 1.31689 1.41445 1.51741 1.61044 1.95630 2.42210 2.82078 2.99459 3.30032 3.39023 3.61068 3.66168 3.74271 3.86140 3.92080 4.02022 4.03553 4.13088 4.20968 4.29850 4.34852 4.37334 4.42196 4.51456 4.53776 4.58581 4.62873 4.69598 4.73166 4.79764 4.80239 4.83234 4.84977 4.86045 4.90522 5.00692 5.00878 5.05989 5.11001 5.12373 5.21420 5.23471 5.30453 5.38473 5.41982 5.53977 5.70525 5.74734 5.94580 6.15894 6.16246 6.48847 7.06672 7.13381 7.78027 7.96128 8.95956 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.002332 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.857359 B =12002.073762 C =12177.588929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.128 4.128 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.078 4.078 8 C -0.096 4.096 9 C 0.532 3.468 10 O -0.577 6.577 11 N -0.617 5.617 12 C 0.118 3.882 13 C -0.085 4.085 14 H 0.099 0.901 15 C -0.114 4.114 16 C 0.154 3.846 17 N -0.606 5.606 18 C -0.274 4.274 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.939 3.061 23 H -0.279 1.279 24 H -0.312 1.312 25 H -0.267 1.267 26 C 0.172 3.828 27 C -0.095 4.095 28 H 0.104 0.896 29 C 0.110 3.890 30 C -0.123 4.123 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.069 0.931 45 H -0.004 1.004 46 H 0.021 0.979 47 H 0.263 0.737 48 H 0.023 0.977 49 H 0.031 0.969 50 H 0.070 0.930 51 H 0.108 0.892 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 26.520 -2.332 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.171 4.171 7 C -0.079 4.079 8 C -0.135 4.135 9 C 0.322 3.678 10 O -0.456 6.456 11 N -0.351 5.351 12 C -0.005 4.005 13 C -0.104 4.104 14 H 0.118 0.882 15 C -0.152 4.152 16 C 0.029 3.971 17 N -0.331 5.331 18 C -0.403 4.403 19 H 0.070 0.930 20 C -0.214 4.214 21 N -0.581 5.581 22 Si 0.770 3.230 23 H -0.206 1.206 24 H -0.241 1.241 25 H -0.193 1.193 26 C 0.047 3.953 27 C -0.115 4.115 28 H 0.122 0.878 29 C -0.012 4.012 30 C -0.141 4.141 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.013 0.987 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.126 0.874 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.964 26.907 -1.844 28.121 hybrid contribution 0.356 -1.010 0.984 1.454 sum -7.608 25.897 -0.860 27.005 Atomic orbital electron populations 1.20801 0.89720 1.03615 1.02629 1.20184 0.97338 0.93033 1.00011 1.21296 0.94366 0.98169 1.00640 1.21261 0.94610 0.97888 1.00793 1.19968 0.96883 0.92820 0.99477 1.20847 0.90437 1.03813 1.01990 1.19325 0.93672 0.93795 1.01068 1.20726 1.03235 0.96401 0.93177 1.20597 0.76449 0.78948 0.91806 1.90698 1.55194 1.51652 1.48105 1.48779 1.55614 1.21604 1.09084 1.22227 0.98742 0.94559 0.84929 1.22076 0.97628 0.92973 0.97694 0.88237 1.21523 0.98206 0.93290 1.02154 1.20167 0.91934 0.96575 0.88435 1.43015 1.52476 1.02582 1.35075 1.18798 1.42146 0.86555 0.92847 0.93044 1.25822 0.99374 0.94721 1.01468 1.70080 1.50440 0.98834 1.38746 0.85967 0.78091 0.76059 0.82902 1.20577 1.24095 1.19262 1.19496 0.96279 0.84211 0.95355 1.21716 0.98848 0.96305 0.94599 0.87797 1.22617 0.96029 0.90630 0.91946 1.21086 0.93584 0.98373 1.01010 0.91174 0.90229 0.91062 0.84278 0.84422 0.92351 0.90630 0.89971 0.86531 0.85576 0.91120 0.91730 0.90073 0.91238 0.98696 0.96122 0.92814 0.95850 0.95069 0.91129 0.87383 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.11 -2.02 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 4 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 5 C -0.09 -1.87 5.88 -19.87 -0.12 -1.99 16 6 C -0.11 -1.88 9.60 71.24 0.68 -1.20 16 7 C -0.08 -1.68 4.37 -19.86 -0.09 -1.77 16 8 C -0.10 -1.77 4.34 29.10 0.13 -1.65 16 9 C 0.53 13.20 7.85 87.66 0.69 13.88 16 10 O -0.58 -19.00 16.37 -3.04 -0.05 -19.05 16 11 N -0.62 -14.16 3.34 -808.41 -2.70 -16.86 16 12 C 0.12 2.81 6.25 87.04 0.54 3.36 16 13 C -0.08 -2.20 3.60 -9.62 -0.03 -2.23 16 14 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 15 C -0.11 -3.44 4.79 30.10 0.14 -3.30 16 16 C 0.15 6.35 4.83 86.31 0.42 6.76 16 17 N -0.61 -26.96 2.96 -721.43 -2.13 -29.09 16 18 C -0.27 -15.02 9.63 84.03 0.81 -14.22 16 19 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 20 C -0.02 -0.94 5.16 84.86 0.44 -0.51 16 21 N -0.94 -57.55 13.97 21.65 0.30 -57.25 16 22 Si 0.94 45.99 24.82 68.60 1.70 47.69 16 23 H -0.28 -13.10 6.86 99.48 0.68 -12.41 16 24 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 C 0.17 5.93 5.73 85.98 0.49 6.42 16 27 C -0.10 -2.39 2.92 -10.81 -0.03 -2.42 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 C 0.11 2.29 5.44 86.58 0.47 2.76 16 30 C -0.12 -2.60 9.34 22.27 0.21 -2.40 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.83 8.09 -2.38 -0.02 0.81 16 33 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.06 6.03 -2.39 -0.01 1.04 16 38 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 39 H 0.12 1.78 8.05 -2.39 -0.02 1.76 16 40 H 0.13 1.73 5.89 -2.39 -0.01 1.71 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.61 7.78 -2.39 -0.02 1.60 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 2.02 6.68 -2.39 -0.02 2.00 16 45 H 0.00 -0.18 3.05 -2.39 -0.01 -0.19 16 46 H 0.02 0.95 8.12 -2.38 -0.02 0.93 16 47 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 48 H 0.02 0.85 8.13 -2.39 -0.02 0.83 16 49 H 0.03 1.06 7.80 -2.39 -0.02 1.04 16 50 H 0.07 1.63 7.21 -2.39 -0.02 1.62 16 51 H 0.11 1.62 7.51 -2.39 -0.02 1.61 16 52 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.29 397.47 3.78 -68.51 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.87 Total: 11.70 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.78 Total: -5.66 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.53 Total: -103.20 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.70 Total: 47.69 kcal Total: -72.29 3.78 -68.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088091571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.922 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds