Wall clock time and date at job start Wed Apr 1 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47215 * 2 1 4 4 C 1.38229 * 120.00228 * 89.99767 * 3 2 1 5 5 C 1.38237 * 120.00132 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99806 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47096 * 90.00028 * 7 6 5 9 9 O 1.21287 * 119.99839 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.47178 * 125.65443 * 180.02562 * 10 8 7 12 12 C 1.55415 * 106.93453 * 178.81554 * 11 10 8 13 13 H 1.08998 * 112.44875 * 145.11933 * 12 11 10 14 14 C 1.53089 * 106.81186 * 268.54756 * 12 11 10 15 15 C 1.50214 * 112.32638 * 163.09901 * 14 12 11 16 16 N 1.47234 * 108.12940 * 303.36222 * 15 14 12 17 17 C 1.36936 * 121.39343 * 237.59880 * 16 15 14 18 18 H 1.08000 * 119.99954 * 151.92642 * 17 16 15 19 19 C 1.38808 * 120.00134 * 331.92422 * 17 16 15 20 20 N 1.31625 * 119.99921 * 159.18189 * 19 17 16 21 21 Si 1.86799 * 120.00138 * 339.18678 * 19 17 16 22 22 H 1.48500 * 109.47189 * 94.42093 * 21 19 17 23 23 H 1.48505 * 109.47089 * 214.41885 * 21 19 17 24 24 H 1.48500 * 109.47009 * 334.41745 * 21 19 17 25 25 C 1.46702 * 117.21211 * 57.58022 * 16 15 14 26 26 C 1.50811 * 111.25105 * 307.84904 * 25 16 15 27 27 H 1.09002 * 109.22908 * 167.57686 * 26 25 16 28 28 C 1.47850 * 125.64838 * 359.96804 * 10 8 7 29 29 C 1.38234 * 119.99829 * 0.26911 * 6 5 4 30 30 C 1.38228 * 120.00092 * 359.51662 * 29 6 5 31 31 H 1.08994 * 109.47282 * 59.99644 * 1 2 3 32 32 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46867 * 300.00077 * 1 2 3 34 34 H 1.09000 * 109.46867 * 239.99923 * 2 1 3 35 35 H 1.08999 * 109.47539 * 119.99929 * 2 1 3 36 36 H 1.07998 * 120.00051 * 359.97438 * 4 3 2 37 37 H 1.07996 * 120.00102 * 179.97438 * 5 4 3 38 38 H 1.08999 * 109.47107 * 329.99634 * 7 6 5 39 39 H 1.08995 * 109.46890 * 209.99757 * 7 6 5 40 40 H 1.09001 * 109.97614 * 59.43890 * 11 10 8 41 41 H 1.09003 * 109.96832 * 298.18157 * 11 10 8 42 42 H 1.09000 * 109.18521 * 284.35478 * 14 12 11 43 43 H 1.08997 * 109.18545 * 43.59870 * 14 12 11 44 44 H 1.09006 * 110.23070 * 183.31972 * 15 14 12 45 45 H 1.08997 * 109.03154 * 62.71851 * 15 14 12 46 46 H 0.97002 * 119.99709 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.12467 * 187.39441 * 25 16 15 48 48 H 1.09004 * 109.12367 * 68.30526 * 25 16 15 49 49 H 1.09004 * 110.52126 * 38.04606 * 28 10 8 50 50 H 1.09006 * 110.52723 * 275.30506 * 28 10 8 51 51 H 1.08008 * 119.99554 * 179.72417 * 29 6 5 52 52 H 1.08004 * 119.99885 * 180.26936 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1970 6 6 2.9555 4.0268 -0.0002 7 6 3.4578 5.4477 -0.0002 8 6 4.9648 5.4476 0.0012 9 8 5.5711 4.3972 0.0025 10 7 5.6387 6.6148 0.0019 11 6 7.1034 6.7597 0.0027 12 6 7.4075 8.2835 -0.0274 13 1 8.2980 8.5415 0.5459 14 6 7.5343 8.6807 -1.5004 15 6 7.4242 10.1651 -1.7026 16 7 6.1414 10.6110 -1.1338 17 6 5.2115 11.2650 -1.8972 18 1 4.1623 11.1894 -1.6526 19 6 5.6174 12.0250 -2.9855 20 7 4.7621 12.3108 -3.9443 21 14 7.3774 12.6422 -3.0894 22 1 8.1900 11.6889 -3.8870 23 1 7.3966 13.9759 -3.7423 24 1 7.9448 12.7525 -1.7215 25 6 5.9010 10.3250 0.2848 26 6 6.1241 8.8658 0.5937 27 1 6.1555 8.7284 1.6746 28 6 5.0292 7.9618 0.0009 29 6 2.7203 3.3768 -1.1973 30 6 2.2632 2.0723 -1.1972 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0823 1.5636 2.1324 37 1 2.9036 3.8849 2.1323 38 1 3.0937 5.9618 0.8893 39 1 3.0953 5.9612 -0.8906 40 1 7.5257 6.2783 -0.8794 41 1 7.5210 6.3145 0.9058 42 1 8.4959 8.3377 -1.8824 43 1 6.7343 8.2070 -2.0692 44 1 7.4600 10.4044 -2.7654 45 1 8.2483 10.6564 -1.1854 46 1 5.0457 12.8422 -4.7047 47 1 4.8731 10.5894 0.5332 48 1 6.5795 10.9260 0.8903 49 1 4.1384 7.9786 0.6288 50 1 4.7870 8.2710 -1.0160 51 1 2.8969 3.8872 -2.1326 52 1 2.0836 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088122296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:41 Heat of formation + Delta-G solvation = 6.652061 kcal Electronic energy + Delta-G solvation = -29951.898904 eV Core-core repulsion = 26109.222541 eV Total energy + Delta-G solvation = -3842.676362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.46453 -39.58239 -38.26260 -35.57332 -34.74350 -32.69402 -31.70144 -31.36272 -30.98645 -30.64211 -28.20044 -27.03338 -25.77076 -23.85290 -22.93549 -22.81452 -22.36536 -21.50451 -20.70273 -19.12599 -18.60624 -17.17143 -16.77171 -16.32527 -16.09503 -15.64994 -15.36693 -15.29595 -14.88845 -14.32713 -14.08671 -13.95486 -13.88372 -13.68912 -13.42524 -13.39934 -13.12519 -13.06096 -12.70812 -12.62478 -12.33153 -12.16804 -12.08395 -11.85932 -11.78922 -11.66459 -11.39066 -11.31947 -11.00429 -10.93948 -10.88147 -10.80159 -10.54274 -10.20890 -9.85482 -9.76776 -9.68336 -9.44581 -8.95101 -8.69390 -8.58061 -8.45168 -7.04498 -6.00415 -3.36700 1.23927 1.37637 2.75442 3.09848 3.28530 3.45495 3.48093 3.72219 4.48694 4.51756 4.56861 4.63303 4.71337 4.75847 4.84002 4.88549 4.93337 5.01284 5.05917 5.10726 5.21216 5.29552 5.32420 5.37395 5.43093 5.47312 5.52352 5.58697 5.62437 5.66490 5.72392 5.76175 5.86314 5.88359 5.95098 5.97330 6.00857 6.01856 6.22233 6.28127 6.33114 6.34093 6.38047 6.41470 6.52429 6.52690 6.55205 6.58257 6.64086 6.90318 6.94780 7.65621 7.88805 8.27088 8.28688 8.86428 9.65967 10.06130 11.15287 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.002294 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.296662 B =12204.115193 C =12835.736951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.064 4.064 7 C -0.100 4.100 8 C 0.529 3.471 9 O -0.543 6.543 10 N -0.617 5.617 11 C 0.113 3.887 12 C -0.084 4.084 13 H 0.090 0.910 14 C -0.129 4.129 15 C 0.125 3.875 16 N -0.603 5.603 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.025 3.975 20 N -0.907 5.907 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.158 3.842 26 C -0.109 4.109 27 H 0.071 0.929 28 C 0.107 3.893 29 C -0.101 4.101 30 C -0.117 4.117 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.121 0.879 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 -18.481 10.473 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.065 4.065 7 C -0.139 4.139 8 C 0.318 3.682 9 O -0.420 6.420 10 N -0.351 5.351 11 C -0.010 4.010 12 C -0.103 4.103 13 H 0.108 0.892 14 C -0.168 4.168 15 C 0.000 4.000 16 N -0.327 5.327 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.549 5.549 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.031 3.969 26 C -0.130 4.130 27 H 0.089 0.911 28 C -0.015 4.015 29 C -0.119 4.119 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.044 0.956 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.139 0.861 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.738 -19.011 10.308 21.946 hybrid contribution 1.097 0.556 -0.227 1.250 sum -2.641 -18.455 10.081 21.194 Atomic orbital electron populations 1.21747 0.94793 1.01544 1.02266 1.20529 0.96094 0.92829 1.02718 1.19854 0.99463 0.96096 0.93274 1.20918 1.00536 0.94767 0.97391 1.20938 0.98938 0.94877 0.97314 1.19291 0.98900 0.94709 0.93581 1.20661 0.92421 0.95387 1.05465 1.20133 0.89403 0.82287 0.76397 1.90703 1.70313 1.30656 1.50361 1.48685 1.07473 1.06160 1.72797 1.22270 0.80543 0.96833 1.01344 1.22123 0.98047 0.92499 0.97642 0.89157 1.21562 1.01142 0.99492 0.94618 1.20804 0.88519 0.92041 0.98656 1.44339 1.16957 1.66159 1.05271 1.18829 0.88699 1.23294 1.07760 0.89634 1.25269 0.97144 0.98191 0.96860 1.69836 1.35246 1.40886 1.08969 0.86929 0.86319 0.77608 0.77875 1.21742 1.23193 1.19476 1.20194 1.00029 0.90463 0.86221 1.21960 0.94185 0.97699 0.99133 0.91066 1.22393 0.96100 0.80155 1.02834 1.20996 0.98555 0.94846 0.97511 1.20947 1.00341 0.94740 0.97449 0.92514 0.92537 0.92577 0.91143 0.91189 0.86339 0.86355 0.88074 0.87734 0.91561 0.92183 0.92723 0.91577 0.90907 0.95697 0.92743 0.91596 0.95551 0.91090 0.89260 0.86136 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.09 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 5 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 6 C -0.06 -0.81 4.37 -104.62 -0.46 -1.26 16 7 C -0.10 -1.19 4.86 -29.04 -0.14 -1.33 16 8 C 0.53 7.99 7.84 -10.99 -0.09 7.90 16 9 O -0.54 -10.03 16.36 5.55 0.09 -9.94 16 10 N -0.62 -8.95 3.34 -170.01 -0.57 -9.51 16 11 C 0.11 1.60 6.20 -2.39 -0.01 1.58 16 12 C -0.08 -1.19 3.61 -88.76 -0.32 -1.51 16 13 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.13 -2.15 4.66 -28.07 -0.13 -2.28 16 15 C 0.13 2.54 4.15 -5.03 -0.02 2.52 16 16 N -0.60 -13.06 2.60 -175.43 -0.46 -13.51 16 17 C -0.26 -6.71 10.09 -15.06 -0.15 -6.86 16 18 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 20 N -0.91 -26.87 13.97 55.49 0.78 -26.09 16 21 Si 0.88 21.64 24.47 -169.99 -4.16 17.48 16 22 H -0.29 -6.92 6.66 56.52 0.38 -6.54 16 23 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.27 -6.47 6.70 56.52 0.38 -6.09 16 25 C 0.16 2.73 5.90 -5.03 -0.03 2.70 16 26 C -0.11 -1.55 2.85 -90.74 -0.26 -1.81 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 C 0.11 1.51 5.65 -2.85 -0.02 1.49 16 29 C -0.10 -1.24 9.70 -39.59 -0.38 -1.62 16 30 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.10 1.00 7.81 -51.93 -0.41 0.59 16 39 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 40 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 44 H 0.07 1.66 4.32 -51.93 -0.22 1.43 16 45 H 0.03 0.50 7.46 -51.93 -0.39 0.11 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 47 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.85 7.54 -51.93 -0.39 0.45 16 50 H 0.09 1.50 7.48 -51.93 -0.39 1.12 16 51 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 52 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -31.73 401.99 -10.78 -42.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.92 Total: 0.73 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.59 Total: -7.72 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.25 Total: -49.12 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.16 Total: 17.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.73 -10.78 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088122296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.160 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds