Wall clock time and date at job start Wed Apr 1 2020 02:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00532 * 2 1 4 4 C 1.38203 * 120.00101 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00390 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99572 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99636 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46934 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47316 * 60.00346 * 7 6 5 10 10 C 1.50704 * 109.47513 * 299.99985 * 7 6 5 11 11 O 1.21282 * 119.99618 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00281 * 179.97438 * 10 7 6 13 13 C 1.47186 * 125.65250 * 180.02562 * 12 10 7 14 14 C 1.55408 * 106.93308 * 178.80838 * 13 12 10 15 15 H 1.09003 * 112.45161 * 145.11714 * 14 13 12 16 16 C 1.53082 * 106.81452 * 268.55240 * 14 13 12 17 17 C 1.51496 * 111.61845 * 163.91543 * 16 14 13 18 18 N 1.47230 * 107.91066 * 302.67364 * 17 16 14 19 19 C 1.36938 * 121.39522 * 237.94938 * 18 17 16 20 20 H 1.07999 * 119.99587 * 26.76221 * 19 18 17 21 21 C 1.38815 * 120.00156 * 206.75672 * 19 18 17 22 22 N 1.31617 * 119.99913 * 17.11798 * 21 19 18 23 23 Si 1.86801 * 120.00061 * 197.11249 * 21 19 18 24 24 H 1.48499 * 109.47025 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46866 * 120.00027 * 23 21 19 26 26 H 1.48496 * 109.47242 * 240.00451 * 23 21 19 27 27 C 1.46710 * 117.21599 * 57.97648 * 18 17 16 28 28 C 1.50816 * 111.24592 * 307.84915 * 27 18 17 29 29 H 1.08998 * 109.22558 * 167.57120 * 28 27 18 30 30 C 1.47849 * 125.65054 * 359.97438 * 12 10 7 31 31 C 1.38222 * 119.99773 * 180.27610 * 2 1 3 32 32 H 1.08996 * 109.46929 * 89.99639 * 1 2 3 33 33 H 1.09000 * 109.47404 * 210.00181 * 1 2 3 34 34 H 1.09002 * 109.46781 * 329.99792 * 1 2 3 35 35 H 1.07999 * 119.99503 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.00020 * 179.97438 * 4 3 2 37 37 H 1.07997 * 120.00247 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.46876 * 59.99532 * 9 7 6 39 39 H 1.09002 * 109.47202 * 179.97438 * 9 7 6 40 40 H 1.09002 * 109.47272 * 299.99980 * 9 7 6 41 41 H 1.08992 * 109.96699 * 59.43833 * 13 12 10 42 42 H 1.09007 * 109.96437 * 298.17633 * 13 12 10 43 43 H 1.09003 * 109.18045 * 284.35410 * 16 14 13 44 44 H 1.08992 * 109.18445 * 43.60179 * 16 14 13 45 45 H 1.09001 * 110.01086 * 182.89009 * 17 16 14 46 46 H 1.08994 * 109.46264 * 62.14928 * 17 16 14 47 47 H 0.97001 * 120.00133 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.12837 * 187.38928 * 27 18 17 49 49 H 1.09002 * 109.11986 * 68.29865 * 27 18 17 50 50 H 1.09002 * 110.52518 * 38.05028 * 30 12 10 51 51 H 1.09004 * 110.52759 * 275.30750 * 30 12 10 52 52 H 1.08001 * 119.99516 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 4.3340 -2.5022 0.0000 8 1 3.6257 -3.3307 -0.0004 9 6 5.2141 -2.5836 1.2489 10 6 5.2000 -2.5819 -1.2309 11 8 5.2052 -1.6685 -2.0288 12 7 5.9694 -3.6676 -1.4444 13 6 6.8589 -3.8751 -2.5986 14 6 7.5557 -5.2488 -2.3918 15 1 7.7228 -5.7763 -3.3309 16 6 8.8626 -4.9743 -1.6435 17 6 9.4380 -6.2401 -1.0421 18 7 8.4208 -6.8203 -0.1497 19 6 8.6784 -7.0419 1.1768 20 1 9.4119 -6.4397 1.6923 21 6 7.9968 -8.0405 1.8589 22 7 7.3673 -8.9828 1.1896 23 14 7.9731 -8.0468 3.7268 24 1 8.7499 -6.8879 4.2356 25 1 6.5703 -7.9499 4.2043 26 1 8.5798 -9.3072 4.2253 27 6 7.1197 -7.1518 -0.7412 28 6 6.5426 -5.9747 -1.4868 29 1 5.6998 -6.3107 -2.0908 30 6 6.0607 -4.8470 -0.5575 31 6 2.1981 -1.1971 -0.0058 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6584 2.1326 0.0004 36 1 4.1205 2.1324 0.0001 37 1 5.3517 -0.0003 0.0005 38 1 4.5877 -2.5260 2.1391 39 1 5.7587 -3.5279 1.2486 40 1 5.9225 -1.7552 1.2489 41 1 7.6052 -3.0819 -2.6407 42 1 6.2764 -3.8881 -3.5198 43 1 9.5897 -4.5506 -2.3363 44 1 8.6735 -4.2596 -0.8427 45 1 10.3384 -6.0073 -0.4737 46 1 9.6760 -6.9450 -1.8387 47 1 6.8913 -9.6808 1.6662 48 1 6.4313 -7.4448 0.0514 49 1 7.2436 -7.9860 -1.4317 50 1 5.0831 -5.0877 -0.1399 51 1 6.7847 -4.6718 0.2383 52 1 1.6580 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088123596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:30 Heat of formation + Delta-G solvation = 6.276993 kcal Electronic energy + Delta-G solvation = -30906.841282 eV Core-core repulsion = 27064.148656 eV Total energy + Delta-G solvation = -3842.692627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.55956 -39.44657 -38.07483 -35.29401 -34.51123 -32.80076 -32.26293 -30.82936 -30.65983 -29.57789 -27.42153 -26.89038 -25.83796 -24.75011 -23.47105 -22.20367 -21.79304 -21.52959 -20.57634 -18.77283 -18.45725 -17.16890 -16.61594 -16.49281 -15.70003 -15.50555 -15.31471 -14.73308 -14.65743 -14.14134 -13.86900 -13.78757 -13.60949 -13.47436 -13.37333 -13.18788 -13.09395 -12.75543 -12.54397 -12.37196 -12.29522 -12.05799 -11.93742 -11.77601 -11.69947 -11.54124 -11.14846 -11.02910 -10.96066 -10.85758 -10.76837 -10.58567 -10.50193 -10.23142 -9.97006 -9.56298 -9.50572 -9.44484 -8.80580 -8.58968 -8.57196 -8.32400 -6.75370 -5.86299 -3.27531 1.32776 1.39711 2.81964 3.19102 3.31587 3.41036 3.42160 3.78082 4.42994 4.52070 4.57678 4.76615 4.84408 4.99918 5.04012 5.08905 5.10496 5.17167 5.21350 5.28689 5.33246 5.40882 5.42720 5.45764 5.56005 5.62431 5.66708 5.71735 5.77678 5.82662 5.84162 5.90709 6.00957 6.03223 6.07746 6.10915 6.21594 6.31534 6.36163 6.45607 6.47290 6.52115 6.53662 6.63036 6.63970 6.69339 6.78028 6.94454 6.99911 7.20022 7.53621 7.72982 7.76823 8.35469 8.36187 9.13609 9.76511 10.36082 11.22435 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003079 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.989457 B = 9092.332008 C =10257.463937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.088 4.088 6 C -0.057 4.057 7 C -0.068 4.068 8 H 0.102 0.898 9 C -0.150 4.150 10 C 0.532 3.468 11 O -0.545 6.545 12 N -0.613 5.613 13 C 0.112 3.888 14 C -0.085 4.085 15 H 0.088 0.912 16 C -0.126 4.126 17 C 0.141 3.859 18 N -0.589 5.589 19 C -0.247 4.247 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.177 3.823 28 C -0.113 4.113 29 H 0.063 0.937 30 C 0.109 3.891 31 C -0.113 4.113 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.092 0.908 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 14.222 -3.323 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.106 4.106 6 C -0.057 4.057 7 C -0.089 4.089 8 H 0.120 0.880 9 C -0.207 4.207 10 C 0.320 3.680 11 O -0.423 6.423 12 N -0.347 5.347 13 C -0.011 4.011 14 C -0.104 4.104 15 H 0.106 0.894 16 C -0.165 4.165 17 C 0.015 3.985 18 N -0.312 5.312 19 C -0.377 4.377 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.051 3.949 28 C -0.134 4.134 29 H 0.082 0.918 30 C -0.012 4.012 31 C -0.131 4.131 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.041 0.959 50 H 0.087 0.913 51 H 0.106 0.894 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.070 14.633 -3.636 17.596 hybrid contribution -0.053 -0.172 0.844 0.863 sum -9.124 14.461 -2.793 17.325 Atomic orbital electron populations 1.20762 0.91353 1.02560 1.02181 1.19817 0.95865 0.93094 1.00511 1.20963 0.94248 0.97274 1.01675 1.21069 0.94241 0.97863 1.00577 1.20891 0.99829 0.91757 0.98123 1.19323 0.93176 0.93715 0.99480 1.20233 0.97325 0.96757 0.94560 0.88027 1.21963 0.99509 1.03879 0.95382 1.20081 0.79839 0.80928 0.87172 1.90686 1.66727 1.37455 1.47398 1.48687 1.42889 1.18526 1.24571 1.22289 0.92516 0.97850 0.88424 1.22132 0.95654 0.93651 0.98975 0.89411 1.21783 0.95482 1.00305 0.98966 1.20670 0.92375 0.92231 0.93216 1.44022 1.07917 1.73337 1.05886 1.19175 1.22199 1.11891 0.84428 0.91552 1.25009 1.01521 0.95043 0.97991 1.70026 1.37661 1.12999 1.33971 0.86286 0.77483 0.77514 0.85913 1.20241 1.21510 1.21744 1.20067 0.88395 0.90055 0.96407 1.22204 0.97468 0.97028 0.96680 0.91820 1.22456 1.01199 0.83764 0.93823 1.20878 0.93228 0.97645 1.01366 0.91356 0.91624 0.91734 0.86447 0.86264 0.86420 0.91329 0.90184 0.92074 0.91805 0.92365 0.93198 0.92226 0.92598 0.96225 0.93643 0.89013 0.95864 0.91297 0.89418 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.36 9.70 -39.59 -0.38 -1.74 16 4 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 5 C -0.09 -1.19 7.93 -39.58 -0.31 -1.50 16 6 C -0.06 -0.76 4.40 -104.63 -0.46 -1.22 16 7 C -0.07 -0.90 2.27 -92.92 -0.21 -1.11 16 8 H 0.10 1.23 7.60 -51.93 -0.39 0.84 16 9 C -0.15 -1.87 8.82 37.16 0.33 -1.55 16 10 C 0.53 8.53 7.09 -10.99 -0.08 8.45 16 11 O -0.54 -10.29 15.44 5.56 0.09 -10.21 16 12 N -0.61 -9.56 3.33 -170.01 -0.57 -10.13 16 13 C 0.11 1.68 6.20 -2.39 -0.01 1.67 16 14 C -0.09 -1.30 3.59 -88.77 -0.32 -1.62 16 15 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 16 C -0.13 -2.03 4.74 -27.45 -0.13 -2.16 16 17 C 0.14 2.72 6.48 -4.40 -0.03 2.69 16 18 N -0.59 -13.38 2.91 -174.69 -0.51 -13.89 16 19 C -0.25 -6.27 9.67 -15.06 -0.15 -6.42 16 20 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 21 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 22 N -0.90 -24.55 11.17 55.49 0.62 -23.93 16 23 Si 0.90 20.50 29.59 -169.99 -5.03 15.47 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.18 3.78 4.73 -5.02 -0.02 3.76 16 28 C -0.11 -1.91 2.81 -90.73 -0.26 -2.16 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 C 0.11 1.74 4.11 -2.85 -0.01 1.73 16 31 C -0.11 -1.38 9.33 -39.58 -0.37 -1.75 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.61 7.52 -52.49 -0.39 1.22 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.07 4.99 -51.93 -0.26 0.81 16 40 H 0.06 0.76 7.39 -51.93 -0.38 0.38 16 41 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 42 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.03 7.14 -51.93 -0.37 0.66 16 45 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 48 H 0.09 2.20 6.03 -51.93 -0.31 1.89 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.07 1.02 7.46 -51.93 -0.39 0.63 16 51 H 0.09 1.56 6.45 -51.93 -0.33 1.22 16 52 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -29.36 398.39 -11.24 -40.60 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.69 Total: 3.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.15 Total: -6.96 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.45 Total: -47.94 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.36 -11.24 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.879 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds