Wall clock time and date at job start Wed Apr 1 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00532 * 2 1 4 4 C 1.38203 * 120.00101 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00390 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99572 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99636 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46934 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47316 * 60.00346 * 7 6 5 10 10 C 1.50704 * 109.47513 * 299.99985 * 7 6 5 11 11 O 1.21282 * 119.99618 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00281 * 179.97438 * 10 7 6 13 13 C 1.47186 * 125.65250 * 180.02562 * 12 10 7 14 14 C 1.55408 * 106.93308 * 178.80838 * 13 12 10 15 15 H 1.09003 * 112.45161 * 145.11714 * 14 13 12 16 16 C 1.53082 * 106.81452 * 268.55240 * 14 13 12 17 17 C 1.51496 * 111.61845 * 163.91543 * 16 14 13 18 18 N 1.47230 * 107.91066 * 302.67364 * 17 16 14 19 19 C 1.36938 * 121.39522 * 237.94938 * 18 17 16 20 20 H 1.07999 * 119.99587 * 26.76221 * 19 18 17 21 21 C 1.38815 * 120.00156 * 206.75672 * 19 18 17 22 22 N 1.31617 * 119.99913 * 17.11798 * 21 19 18 23 23 Si 1.86801 * 120.00061 * 197.11249 * 21 19 18 24 24 H 1.48499 * 109.47025 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46866 * 120.00027 * 23 21 19 26 26 H 1.48496 * 109.47242 * 240.00451 * 23 21 19 27 27 C 1.46710 * 117.21599 * 57.97648 * 18 17 16 28 28 C 1.50816 * 111.24592 * 307.84915 * 27 18 17 29 29 H 1.08998 * 109.22558 * 167.57120 * 28 27 18 30 30 C 1.47849 * 125.65054 * 359.97438 * 12 10 7 31 31 C 1.38222 * 119.99773 * 180.27610 * 2 1 3 32 32 H 1.08996 * 109.46929 * 89.99639 * 1 2 3 33 33 H 1.09000 * 109.47404 * 210.00181 * 1 2 3 34 34 H 1.09002 * 109.46781 * 329.99792 * 1 2 3 35 35 H 1.07999 * 119.99503 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.00020 * 179.97438 * 4 3 2 37 37 H 1.07997 * 120.00247 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.46876 * 59.99532 * 9 7 6 39 39 H 1.09002 * 109.47202 * 179.97438 * 9 7 6 40 40 H 1.09002 * 109.47272 * 299.99980 * 9 7 6 41 41 H 1.08992 * 109.96699 * 59.43833 * 13 12 10 42 42 H 1.09007 * 109.96437 * 298.17633 * 13 12 10 43 43 H 1.09003 * 109.18045 * 284.35410 * 16 14 13 44 44 H 1.08992 * 109.18445 * 43.60179 * 16 14 13 45 45 H 1.09001 * 110.01086 * 182.89009 * 17 16 14 46 46 H 1.08994 * 109.46264 * 62.14928 * 17 16 14 47 47 H 0.97001 * 120.00133 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.12837 * 187.38928 * 27 18 17 49 49 H 1.09002 * 109.11986 * 68.29865 * 27 18 17 50 50 H 1.09002 * 110.52518 * 38.05028 * 30 12 10 51 51 H 1.09004 * 110.52759 * 275.30750 * 30 12 10 52 52 H 1.08001 * 119.99516 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 4.3340 -2.5022 0.0000 8 1 3.6257 -3.3307 -0.0004 9 6 5.2141 -2.5836 1.2489 10 6 5.2000 -2.5819 -1.2309 11 8 5.2052 -1.6685 -2.0288 12 7 5.9694 -3.6676 -1.4444 13 6 6.8589 -3.8751 -2.5986 14 6 7.5557 -5.2488 -2.3918 15 1 7.7228 -5.7763 -3.3309 16 6 8.8626 -4.9743 -1.6435 17 6 9.4380 -6.2401 -1.0421 18 7 8.4208 -6.8203 -0.1497 19 6 8.6784 -7.0419 1.1768 20 1 9.4119 -6.4397 1.6923 21 6 7.9968 -8.0405 1.8589 22 7 7.3673 -8.9828 1.1896 23 14 7.9731 -8.0468 3.7268 24 1 8.7499 -6.8879 4.2356 25 1 6.5703 -7.9499 4.2043 26 1 8.5798 -9.3072 4.2253 27 6 7.1197 -7.1518 -0.7412 28 6 6.5426 -5.9747 -1.4868 29 1 5.6998 -6.3107 -2.0908 30 6 6.0607 -4.8470 -0.5575 31 6 2.1981 -1.1971 -0.0058 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6584 2.1326 0.0004 36 1 4.1205 2.1324 0.0001 37 1 5.3517 -0.0003 0.0005 38 1 4.5877 -2.5260 2.1391 39 1 5.7587 -3.5279 1.2486 40 1 5.9225 -1.7552 1.2489 41 1 7.6052 -3.0819 -2.6407 42 1 6.2764 -3.8881 -3.5198 43 1 9.5897 -4.5506 -2.3363 44 1 8.6735 -4.2596 -0.8427 45 1 10.3384 -6.0073 -0.4737 46 1 9.6760 -6.9450 -1.8387 47 1 6.8913 -9.6808 1.6662 48 1 6.4313 -7.4448 0.0514 49 1 7.2436 -7.9860 -1.4317 50 1 5.0831 -5.0877 -0.1399 51 1 6.7847 -4.6718 0.2383 52 1 1.6580 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088123596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:29 Heat of formation + Delta-G solvation = -6.938241 kcal Electronic energy + Delta-G solvation = -30907.414338 eV Core-core repulsion = 27064.148656 eV Total energy + Delta-G solvation = -3843.265682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.78607 -40.53628 -39.33327 -36.88258 -35.56359 -34.35123 -33.19689 -32.31033 -32.19008 -30.63598 -28.84535 -27.66736 -27.39593 -26.07486 -24.83458 -23.26414 -23.17916 -22.87294 -21.67043 -20.11949 -19.82003 -18.69924 -17.95900 -17.45103 -17.17021 -16.72688 -16.51343 -16.20953 -15.75482 -15.49083 -15.25202 -15.17996 -14.78220 -14.71046 -14.46168 -14.42389 -14.08154 -13.97112 -13.86410 -13.63197 -13.46429 -13.22914 -13.04036 -12.91176 -12.81668 -12.72108 -12.67753 -12.53779 -12.48921 -12.20730 -11.99760 -11.92329 -11.86368 -11.74542 -11.63356 -11.01492 -11.01077 -10.79559 -10.50364 -9.72840 -9.64127 -9.45840 -8.62424 -7.82613 -5.25269 0.41780 0.50276 1.48684 1.53039 1.56565 1.61228 1.98097 2.55101 2.85225 3.30161 3.41741 3.55279 3.66626 3.71273 3.77410 3.89014 3.98150 4.04870 4.14722 4.19874 4.26517 4.27767 4.40169 4.52763 4.53335 4.56537 4.62940 4.65738 4.70951 4.72187 4.82333 4.85163 4.85376 4.88531 4.99027 5.00251 5.09272 5.13464 5.15544 5.17384 5.20720 5.23938 5.31714 5.33814 5.41000 5.56972 5.60207 5.67802 5.69569 5.70714 5.79466 6.13273 6.43289 6.49331 7.10144 7.20602 7.90756 8.45498 9.24043 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003079 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.989457 B = 9092.332008 C =10257.463937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.110 4.110 6 C -0.073 4.073 7 C -0.062 4.062 8 H 0.115 0.885 9 C -0.143 4.143 10 C 0.530 3.470 11 O -0.574 6.574 12 N -0.612 5.612 13 C 0.115 3.885 14 C -0.077 4.077 15 H 0.106 0.894 16 C -0.115 4.115 17 C 0.138 3.862 18 N -0.604 5.604 19 C -0.250 4.250 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.932 5.932 23 Si 0.955 3.045 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.298 1.298 27 C 0.190 3.810 28 C -0.109 4.109 29 H 0.077 0.923 30 C 0.121 3.879 31 C -0.126 4.126 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.021 0.979 47 H 0.249 0.751 48 H 0.062 0.938 49 H 0.000 1.000 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 15.822 -3.546 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.128 4.128 6 C -0.073 4.073 7 C -0.083 4.083 8 H 0.133 0.867 9 C -0.201 4.201 10 C 0.320 3.680 11 O -0.454 6.454 12 N -0.345 5.345 13 C -0.008 4.008 14 C -0.096 4.096 15 H 0.124 0.876 16 C -0.154 4.154 17 C 0.013 3.987 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.081 0.919 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.225 1.225 27 C 0.064 3.936 28 C -0.130 4.130 29 H 0.095 0.905 30 C -0.001 4.001 31 C -0.144 4.144 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.018 0.982 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.242 16.250 -3.870 19.595 hybrid contribution 0.362 -0.640 0.875 1.143 sum -9.880 15.610 -2.995 18.715 Atomic orbital electron populations 1.20814 0.89176 1.03752 1.02934 1.20225 0.97551 0.92738 0.99211 1.21319 0.94018 0.98463 1.00713 1.21343 0.95026 0.98003 1.00150 1.20942 0.99442 0.92749 0.99697 1.19408 0.93878 0.93478 1.00530 1.20235 0.97158 0.97571 0.93374 0.86718 1.21900 0.99444 1.02992 0.95726 1.20542 0.79664 0.80286 0.87528 1.90666 1.67749 1.38387 1.48638 1.48703 1.42865 1.18315 1.24572 1.22283 0.92543 0.97400 0.88551 1.22128 0.94634 0.93690 0.99157 0.87568 1.21638 0.96471 0.98175 0.99083 1.20799 0.91804 0.93379 0.92713 1.44244 1.09315 1.73464 1.05764 1.19400 1.21522 1.11218 0.85841 0.91858 1.25611 1.01920 0.95040 1.01379 1.70159 1.38858 1.13690 1.35099 0.85386 0.77265 0.77135 0.81759 1.19396 1.21460 1.22517 1.19799 0.87528 0.91176 0.95106 1.22000 0.98277 0.95846 0.96891 0.90451 1.22247 1.01267 0.83486 0.93092 1.21133 0.92884 0.98887 1.01521 0.90684 0.90854 0.90213 0.83894 0.84598 0.87699 0.89913 0.91217 0.92585 0.91707 0.91559 0.90388 0.93467 0.92890 0.96121 0.94169 0.91955 0.98242 0.90172 0.91252 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.78 16 2 C -0.10 -1.96 5.88 -19.86 -0.12 -2.08 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 5 C -0.11 -2.95 7.93 22.27 0.18 -2.78 16 6 C -0.07 -1.90 4.40 -19.87 -0.09 -1.99 16 7 C -0.06 -1.62 2.27 -12.29 -0.03 -1.65 16 8 H 0.11 2.63 7.60 -2.39 -0.02 2.61 16 9 C -0.14 -3.52 8.82 71.98 0.64 -2.89 16 10 C 0.53 16.67 7.09 87.66 0.62 17.29 16 11 O -0.57 -21.49 15.44 -3.03 -0.05 -21.54 16 12 N -0.61 -18.43 3.33 -810.17 -2.70 -21.13 16 13 C 0.11 3.24 6.20 87.08 0.54 3.78 16 14 C -0.08 -2.22 3.59 -9.59 -0.03 -2.25 16 15 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 16 C -0.11 -3.52 4.74 30.13 0.14 -3.37 16 17 C 0.14 5.25 6.48 85.75 0.56 5.80 16 18 N -0.60 -27.69 2.91 -706.58 -2.05 -29.74 16 19 C -0.25 -12.78 9.67 84.03 0.81 -11.96 16 20 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 21 C -0.04 -2.30 4.94 84.86 0.42 -1.88 16 22 N -0.93 -51.84 11.17 21.65 0.24 -51.60 16 23 Si 0.96 42.60 29.59 68.60 2.03 44.63 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.19 8.22 4.73 85.63 0.41 8.63 16 28 C -0.11 -3.61 2.81 -10.87 -0.03 -3.64 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 C 0.12 3.78 4.11 86.41 0.36 4.14 16 31 C -0.13 -2.90 9.33 22.27 0.21 -2.69 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 34 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.10 2.97 7.52 -2.91 -0.02 2.94 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.85 4.99 -2.39 -0.01 1.84 16 40 H 0.06 1.41 7.39 -2.39 -0.02 1.39 16 41 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.58 7.14 -2.39 -0.02 1.56 16 45 H 0.05 2.01 7.97 -2.39 -0.02 1.99 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 48 H 0.06 3.07 6.03 -2.39 -0.01 3.05 16 49 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.08 2.31 7.46 -2.39 -0.02 2.30 16 51 H 0.07 2.47 6.45 -2.38 -0.02 2.45 16 52 H 0.13 2.56 7.95 -2.91 -0.02 2.54 16 Total: -1.00 -63.65 398.39 4.09 -59.56 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.89 Total: 23.12 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.73 Total: -3.30 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.51 Total: -102.47 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.65 4.09 -59.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.626 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds