Wall clock time and date at job start Wed Apr 1 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99583 * 2 1 4 4 C 1.38214 * 119.99939 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99688 * 359.76228 * 4 3 2 6 6 C 1.38212 * 120.00180 * 0.47033 * 5 4 3 7 7 C 1.50701 * 120.00257 * 179.78742 * 6 5 4 8 8 H 1.09007 * 109.47198 * 179.72402 * 7 6 5 9 9 C 1.53002 * 109.47105 * 299.72182 * 7 6 5 10 10 C 1.50693 * 109.47192 * 59.72119 * 7 6 5 11 11 O 1.21281 * 120.00582 * 265.32978 * 10 7 6 12 12 N 1.34779 * 119.99994 * 85.33001 * 10 7 6 13 13 C 1.47187 * 125.65137 * 184.97543 * 12 10 7 14 14 C 1.55407 * 106.93244 * 178.87125 * 13 12 10 15 15 H 1.09002 * 112.45227 * 145.11777 * 14 13 12 16 16 C 1.53089 * 106.81712 * 268.55199 * 14 13 12 17 17 C 1.51497 * 111.61979 * 163.90898 * 16 14 13 18 18 N 1.47234 * 107.91661 * 302.68390 * 17 16 14 19 19 C 1.36931 * 121.39176 * 237.95093 * 18 17 16 20 20 H 1.08000 * 120.00466 * 30.87241 * 19 18 17 21 21 C 1.38817 * 119.99759 * 210.87824 * 19 18 17 22 22 N 1.31614 * 120.00027 * 9.96503 * 21 19 18 23 23 Si 1.86802 * 119.99878 * 189.96639 * 21 19 18 24 24 H 1.48500 * 109.47054 * 59.99810 * 23 21 19 25 25 H 1.48492 * 109.47175 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47143 * 300.00083 * 23 21 19 27 27 C 1.46704 * 117.21542 * 57.96786 * 18 17 16 28 28 C 1.50817 * 111.24715 * 307.85574 * 27 18 17 29 29 H 1.09005 * 109.22683 * 167.57926 * 28 27 18 30 30 C 1.47854 * 125.65009 * 5.01701 * 12 10 7 31 31 C 1.38203 * 120.00131 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47289 * 270.02343 * 1 2 3 33 33 H 1.09004 * 109.47224 * 30.02628 * 1 2 3 34 34 H 1.08999 * 109.46934 * 150.02445 * 1 2 3 35 35 H 1.07999 * 120.00531 * 359.97230 * 3 2 1 36 36 H 1.07994 * 120.00211 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00047 * 180.24915 * 5 4 3 38 38 H 1.09002 * 109.47085 * 64.87702 * 9 7 6 39 39 H 1.09000 * 109.47537 * 184.88292 * 9 7 6 40 40 H 1.09000 * 109.46845 * 304.88235 * 9 7 6 41 41 H 1.09005 * 109.96681 * 59.50725 * 13 12 10 42 42 H 1.08993 * 109.97377 * 298.24318 * 13 12 10 43 43 H 1.08995 * 109.18580 * 284.35226 * 16 14 13 44 44 H 1.08997 * 109.18294 * 43.60356 * 16 14 13 45 45 H 1.08999 * 110.01210 * 182.88686 * 17 16 14 46 46 H 1.09000 * 109.45476 * 62.15571 * 17 16 14 47 47 H 0.97005 * 120.00046 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.12711 * 187.39877 * 27 18 17 49 49 H 1.09001 * 109.12249 * 68.30420 * 27 18 17 50 50 H 1.08996 * 110.52335 * 37.98504 * 30 12 10 51 51 H 1.09004 * 110.52330 * 275.23964 * 30 12 10 52 52 H 1.07996 * 120.00326 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 0.0039 6 6 3.5807 -1.1968 -0.0010 7 6 4.3342 -2.5019 -0.0010 8 1 3.6259 -3.3305 -0.0002 9 6 5.2130 -2.5834 -1.2508 10 6 5.2015 -2.5812 1.2288 11 8 6.3632 -2.2370 1.1750 12 7 4.6861 -3.0347 2.3887 13 6 5.3855 -3.0676 3.6834 14 6 4.3845 -3.6425 4.7240 15 1 4.8758 -4.2556 5.4796 16 6 3.6496 -2.4483 5.3383 17 6 2.3939 -2.8806 6.0674 18 7 1.5393 -3.6014 5.1094 19 6 0.2627 -3.1860 4.8394 20 1 0.0137 -2.1365 4.8927 21 6 -0.7114 -4.1140 4.4974 22 7 -0.4665 -5.4012 4.6215 23 14 -2.3697 -3.5358 3.8609 24 1 -2.1750 -2.7456 2.6188 25 1 -3.2258 -4.7134 3.5688 26 1 -3.0264 -2.6886 4.8887 27 6 2.1124 -4.7835 4.4564 28 6 3.4447 -4.4668 3.8244 29 1 3.9403 -5.3970 3.5463 30 6 3.3249 -3.5823 2.5712 31 6 2.1981 -1.1969 0.0005 32 1 -0.3634 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5143 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0005 36 1 4.1203 2.1328 -0.0010 37 1 5.3517 0.0002 0.0075 38 1 5.9770 -1.8071 -1.2090 39 1 5.6912 -3.5619 -1.2956 40 1 4.5967 -2.4392 -2.1382 41 1 5.6835 -2.0594 3.9712 42 1 6.2630 -3.7106 3.6163 43 1 4.3111 -1.9445 6.0429 44 1 3.3735 -1.7519 4.5466 45 1 1.8654 -2.0074 6.4498 46 1 2.6622 -3.5405 6.8924 47 1 -1.1471 -6.0497 4.3822 48 1 1.4259 -5.1339 3.6857 49 1 2.2473 -5.5709 5.1979 50 1 3.0347 -4.1805 1.7075 51 1 2.6086 -2.7779 2.7382 52 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088123597.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:34 Heat of formation + Delta-G solvation = 1.415644 kcal Electronic energy + Delta-G solvation = -31795.136052 eV Core-core repulsion = 27952.232622 eV Total energy + Delta-G solvation = -3842.903431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.49574 -39.33259 -38.14921 -35.27095 -34.36208 -32.70189 -32.19216 -30.79427 -30.50135 -29.63790 -27.57143 -26.77439 -25.71871 -24.76864 -23.25981 -22.15018 -21.79937 -21.42515 -20.59569 -18.67897 -18.28878 -17.19416 -16.67323 -16.54838 -15.75460 -15.32989 -15.23843 -14.82333 -14.56484 -14.06124 -13.78305 -13.69000 -13.56546 -13.50643 -13.13269 -13.10565 -12.98616 -12.66296 -12.36610 -12.28675 -12.14069 -12.07097 -11.97014 -11.80398 -11.75484 -11.37473 -11.09476 -10.99496 -10.95277 -10.80606 -10.75610 -10.57030 -10.49965 -10.26164 -9.97052 -9.64265 -9.50792 -9.43272 -8.71644 -8.57319 -8.50146 -8.30303 -6.66417 -5.83917 -3.31046 1.35736 1.46154 2.82055 3.23158 3.32495 3.38919 3.39149 3.80213 4.43093 4.62187 4.66131 4.85167 4.93472 5.02352 5.06533 5.15300 5.15797 5.21273 5.28722 5.37277 5.42850 5.43802 5.51239 5.62640 5.66612 5.72279 5.77342 5.79710 5.83162 5.87700 5.91854 5.93691 6.07519 6.10277 6.14663 6.16651 6.23509 6.33962 6.40009 6.48909 6.52297 6.55413 6.62961 6.67314 6.68129 6.73302 6.81494 6.98387 7.06086 7.24056 7.58853 7.73343 7.79513 8.36426 8.40999 9.16952 9.77703 10.39520 11.24503 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.005077 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.962655 B = 5513.674367 C = 7432.066883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.069 4.069 7 C -0.068 4.068 8 H 0.097 0.903 9 C -0.129 4.129 10 C 0.537 3.463 11 O -0.552 6.552 12 N -0.611 5.611 13 C 0.111 3.889 14 C -0.085 4.085 15 H 0.087 0.913 16 C -0.126 4.126 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.905 5.905 23 Si 0.900 3.100 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.179 3.821 28 C -0.113 4.113 29 H 0.063 0.937 30 C 0.112 3.888 31 C -0.105 4.105 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.255 0.745 48 H 0.092 0.908 49 H 0.023 0.977 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 6.950 -8.835 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.089 4.089 8 H 0.116 0.884 9 C -0.187 4.187 10 C 0.325 3.675 11 O -0.431 6.431 12 N -0.344 5.344 13 C -0.011 4.011 14 C -0.104 4.104 15 H 0.106 0.894 16 C -0.166 4.166 17 C 0.016 3.984 18 N -0.310 5.310 19 C -0.377 4.377 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.550 5.550 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.053 3.947 28 C -0.134 4.134 29 H 0.081 0.919 30 C -0.010 4.010 31 C -0.123 4.123 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.041 0.959 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.732 7.020 -8.968 13.766 hybrid contribution -0.894 0.165 -0.203 0.932 sum 6.838 7.185 -9.171 13.508 Atomic orbital electron populations 1.20817 0.91027 1.02477 1.02984 1.19893 0.96174 0.92954 0.98966 1.21022 0.94201 0.97459 1.01305 1.21057 0.94240 0.97744 1.00488 1.21028 1.00123 0.91898 1.00161 1.19358 0.93291 0.93398 1.00926 1.20265 0.97637 0.96874 0.94159 0.88448 1.21650 0.99223 1.02916 0.94881 1.20041 0.87373 0.76690 0.83408 1.90642 1.17478 1.50151 1.84813 1.48710 1.16115 1.61507 1.08033 1.22295 0.95239 1.00669 0.82935 1.22127 0.95120 0.97140 0.95993 0.89427 1.21784 0.98206 0.96619 0.99942 1.20673 0.90507 0.95758 0.91495 1.43932 1.11350 1.30976 1.44780 1.19058 0.84897 0.91514 1.42192 0.91929 1.25130 0.97455 0.95372 1.01250 1.69940 1.34032 0.99784 1.51210 0.86408 0.84022 0.77519 0.79052 1.20872 1.21624 1.20897 1.20065 0.89247 0.88734 0.96672 1.22216 1.00053 0.96810 0.94317 0.91889 1.22356 0.82768 0.97758 0.98072 1.20982 0.93047 0.98081 1.00179 0.90589 0.91811 0.91448 0.86302 0.86254 0.85932 0.91238 0.92156 0.91831 0.91910 0.92292 0.93280 0.92270 0.92663 0.96244 0.93524 0.89013 0.95885 0.91539 0.89696 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.08 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 5 C -0.11 -1.57 8.86 -39.58 -0.35 -1.92 16 6 C -0.07 -0.96 4.77 -104.62 -0.50 -1.46 16 7 C -0.07 -0.93 2.46 -92.93 -0.23 -1.16 16 8 H 0.10 1.24 6.44 -51.92 -0.33 0.91 16 9 C -0.13 -1.54 8.57 37.16 0.32 -1.22 16 10 C 0.54 8.78 6.57 -10.99 -0.07 8.71 16 11 O -0.55 -10.34 16.32 5.56 0.09 -10.25 16 12 N -0.61 -9.94 3.34 -170.01 -0.57 -10.51 16 13 C 0.11 1.74 6.21 -2.39 -0.01 1.72 16 14 C -0.08 -1.34 3.59 -88.77 -0.32 -1.66 16 15 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.13 -2.12 4.74 -27.45 -0.13 -2.25 16 17 C 0.14 2.81 6.48 -4.40 -0.03 2.78 16 18 N -0.59 -13.57 2.90 -174.68 -0.51 -14.08 16 19 C -0.25 -6.32 9.67 -15.06 -0.15 -6.46 16 20 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 21 C 0.01 0.17 5.09 -17.43 -0.09 0.08 16 22 N -0.91 -24.70 11.04 55.49 0.61 -24.09 16 23 Si 0.90 20.53 29.57 -169.99 -5.03 15.51 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.18 3.89 4.67 -5.03 -0.02 3.87 16 28 C -0.11 -1.97 2.81 -90.74 -0.25 -2.23 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 C 0.11 1.88 5.60 -2.85 -0.02 1.86 16 31 C -0.10 -1.45 9.33 -39.59 -0.37 -1.82 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.70 7.64 -52.49 -0.40 1.30 16 38 H 0.07 0.88 7.13 -51.93 -0.37 0.51 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.09 7.15 -51.93 -0.37 0.72 16 45 H 0.05 1.09 7.97 -51.93 -0.41 0.68 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.09 2.23 6.11 -51.93 -0.32 1.91 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 1.03 6.97 -51.93 -0.36 0.67 16 51 H 0.08 1.63 7.55 -51.93 -0.39 1.24 16 52 H 0.12 1.65 7.95 -52.49 -0.42 1.23 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -28.91 403.91 -11.39 -40.30 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.82 Total: 4.61 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.26 Total: -7.57 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.46 Total: -48.68 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.91 -11.39 -40.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123597.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.713 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds