Wall clock time and date at job start Wed Apr 1 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99867 * 2 1 4 4 C 1.38230 * 119.99951 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00365 * 359.95519 * 4 3 2 6 6 C 1.50696 * 120.00283 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47242 * 359.97438 * 6 5 4 8 8 C 1.53003 * 109.46935 * 239.99840 * 6 5 4 9 9 C 1.50695 * 109.47335 * 120.00011 * 6 5 4 10 10 O 1.21285 * 120.00225 * 359.97438 * 9 6 5 11 11 N 1.34772 * 120.00273 * 179.97438 * 9 6 5 12 12 C 1.47196 * 125.65215 * 180.02562 * 11 9 6 13 13 C 1.55417 * 106.93067 * 178.80345 * 12 11 9 14 14 H 1.09001 * 112.44573 * 145.11774 * 13 12 11 15 15 C 1.53083 * 106.81059 * 268.55030 * 13 12 11 16 16 C 1.51502 * 111.61347 * 163.91346 * 15 13 12 17 17 N 1.47230 * 107.91279 * 302.67974 * 16 15 13 18 18 C 1.36942 * 121.39217 * 237.94655 * 17 16 15 19 19 H 1.08001 * 119.99803 * 26.76945 * 18 17 16 20 20 C 1.38815 * 120.00126 * 206.76112 * 18 17 16 21 21 N 1.31617 * 119.99913 * 17.10740 * 20 18 17 22 22 Si 1.86801 * 120.00061 * 197.10192 * 20 18 17 23 23 H 1.48503 * 109.46963 * 60.00210 * 22 20 18 24 24 H 1.48500 * 109.46730 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47085 * 300.00620 * 22 20 18 26 26 C 1.46698 * 117.21696 * 57.97466 * 17 16 15 27 27 C 1.50822 * 111.24822 * 307.84686 * 26 17 16 28 28 H 1.08994 * 109.22568 * 167.57411 * 27 26 17 29 29 C 1.47850 * 125.65046 * 359.97399 * 11 9 6 30 30 C 1.38235 * 119.99781 * 0.27417 * 5 4 3 31 31 C 1.38227 * 120.00217 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47057 * 90.00285 * 1 2 3 33 33 H 1.09000 * 109.46734 * 210.00091 * 1 2 3 34 34 H 1.09003 * 109.47086 * 329.99995 * 1 2 3 35 35 H 1.07998 * 120.00091 * 359.97438 * 3 2 1 36 36 H 1.08006 * 119.99622 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.47161 * 299.99545 * 8 6 5 38 38 H 1.09001 * 109.47353 * 60.00084 * 8 6 5 39 39 H 1.09003 * 109.46863 * 180.02562 * 8 6 5 40 40 H 1.08992 * 109.96683 * 59.43462 * 12 11 9 41 41 H 1.08995 * 109.96558 * 298.17095 * 12 11 9 42 42 H 1.08994 * 109.18772 * 284.35234 * 15 13 12 43 43 H 1.09001 * 109.18743 * 43.61022 * 15 13 12 44 44 H 1.09004 * 110.01211 * 182.88993 * 16 15 13 45 45 H 1.08996 * 109.46247 * 62.15020 * 16 15 13 46 46 H 0.97001 * 120.00133 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.12890 * 187.39338 * 26 17 16 48 48 H 1.08996 * 109.12694 * 68.30178 * 26 17 16 49 49 H 1.09005 * 110.52467 * 38.05482 * 29 11 9 50 50 H 1.09004 * 110.52336 * 275.31028 * 29 11 9 51 51 H 1.08001 * 120.00243 * 179.72804 * 30 5 4 52 52 H 1.08006 * 120.00245 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0002 -0.0001 7 1 6.1420 1.0278 -0.0009 8 6 6.2887 -0.7215 -1.2492 9 6 6.2811 -0.7098 1.2305 10 8 5.4930 -1.1701 2.0293 11 7 7.6061 -0.8333 1.4436 12 6 8.2311 -1.4997 2.5977 13 6 9.7691 -1.4164 2.3902 14 1 10.3098 -1.2973 3.3291 15 6 10.1843 -2.6857 1.6420 16 6 11.5680 -2.5511 1.0399 17 7 11.5616 -1.3802 0.1474 18 6 11.8818 -1.4927 -1.1793 19 1 11.7267 -2.4291 -1.6947 20 6 12.4057 -0.4033 -1.8617 21 7 12.9072 0.6131 -1.1927 22 14 12.3988 -0.3800 -3.7296 23 1 11.0004 -0.4722 -4.2207 24 1 13.0106 0.8846 -4.2110 25 1 13.1805 -1.5340 -4.2419 26 6 11.1985 -0.0878 0.7389 27 6 9.8908 -0.1762 1.4850 28 1 9.7607 0.7217 2.0890 29 6 8.6729 -0.3227 0.5563 30 6 3.5806 -1.1970 -0.0049 31 6 2.1982 -1.1971 0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6582 2.1325 -0.0004 36 1 4.1204 2.1326 -0.0010 37 1 5.9254 -1.7492 -1.2487 38 1 5.9254 -0.2080 -2.1393 39 1 7.3787 -0.7219 -1.2489 40 1 7.9172 -2.5426 2.6401 41 1 7.9515 -0.9887 3.5189 42 1 10.1812 -3.5271 2.3348 43 1 9.4705 -2.8793 0.8413 44 1 11.8163 -3.4475 0.4715 45 1 12.2979 -2.4047 1.8361 46 1 13.2736 1.3742 -1.6695 47 1 11.1077 0.6549 -0.0538 48 1 11.9831 0.2222 1.4290 49 1 8.3923 0.6443 0.1386 50 1 8.8827 -1.0374 -0.2395 51 1 4.1206 -2.1323 -0.0091 52 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088174649.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:38 Heat of formation + Delta-G solvation = 6.335583 kcal Electronic energy + Delta-G solvation = -30836.553924 eV Core-core repulsion = 26993.863838 eV Total energy + Delta-G solvation = -3842.690086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.55023 -39.44012 -38.07965 -35.29098 -34.66489 -32.78686 -31.45160 -30.93731 -30.80443 -30.24130 -27.51476 -26.70259 -25.76576 -24.48646 -23.14673 -22.70321 -21.73249 -21.47531 -20.67570 -18.94773 -18.47826 -17.15842 -16.57842 -16.24748 -15.68994 -15.47584 -15.25889 -14.76425 -14.64462 -14.16766 -13.86938 -13.80762 -13.60954 -13.47021 -13.37503 -13.35663 -13.10938 -12.75738 -12.52816 -12.39590 -12.26897 -12.05233 -11.91294 -11.76236 -11.68785 -11.50775 -11.14726 -11.02770 -10.91142 -10.89136 -10.75010 -10.58196 -10.49616 -10.27715 -9.96487 -9.55805 -9.49997 -9.44404 -8.88200 -8.57986 -8.51464 -8.31786 -6.75067 -5.85875 -3.27193 1.29529 1.43350 2.82529 3.19451 3.33390 3.40150 3.40755 3.77955 4.43324 4.54384 4.60861 4.76305 4.84476 4.98081 5.00663 5.01746 5.10222 5.19994 5.21889 5.31234 5.33472 5.40636 5.41291 5.45370 5.62566 5.62724 5.64358 5.71145 5.78270 5.82990 5.84834 5.91249 6.03221 6.03933 6.06545 6.10402 6.21819 6.31478 6.35665 6.41487 6.46513 6.53386 6.55832 6.63605 6.64386 6.69651 6.78275 6.94680 7.00030 7.20287 7.53796 7.72565 7.77355 8.35966 8.36757 9.13955 9.76841 10.36484 11.22878 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.002972 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.612013 B = 9418.614552 C =10614.833583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.065 4.065 6 C -0.067 4.067 7 H 0.102 0.898 8 C -0.150 4.150 9 C 0.532 3.468 10 O -0.545 6.545 11 N -0.613 5.613 12 C 0.112 3.888 13 C -0.085 4.085 14 H 0.088 0.912 15 C -0.126 4.126 16 C 0.141 3.859 17 N -0.589 5.589 18 C -0.249 4.249 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.899 3.101 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.177 3.823 27 C -0.113 4.113 28 H 0.063 0.937 29 C 0.109 3.891 30 C -0.079 4.079 31 C -0.123 4.123 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.255 0.745 47 H 0.092 0.908 48 H 0.023 0.977 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 -0.089 3.268 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.066 4.066 6 C -0.088 4.088 7 H 0.120 0.880 8 C -0.207 4.207 9 C 0.320 3.680 10 O -0.423 6.423 11 N -0.347 5.347 12 C -0.011 4.011 13 C -0.104 4.104 14 H 0.106 0.894 15 C -0.165 4.165 16 C 0.015 3.985 17 N -0.311 5.311 18 C -0.378 4.378 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.051 3.949 27 C -0.134 4.134 28 H 0.082 0.918 29 C -0.012 4.012 30 C -0.097 4.097 31 C -0.141 4.141 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.041 0.959 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.629 -0.183 3.585 17.990 hybrid contribution 0.152 0.169 -0.863 0.893 sum -17.477 -0.015 2.721 17.687 Atomic orbital electron populations 1.20767 0.91481 1.02574 1.02064 1.19879 0.95855 0.93300 1.00169 1.20910 0.93965 0.97367 1.02021 1.20987 0.94243 0.97235 1.00257 1.19327 0.93402 0.93565 1.00289 1.20223 0.92602 1.01488 0.94503 0.88027 1.21966 1.02949 1.00421 0.95406 1.20094 0.80688 0.80057 0.87191 1.90685 1.54592 1.49668 1.47352 1.48694 1.04955 1.56477 1.24560 1.22290 0.93295 0.97059 0.88433 1.22132 0.92754 0.96556 0.98970 0.89414 1.21785 1.00484 0.95308 0.98965 1.20671 0.92865 0.91740 0.93213 1.44004 1.78498 1.02786 1.05847 1.19091 1.35859 0.98439 0.84450 0.91646 1.25007 0.98041 0.98472 0.97989 1.70006 1.41441 1.09065 1.34185 0.86416 0.77869 0.76978 0.85812 1.20953 1.21643 1.20925 1.20066 0.88773 0.89677 0.96399 1.22206 0.97762 0.96742 0.96686 0.91818 1.22455 0.85847 0.99119 0.93809 1.20889 0.93854 0.97634 0.97315 1.20965 0.94085 0.97388 1.01671 0.91378 0.91708 0.91738 0.86291 0.86171 0.92113 0.91337 0.90201 0.91816 0.92366 0.93199 0.92228 0.92604 0.96228 0.93526 0.89017 0.95865 0.91293 0.89429 0.86384 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.11 -1.32 9.67 -39.59 -0.38 -1.70 16 5 C -0.07 -0.88 4.39 -104.63 -0.46 -1.34 16 6 C -0.07 -0.89 2.27 -92.93 -0.21 -1.11 16 7 H 0.10 1.23 7.60 -51.93 -0.39 0.83 16 8 C -0.15 -1.89 8.82 37.16 0.33 -1.56 16 9 C 0.53 8.54 7.09 -10.99 -0.08 8.46 16 10 O -0.55 -10.31 15.46 5.55 0.09 -10.23 16 11 N -0.61 -9.59 3.33 -170.00 -0.57 -10.15 16 12 C 0.11 1.69 6.20 -2.38 -0.01 1.67 16 13 C -0.09 -1.31 3.59 -88.76 -0.32 -1.62 16 14 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.13 -2.04 4.74 -27.45 -0.13 -2.17 16 16 C 0.14 2.73 6.48 -4.40 -0.03 2.70 16 17 N -0.59 -13.40 2.91 -174.69 -0.51 -13.90 16 18 C -0.25 -6.31 9.68 -15.06 -0.15 -6.46 16 19 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 20 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 21 N -0.90 -24.59 11.17 55.49 0.62 -23.97 16 22 Si 0.90 20.53 29.59 -169.99 -5.03 15.50 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.18 3.79 4.73 -5.03 -0.02 3.76 16 27 C -0.11 -1.92 2.81 -90.73 -0.26 -2.17 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 C 0.11 1.75 4.11 -2.85 -0.01 1.74 16 30 C -0.08 -1.07 7.94 -39.58 -0.31 -1.38 16 31 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.23 7.95 -52.48 -0.42 0.81 16 37 H 0.06 0.76 7.37 -51.93 -0.38 0.38 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.08 4.99 -51.93 -0.26 0.82 16 40 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.03 7.14 -51.93 -0.37 0.66 16 44 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 47 H 0.09 2.20 6.03 -51.93 -0.31 1.89 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 1.02 7.46 -51.93 -0.39 0.64 16 50 H 0.09 1.57 6.45 -51.93 -0.33 1.23 16 51 H 0.12 1.62 7.52 -52.49 -0.39 1.23 16 52 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -29.35 398.40 -11.24 -40.58 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.69 Total: 3.11 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.15 Total: -6.94 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.45 Total: -48.03 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.35 -11.24 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088174649.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.919 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds