Wall clock time and date at job start Wed Apr 1 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99867 * 2 1 4 4 C 1.38230 * 119.99951 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00365 * 359.95519 * 4 3 2 6 6 C 1.50696 * 120.00283 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47242 * 359.97438 * 6 5 4 8 8 C 1.53003 * 109.46935 * 239.99840 * 6 5 4 9 9 C 1.50695 * 109.47335 * 120.00011 * 6 5 4 10 10 O 1.21285 * 120.00225 * 359.97438 * 9 6 5 11 11 N 1.34772 * 120.00273 * 179.97438 * 9 6 5 12 12 C 1.47196 * 125.65215 * 180.02562 * 11 9 6 13 13 C 1.55417 * 106.93067 * 178.80345 * 12 11 9 14 14 H 1.09001 * 112.44573 * 145.11774 * 13 12 11 15 15 C 1.53083 * 106.81059 * 268.55030 * 13 12 11 16 16 C 1.51502 * 111.61347 * 163.91346 * 15 13 12 17 17 N 1.47230 * 107.91279 * 302.67974 * 16 15 13 18 18 C 1.36942 * 121.39217 * 237.94655 * 17 16 15 19 19 H 1.08001 * 119.99803 * 26.76945 * 18 17 16 20 20 C 1.38815 * 120.00126 * 206.76112 * 18 17 16 21 21 N 1.31617 * 119.99913 * 17.10740 * 20 18 17 22 22 Si 1.86801 * 120.00061 * 197.10192 * 20 18 17 23 23 H 1.48503 * 109.46963 * 60.00210 * 22 20 18 24 24 H 1.48500 * 109.46730 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47085 * 300.00620 * 22 20 18 26 26 C 1.46698 * 117.21696 * 57.97466 * 17 16 15 27 27 C 1.50822 * 111.24822 * 307.84686 * 26 17 16 28 28 H 1.08994 * 109.22568 * 167.57411 * 27 26 17 29 29 C 1.47850 * 125.65046 * 359.97399 * 11 9 6 30 30 C 1.38235 * 119.99781 * 0.27417 * 5 4 3 31 31 C 1.38227 * 120.00217 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47057 * 90.00285 * 1 2 3 33 33 H 1.09000 * 109.46734 * 210.00091 * 1 2 3 34 34 H 1.09003 * 109.47086 * 329.99995 * 1 2 3 35 35 H 1.07998 * 120.00091 * 359.97438 * 3 2 1 36 36 H 1.08006 * 119.99622 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.47161 * 299.99545 * 8 6 5 38 38 H 1.09001 * 109.47353 * 60.00084 * 8 6 5 39 39 H 1.09003 * 109.46863 * 180.02562 * 8 6 5 40 40 H 1.08992 * 109.96683 * 59.43462 * 12 11 9 41 41 H 1.08995 * 109.96558 * 298.17095 * 12 11 9 42 42 H 1.08994 * 109.18772 * 284.35234 * 15 13 12 43 43 H 1.09001 * 109.18743 * 43.61022 * 15 13 12 44 44 H 1.09004 * 110.01211 * 182.88993 * 16 15 13 45 45 H 1.08996 * 109.46247 * 62.15020 * 16 15 13 46 46 H 0.97001 * 120.00133 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.12890 * 187.39338 * 26 17 16 48 48 H 1.08996 * 109.12694 * 68.30178 * 26 17 16 49 49 H 1.09005 * 110.52467 * 38.05482 * 29 11 9 50 50 H 1.09004 * 110.52336 * 275.31028 * 29 11 9 51 51 H 1.08001 * 120.00243 * 179.72804 * 30 5 4 52 52 H 1.08006 * 120.00245 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0002 -0.0001 7 1 6.1420 1.0278 -0.0009 8 6 6.2887 -0.7215 -1.2492 9 6 6.2811 -0.7098 1.2305 10 8 5.4930 -1.1701 2.0293 11 7 7.6061 -0.8333 1.4436 12 6 8.2311 -1.4997 2.5977 13 6 9.7691 -1.4164 2.3902 14 1 10.3098 -1.2973 3.3291 15 6 10.1843 -2.6857 1.6420 16 6 11.5680 -2.5511 1.0399 17 7 11.5616 -1.3802 0.1474 18 6 11.8818 -1.4927 -1.1793 19 1 11.7267 -2.4291 -1.6947 20 6 12.4057 -0.4033 -1.8617 21 7 12.9072 0.6131 -1.1927 22 14 12.3988 -0.3800 -3.7296 23 1 11.0004 -0.4722 -4.2207 24 1 13.0106 0.8846 -4.2110 25 1 13.1805 -1.5340 -4.2419 26 6 11.1985 -0.0878 0.7389 27 6 9.8908 -0.1762 1.4850 28 1 9.7607 0.7217 2.0890 29 6 8.6729 -0.3227 0.5563 30 6 3.5806 -1.1970 -0.0049 31 6 2.1982 -1.1971 0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6582 2.1325 -0.0004 36 1 4.1204 2.1326 -0.0010 37 1 5.9254 -1.7492 -1.2487 38 1 5.9254 -0.2080 -2.1393 39 1 7.3787 -0.7219 -1.2489 40 1 7.9172 -2.5426 2.6401 41 1 7.9515 -0.9887 3.5189 42 1 10.1812 -3.5271 2.3348 43 1 9.4705 -2.8793 0.8413 44 1 11.8163 -3.4475 0.4715 45 1 12.2979 -2.4047 1.8361 46 1 13.2736 1.3742 -1.6695 47 1 11.1077 0.6549 -0.0538 48 1 11.9831 0.2222 1.4290 49 1 8.3923 0.6443 0.1386 50 1 8.8827 -1.0374 -0.2395 51 1 4.1206 -2.1323 -0.0091 52 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088174649.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:37 Heat of formation + Delta-G solvation = -6.874694 kcal Electronic energy + Delta-G solvation = -30837.126765 eV Core-core repulsion = 26993.863838 eV Total energy + Delta-G solvation = -3843.262927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.77921 -40.52778 -39.33691 -36.88038 -35.69393 -34.37337 -32.62685 -32.30870 -31.86634 -31.57655 -28.93679 -27.62606 -27.29275 -25.87267 -24.43438 -23.64640 -23.18621 -22.84500 -21.71176 -20.19619 -19.96324 -18.69607 -17.95436 -17.27540 -17.14023 -16.66561 -16.45110 -16.13764 -15.75339 -15.57215 -15.23928 -15.19099 -14.78767 -14.70811 -14.46171 -14.42508 -14.24034 -13.94521 -13.93048 -13.62307 -13.44771 -13.22536 -13.07816 -12.85607 -12.78801 -12.73045 -12.65423 -12.49248 -12.45339 -12.22355 -12.04143 -11.94569 -11.82161 -11.77107 -11.63213 -11.01282 -11.01142 -10.78828 -10.48753 -9.78994 -9.65444 -9.39484 -8.62238 -7.82373 -5.25093 0.39497 0.53218 1.51085 1.52954 1.57040 1.58987 1.98389 2.55425 2.85090 3.30318 3.42164 3.58242 3.66859 3.71523 3.78706 3.89039 3.97281 4.08326 4.10945 4.16806 4.22123 4.27987 4.40766 4.52627 4.54211 4.57557 4.63609 4.67364 4.70985 4.77106 4.80439 4.85195 4.86672 4.89527 4.96794 5.00218 5.09541 5.13551 5.16788 5.19265 5.20836 5.23309 5.29587 5.33905 5.41067 5.51692 5.60122 5.69226 5.70666 5.71104 5.79505 6.13454 6.43336 6.49762 7.10638 7.20726 7.90994 8.45769 9.24064 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.002972 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.612013 B = 9418.614552 C =10614.833583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.084 4.084 6 C -0.061 4.061 7 H 0.116 0.884 8 C -0.143 4.143 9 C 0.530 3.470 10 O -0.575 6.575 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.077 4.077 14 H 0.106 0.894 15 C -0.115 4.115 16 C 0.138 3.862 17 N -0.604 5.604 18 C -0.252 4.252 19 H 0.063 0.937 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.282 1.282 26 C 0.190 3.810 27 C -0.110 4.110 28 H 0.077 0.923 29 C 0.121 3.879 30 C -0.098 4.098 31 C -0.135 4.135 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.249 0.751 47 H 0.062 0.938 48 H 0.000 1.000 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.105 0.895 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 0.131 3.487 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.085 4.085 6 C -0.082 4.082 7 H 0.134 0.866 8 C -0.201 4.201 9 C 0.320 3.680 10 O -0.455 6.455 11 N -0.345 5.345 12 C -0.008 4.008 13 C -0.096 4.096 14 H 0.124 0.876 15 C -0.154 4.154 16 C 0.013 3.987 17 N -0.328 5.328 18 C -0.382 4.382 19 H 0.081 0.919 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.208 1.208 26 C 0.064 3.936 27 C -0.130 4.130 28 H 0.096 0.904 29 C -0.001 4.001 30 C -0.116 4.116 31 C -0.153 4.153 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.018 0.982 49 H 0.099 0.901 50 H 0.087 0.913 51 H 0.123 0.877 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.649 0.011 3.814 20.016 hybrid contribution 0.773 0.043 -0.896 1.184 sum -18.876 0.054 2.919 19.100 Atomic orbital electron populations 1.20820 0.89214 1.03534 1.03133 1.20281 0.97605 0.92867 0.98813 1.21274 0.93804 0.98533 1.01105 1.21261 0.95007 0.97371 0.99947 1.19409 0.93279 0.94160 1.01623 1.20221 0.92980 1.01781 0.93248 0.86635 1.21901 1.02051 1.00319 0.95798 1.20567 0.80344 0.79577 0.87560 1.90666 1.55200 1.51013 1.48602 1.48711 1.04897 1.56308 1.24555 1.22283 0.92685 0.97243 0.88568 1.22128 0.93277 0.95055 0.99154 0.87566 1.21640 0.97801 0.96853 0.99077 1.20799 0.94856 0.90324 0.92710 1.44229 1.78678 1.04140 1.05732 1.19333 1.34757 0.98242 0.85866 0.91880 1.25616 0.98439 0.98440 1.01416 1.70146 1.42860 1.09525 1.35278 0.85516 0.77971 0.76395 0.81630 1.20118 1.22297 1.20799 1.19800 0.90231 0.88479 0.95108 1.22002 0.95689 0.98444 0.96895 0.90428 1.22243 0.85589 0.99172 0.93067 1.20934 0.94739 0.97326 0.98632 1.21216 0.93692 0.98697 1.01704 0.90134 0.91090 0.90493 0.83809 0.84551 0.92663 0.89922 0.91297 0.91732 0.91552 0.90390 0.93483 0.92899 0.96127 0.94143 0.91942 0.98240 0.90142 0.91320 0.87705 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.92 5.88 -19.87 -0.12 -2.04 16 3 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 4 C -0.12 -2.65 9.67 22.27 0.22 -2.43 16 5 C -0.08 -2.20 4.39 -19.87 -0.09 -2.29 16 6 C -0.06 -1.59 2.27 -12.29 -0.03 -1.62 16 7 H 0.12 2.63 7.60 -2.39 -0.02 2.61 16 8 C -0.14 -3.54 8.82 71.98 0.64 -2.91 16 9 C 0.53 16.67 7.09 87.66 0.62 17.30 16 10 O -0.57 -21.54 15.46 -3.05 -0.05 -21.59 16 11 N -0.61 -18.48 3.33 -810.15 -2.70 -21.18 16 12 C 0.11 3.25 6.20 87.08 0.54 3.79 16 13 C -0.08 -2.23 3.59 -9.59 -0.03 -2.26 16 14 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 15 C -0.11 -3.53 4.74 30.13 0.14 -3.39 16 16 C 0.14 5.26 6.48 85.75 0.56 5.82 16 17 N -0.60 -27.75 2.91 -706.58 -2.05 -29.80 16 18 C -0.25 -12.91 9.68 84.03 0.81 -12.10 16 19 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 20 C -0.04 -2.28 4.94 84.86 0.42 -1.86 16 21 N -0.93 -51.93 11.17 21.65 0.24 -51.69 16 22 Si 0.96 42.60 29.59 68.60 2.03 44.63 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.19 8.23 4.73 85.63 0.41 8.64 16 27 C -0.11 -3.63 2.81 -10.87 -0.03 -3.66 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 C 0.12 3.80 4.11 86.41 0.36 4.15 16 30 C -0.10 -2.64 7.94 22.27 0.18 -2.47 16 31 C -0.14 -3.11 9.70 22.27 0.22 -2.90 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 34 H 0.08 0.83 8.09 -2.39 -0.02 0.82 16 35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.50 7.95 -2.91 -0.02 2.47 16 37 H 0.05 1.40 7.37 -2.39 -0.02 1.38 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.85 4.99 -2.39 -0.01 1.83 16 40 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.58 7.14 -2.39 -0.02 1.56 16 44 H 0.05 2.01 7.97 -2.39 -0.02 1.99 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 47 H 0.06 3.07 6.03 -2.39 -0.01 3.06 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.08 2.32 7.46 -2.38 -0.02 2.31 16 50 H 0.07 2.46 6.45 -2.39 -0.02 2.44 16 51 H 0.10 2.98 7.52 -2.91 -0.02 2.96 16 52 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -63.68 398.40 4.09 -59.59 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.89 Total: 23.35 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.73 Total: -3.31 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.51 Total: -102.67 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.68 4.09 -59.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088174649.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.719 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds