Wall clock time and date at job start Wed Apr 1 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00309 * 2 1 4 4 C 1.38236 * 119.99758 * 179.72874 * 3 2 1 5 5 C 1.38229 * 120.00361 * 0.25503 * 4 3 2 6 6 C 1.50700 * 120.00065 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46964 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47053 * 120.00442 * 6 5 4 9 9 C 1.50697 * 109.47070 * 239.99905 * 6 5 4 10 10 O 1.21284 * 120.00620 * 261.40510 * 9 6 5 11 11 N 1.34780 * 119.99938 * 81.40583 * 9 6 5 12 12 C 1.47761 * 125.82179 * 186.16709 * 11 9 6 13 13 C 1.56200 * 104.00279 * 154.06491 * 12 11 9 14 14 H 1.09005 * 113.91021 * 161.26392 * 13 12 11 15 15 C 1.52877 * 106.67420 * 286.46395 * 13 12 11 16 16 C 1.51604 * 111.55480 * 168.35390 * 15 13 12 17 17 N 1.44319 * 113.11334 * 320.91532 * 16 15 13 18 18 C 1.36935 * 116.35243 * 187.25672 * 17 16 15 19 19 H 1.08004 * 119.99968 * 148.21746 * 18 17 16 20 20 C 1.38808 * 120.00489 * 328.21551 * 18 17 16 21 21 N 1.31618 * 119.99941 * 338.97743 * 20 18 17 22 22 Si 1.86803 * 120.00498 * 158.97564 * 20 18 17 23 23 H 1.48499 * 109.47270 * 89.99984 * 22 20 18 24 24 H 1.48498 * 109.47156 * 210.00317 * 22 20 18 25 25 H 1.48501 * 109.46858 * 330.00216 * 22 20 18 26 26 C 1.43996 * 127.29065 * 7.27899 * 17 16 15 27 27 C 1.49947 * 116.09837 * 2.48552 * 26 17 16 28 28 H 1.08996 * 108.82503 * 141.04684 * 27 26 17 29 29 C 1.47618 * 125.81683 * 6.48415 * 11 9 6 30 30 C 1.38238 * 119.99665 * 0.02562 * 5 4 3 31 31 C 1.38229 * 120.00521 * 0.02562 * 30 5 4 32 32 H 1.08998 * 109.47431 * 89.99671 * 1 2 3 33 33 H 1.08999 * 109.47194 * 210.00273 * 1 2 3 34 34 H 1.09006 * 109.46971 * 329.99548 * 1 2 3 35 35 H 1.07998 * 119.99766 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99516 * 180.27969 * 4 3 2 37 37 H 1.09004 * 109.47510 * 58.54010 * 8 6 5 38 38 H 1.08996 * 109.47301 * 178.54327 * 8 6 5 39 39 H 1.09011 * 109.46978 * 298.54502 * 8 6 5 40 40 H 1.08994 * 110.50267 * 272.80909 * 12 11 9 41 41 H 1.09005 * 110.49694 * 35.49009 * 12 11 9 42 42 H 1.08992 * 109.06853 * 47.81840 * 15 13 12 43 43 H 1.09002 * 109.06026 * 288.88586 * 15 13 12 44 44 H 1.09005 * 108.75478 * 199.97391 * 16 15 13 45 45 H 1.08998 * 108.65844 * 81.78919 * 16 15 13 46 46 H 0.97002 * 120.00630 * 179.97438 * 21 20 18 47 47 H 1.09001 * 108.15685 * 240.75554 * 26 17 16 48 48 H 1.09004 * 108.15396 * 124.20291 * 26 17 16 49 49 H 1.09004 * 110.07868 * 299.81264 * 29 11 9 50 50 H 1.08994 * 110.08397 * 61.37781 * 29 11 9 51 51 H 1.08007 * 119.99685 * 179.97438 * 30 5 4 52 52 H 1.07996 * 120.00267 * 179.97438 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0057 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0002 0.0128 7 1 6.1420 1.0274 0.0172 8 6 6.2830 -0.7244 1.2625 9 6 6.2865 -0.7078 -1.2170 10 8 6.6363 -1.8671 -1.1488 11 7 6.3520 -0.0523 -2.3929 12 6 6.7042 -0.6498 -3.6976 13 6 6.0020 0.2777 -4.7400 14 1 6.4030 0.1904 -5.7498 15 6 4.5068 -0.0322 -4.6658 16 6 3.6869 0.9951 -5.4213 17 7 4.1826 2.3415 -5.2651 18 6 3.4065 3.3397 -5.7908 19 1 3.3881 4.3128 -5.3226 20 6 2.6434 3.1011 -6.9254 21 7 2.9527 2.1058 -7.7292 22 14 1.1773 4.1925 -7.3118 23 1 1.6184 5.3350 -8.1515 24 1 0.1538 3.4052 -8.0451 25 1 0.5944 4.7047 -6.0457 26 6 5.4019 2.7528 -4.6189 27 6 6.2757 1.6517 -4.0969 28 1 7.3179 1.9132 -4.2797 29 6 6.0904 1.3863 -2.5957 30 6 3.5804 -1.1972 0.0001 31 6 2.1982 -1.1972 -0.0066 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1324 0.0004 36 1 4.1206 2.1323 0.0102 37 1 5.8984 -1.7443 1.2716 38 1 7.3727 -0.7471 1.2544 39 1 5.9371 -0.1978 2.1521 40 1 7.7845 -0.6412 -3.8422 41 1 6.3166 -1.6661 -3.7691 42 1 4.1957 -0.0377 -3.6213 43 1 4.3258 -1.0177 -5.0951 44 1 2.6587 0.9562 -5.0615 45 1 3.6968 0.7386 -6.4806 46 1 2.4192 1.9387 -8.5220 47 1 5.1412 3.4041 -3.7847 48 1 5.9829 3.3386 -5.3313 49 1 5.0703 1.6270 -2.2963 50 1 6.8001 1.9805 -2.0202 51 1 4.1205 -2.1326 0.0000 52 1 1.6582 -2.1325 -0.0116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088174650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:43 Heat of formation + Delta-G solvation = 6.958394 kcal Electronic energy + Delta-G solvation = -31655.913187 eV Core-core repulsion = 27813.250108 eV Total energy + Delta-G solvation = -3842.663079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.64712 -39.40702 -38.26082 -35.59281 -34.63713 -32.49831 -31.52460 -31.18328 -30.87112 -30.26499 -27.94461 -26.73582 -25.66891 -24.38236 -23.09301 -22.70685 -21.92622 -21.49357 -20.81711 -18.89605 -17.87651 -17.17411 -16.98869 -16.49723 -15.58783 -15.40977 -15.22170 -14.90069 -14.82996 -14.15151 -13.92009 -13.79283 -13.78624 -13.50197 -13.31401 -13.16861 -12.93603 -12.71379 -12.64586 -12.56782 -12.30323 -12.15189 -12.01163 -11.79643 -11.71522 -11.49704 -11.23182 -11.10039 -11.00739 -10.88878 -10.75902 -10.54288 -10.27989 -10.19927 -9.84383 -9.70142 -9.59490 -9.52744 -8.88503 -8.54288 -8.46052 -8.42256 -6.55447 -5.60217 -3.32852 1.28631 1.44293 2.70915 3.09294 3.36109 3.43644 3.46630 3.74531 4.46058 4.52517 4.61940 4.75576 4.79937 4.92317 4.95672 5.00127 5.02643 5.11332 5.23403 5.35218 5.35451 5.41906 5.45448 5.57747 5.58778 5.60225 5.64031 5.69561 5.75412 5.77146 5.79824 5.86619 5.98195 6.02226 6.06974 6.08596 6.11179 6.20683 6.32373 6.36369 6.42687 6.57431 6.59191 6.61996 6.63793 6.72315 6.81326 6.88469 7.01366 7.32829 7.65537 7.80404 7.95885 8.24851 8.56355 9.30555 9.99089 10.30494 11.23643 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.004295 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.449162 B = 6518.054880 C = 8306.951360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.102 4.102 5 C -0.082 4.082 6 C -0.065 4.065 7 H 0.095 0.905 8 C -0.128 4.128 9 C 0.538 3.462 10 O -0.547 6.547 11 N -0.611 5.611 12 C 0.107 3.893 13 C -0.082 4.082 14 H 0.101 0.899 15 C -0.119 4.119 16 C 0.157 3.843 17 N -0.583 5.583 18 C -0.269 4.269 19 H 0.062 0.938 20 C 0.010 3.990 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.177 3.823 27 C -0.099 4.099 28 H 0.072 0.928 29 C 0.108 3.892 30 C -0.103 4.103 31 C -0.119 4.119 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.080 0.920 46 H 0.253 0.747 47 H 0.012 0.988 48 H 0.023 0.977 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.123 0.877 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -4.175 16.120 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.082 4.082 6 C -0.087 4.087 7 H 0.114 0.886 8 C -0.186 4.186 9 C 0.327 3.673 10 O -0.425 6.425 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.101 4.101 14 H 0.119 0.881 15 C -0.157 4.157 16 C 0.032 3.968 17 N -0.307 5.307 18 C -0.399 4.399 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.051 3.949 27 C -0.118 4.118 28 H 0.090 0.910 29 C -0.015 4.015 30 C -0.121 4.121 31 C -0.137 4.137 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.030 0.970 48 H 0.041 0.959 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.141 0.859 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.254 -4.947 16.126 17.179 hybrid contribution -0.787 0.680 -0.402 1.115 sum 2.467 -4.268 15.724 16.479 Atomic orbital electron populations 1.20804 0.91287 1.02458 1.02640 1.19942 0.96096 0.93219 0.99107 1.21003 0.94020 0.97654 1.00567 1.21005 0.94315 0.97106 0.99614 1.19333 0.92997 0.93734 1.02163 1.20240 0.92961 1.01380 0.94090 0.88633 1.21640 1.01146 1.00969 0.94812 1.20078 0.77446 0.86476 0.83341 1.90665 1.49591 1.17226 1.85013 1.48677 1.67862 1.10480 1.07356 1.22688 0.98901 0.97933 0.82003 1.22276 0.96847 0.93157 0.97795 0.88132 1.21560 0.93879 0.99693 1.00566 1.20217 0.92971 0.82392 1.01223 1.42586 1.19466 1.03284 1.65393 1.19070 1.20597 0.94128 1.06056 0.92037 1.25077 1.00766 0.98126 0.95067 1.69935 1.38837 1.31938 1.12570 0.86378 0.82891 0.80017 0.77975 1.21339 1.21551 1.20479 1.19332 0.87569 0.92784 0.95215 1.21502 1.00605 0.96913 0.92775 0.90975 1.22235 1.01373 0.80420 0.97440 1.21013 0.94182 0.97737 0.99173 1.20975 0.93967 0.97533 1.01243 0.90874 0.91744 0.91591 0.85901 0.85973 0.91386 0.92089 0.91857 0.91853 0.90658 0.93294 0.92806 0.96733 0.90240 0.93697 0.97037 0.95874 0.90581 0.91761 0.85940 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.08 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 4 C -0.10 -1.27 9.13 -39.59 -0.36 -1.63 16 5 C -0.08 -1.05 4.77 -104.63 -0.50 -1.55 16 6 C -0.07 -0.80 2.40 -92.93 -0.22 -1.02 16 7 H 0.10 1.01 7.21 -51.93 -0.37 0.63 16 8 C -0.13 -1.38 8.49 37.16 0.32 -1.07 16 9 C 0.54 8.16 6.62 -10.99 -0.07 8.09 16 10 O -0.55 -9.79 16.39 5.55 0.09 -9.70 16 11 N -0.61 -9.11 2.80 -169.41 -0.47 -9.59 16 12 C 0.11 1.60 6.23 -1.63 -0.01 1.59 16 13 C -0.08 -1.35 3.77 -88.36 -0.33 -1.69 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 15 C -0.12 -2.27 4.98 -27.50 -0.14 -2.40 16 16 C 0.16 3.71 5.23 -5.91 -0.03 3.68 16 17 N -0.58 -14.12 3.21 -179.59 -0.58 -14.70 16 18 C -0.27 -7.22 9.23 -15.06 -0.14 -7.36 16 19 H 0.06 1.64 7.91 -52.48 -0.42 1.22 16 20 C 0.01 0.26 5.01 -17.43 -0.09 0.17 16 21 N -0.89 -25.24 10.93 55.49 0.61 -24.63 16 22 Si 0.90 21.36 29.60 -169.99 -5.03 16.33 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 3.55 5.67 -6.89 -0.04 3.51 16 27 C -0.10 -1.58 2.68 -91.23 -0.24 -1.83 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 C 0.11 1.53 4.84 -3.13 -0.02 1.52 16 30 C -0.10 -1.37 8.80 -39.58 -0.35 -1.72 16 31 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.30 7.95 -52.49 -0.42 0.89 16 37 H 0.07 0.80 7.14 -51.93 -0.37 0.42 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.19 7.99 -51.93 -0.41 0.77 16 42 H 0.05 0.95 6.77 -51.93 -0.35 0.60 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.08 2.14 5.71 -51.93 -0.30 1.84 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.01 0.23 7.78 -51.93 -0.40 -0.17 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.18 7.28 -51.93 -0.38 0.80 16 50 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 51 H 0.12 1.65 7.57 -52.48 -0.40 1.25 16 52 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -30.79 402.63 -11.43 -42.22 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.86 Total: 1.80 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.25 Total: -7.80 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.44 Total: -48.91 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.79 -11.43 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088174650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.174 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds