Wall clock time and date at job start Wed Apr 1 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00309 * 2 1 4 4 C 1.38236 * 119.99758 * 179.72874 * 3 2 1 5 5 C 1.38229 * 120.00361 * 0.25503 * 4 3 2 6 6 C 1.50700 * 120.00065 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46964 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47053 * 120.00442 * 6 5 4 9 9 C 1.50697 * 109.47070 * 239.99905 * 6 5 4 10 10 O 1.21284 * 120.00620 * 261.40510 * 9 6 5 11 11 N 1.34780 * 119.99938 * 81.40583 * 9 6 5 12 12 C 1.47761 * 125.82179 * 186.16709 * 11 9 6 13 13 C 1.56200 * 104.00279 * 154.06491 * 12 11 9 14 14 H 1.09005 * 113.91021 * 161.26392 * 13 12 11 15 15 C 1.52877 * 106.67420 * 286.46395 * 13 12 11 16 16 C 1.51604 * 111.55480 * 168.35390 * 15 13 12 17 17 N 1.44319 * 113.11334 * 320.91532 * 16 15 13 18 18 C 1.36935 * 116.35243 * 187.25672 * 17 16 15 19 19 H 1.08004 * 119.99968 * 148.21746 * 18 17 16 20 20 C 1.38808 * 120.00489 * 328.21551 * 18 17 16 21 21 N 1.31618 * 119.99941 * 338.97743 * 20 18 17 22 22 Si 1.86803 * 120.00498 * 158.97564 * 20 18 17 23 23 H 1.48499 * 109.47270 * 89.99984 * 22 20 18 24 24 H 1.48498 * 109.47156 * 210.00317 * 22 20 18 25 25 H 1.48501 * 109.46858 * 330.00216 * 22 20 18 26 26 C 1.43996 * 127.29065 * 7.27899 * 17 16 15 27 27 C 1.49947 * 116.09837 * 2.48552 * 26 17 16 28 28 H 1.08996 * 108.82503 * 141.04684 * 27 26 17 29 29 C 1.47618 * 125.81683 * 6.48415 * 11 9 6 30 30 C 1.38238 * 119.99665 * 0.02562 * 5 4 3 31 31 C 1.38229 * 120.00521 * 0.02562 * 30 5 4 32 32 H 1.08998 * 109.47431 * 89.99671 * 1 2 3 33 33 H 1.08999 * 109.47194 * 210.00273 * 1 2 3 34 34 H 1.09006 * 109.46971 * 329.99548 * 1 2 3 35 35 H 1.07998 * 119.99766 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99516 * 180.27969 * 4 3 2 37 37 H 1.09004 * 109.47510 * 58.54010 * 8 6 5 38 38 H 1.08996 * 109.47301 * 178.54327 * 8 6 5 39 39 H 1.09011 * 109.46978 * 298.54502 * 8 6 5 40 40 H 1.08994 * 110.50267 * 272.80909 * 12 11 9 41 41 H 1.09005 * 110.49694 * 35.49009 * 12 11 9 42 42 H 1.08992 * 109.06853 * 47.81840 * 15 13 12 43 43 H 1.09002 * 109.06026 * 288.88586 * 15 13 12 44 44 H 1.09005 * 108.75478 * 199.97391 * 16 15 13 45 45 H 1.08998 * 108.65844 * 81.78919 * 16 15 13 46 46 H 0.97002 * 120.00630 * 179.97438 * 21 20 18 47 47 H 1.09001 * 108.15685 * 240.75554 * 26 17 16 48 48 H 1.09004 * 108.15396 * 124.20291 * 26 17 16 49 49 H 1.09004 * 110.07868 * 299.81264 * 29 11 9 50 50 H 1.08994 * 110.08397 * 61.37781 * 29 11 9 51 51 H 1.08007 * 119.99685 * 179.97438 * 30 5 4 52 52 H 1.07996 * 120.00267 * 179.97438 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0057 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0002 0.0128 7 1 6.1420 1.0274 0.0172 8 6 6.2830 -0.7244 1.2625 9 6 6.2865 -0.7078 -1.2170 10 8 6.6363 -1.8671 -1.1488 11 7 6.3520 -0.0523 -2.3929 12 6 6.7042 -0.6498 -3.6976 13 6 6.0020 0.2777 -4.7400 14 1 6.4030 0.1904 -5.7498 15 6 4.5068 -0.0322 -4.6658 16 6 3.6869 0.9951 -5.4213 17 7 4.1826 2.3415 -5.2651 18 6 3.4065 3.3397 -5.7908 19 1 3.3881 4.3128 -5.3226 20 6 2.6434 3.1011 -6.9254 21 7 2.9527 2.1058 -7.7292 22 14 1.1773 4.1925 -7.3118 23 1 1.6184 5.3350 -8.1515 24 1 0.1538 3.4052 -8.0451 25 1 0.5944 4.7047 -6.0457 26 6 5.4019 2.7528 -4.6189 27 6 6.2757 1.6517 -4.0969 28 1 7.3179 1.9132 -4.2797 29 6 6.0904 1.3863 -2.5957 30 6 3.5804 -1.1972 0.0001 31 6 2.1982 -1.1972 -0.0066 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1324 0.0004 36 1 4.1206 2.1323 0.0102 37 1 5.8984 -1.7443 1.2716 38 1 7.3727 -0.7471 1.2544 39 1 5.9371 -0.1978 2.1521 40 1 7.7845 -0.6412 -3.8422 41 1 6.3166 -1.6661 -3.7691 42 1 4.1957 -0.0377 -3.6213 43 1 4.3258 -1.0177 -5.0951 44 1 2.6587 0.9562 -5.0615 45 1 3.6968 0.7386 -6.4806 46 1 2.4192 1.9387 -8.5220 47 1 5.1412 3.4041 -3.7847 48 1 5.9829 3.3386 -5.3313 49 1 5.0703 1.6270 -2.2963 50 1 6.8001 1.9805 -2.0202 51 1 4.1205 -2.1326 0.0000 52 1 1.6582 -2.1325 -0.0116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088174650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:41 Heat of formation + Delta-G solvation = -7.502875 kcal Electronic energy + Delta-G solvation = -31656.540274 eV Core-core repulsion = 27813.250108 eV Total energy + Delta-G solvation = -3843.290167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.83439 -40.52544 -39.50489 -37.26062 -35.61637 -34.15550 -33.07856 -32.17504 -31.94838 -31.76573 -29.37782 -27.61180 -27.17877 -25.85036 -24.44734 -23.76364 -23.38645 -22.88356 -21.85355 -20.02137 -19.40596 -18.88483 -18.19119 -17.62030 -16.92679 -16.80146 -16.51291 -16.19936 -15.88826 -15.66864 -15.55104 -15.22543 -14.77156 -14.68114 -14.61892 -14.31703 -14.24689 -13.95239 -13.88009 -13.80453 -13.46002 -13.28992 -13.03512 -12.98903 -12.91702 -12.84248 -12.68079 -12.52012 -12.40064 -12.22024 -12.07758 -11.95958 -11.84196 -11.74791 -11.48761 -11.26728 -11.17519 -10.90020 -10.53716 -9.85079 -9.64461 -9.41584 -8.58444 -7.64512 -5.42487 0.33037 0.48032 1.45881 1.48525 1.56192 1.57559 1.95941 2.52181 2.78545 3.25678 3.34751 3.51032 3.67208 3.76086 3.77401 3.85043 3.87271 4.05604 4.10003 4.12250 4.16479 4.30686 4.35542 4.48311 4.51646 4.54068 4.54645 4.64304 4.67746 4.77664 4.79816 4.80788 4.84828 4.90416 4.92344 4.96038 5.00112 5.06445 5.08634 5.15681 5.20196 5.24615 5.26125 5.30699 5.36784 5.42524 5.48330 5.62737 5.69281 5.69979 5.95920 6.08526 6.48514 6.49699 7.08881 7.25446 8.07424 8.28118 9.14771 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.004295 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.449162 B = 6518.054880 C = 8306.951360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.088 4.088 6 C -0.060 4.060 7 H 0.119 0.881 8 C -0.124 4.124 9 C 0.535 3.465 10 O -0.579 6.579 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.080 4.080 14 H 0.098 0.902 15 C -0.105 4.105 16 C 0.168 3.832 17 N -0.594 5.594 18 C -0.281 4.281 19 H 0.062 0.938 20 C -0.040 4.040 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.175 3.825 27 C -0.095 4.095 28 H 0.101 0.899 29 C 0.115 3.885 30 C -0.118 4.118 31 C -0.130 4.130 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.056 0.944 44 H -0.018 1.018 45 H 0.048 0.952 46 H 0.249 0.751 47 H 0.023 0.977 48 H 0.012 0.988 49 H 0.063 0.937 50 H 0.100 0.900 51 H 0.113 0.887 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -3.002 17.776 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.125 4.125 5 C -0.089 4.089 6 C -0.081 4.081 7 H 0.137 0.863 8 C -0.182 4.182 9 C 0.325 3.675 10 O -0.459 6.459 11 N -0.345 5.345 12 C -0.007 4.007 13 C -0.099 4.099 14 H 0.116 0.884 15 C -0.143 4.143 16 C 0.043 3.957 17 N -0.318 5.318 18 C -0.412 4.412 19 H 0.080 0.920 20 C -0.237 4.237 21 N -0.563 5.563 22 Si 0.785 3.215 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.049 3.951 27 C -0.114 4.114 28 H 0.119 0.881 29 C -0.007 4.007 30 C -0.136 4.136 31 C -0.148 4.148 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.000 1.000 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.030 0.970 49 H 0.082 0.918 50 H 0.118 0.882 51 H 0.132 0.868 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.121 -3.749 17.801 18.652 hybrid contribution -1.081 0.322 -0.926 1.459 sum 3.040 -3.427 16.875 17.486 Atomic orbital electron populations 1.20837 0.89826 1.03833 1.02565 1.20258 0.97375 0.93125 0.98626 1.21302 0.94480 0.98291 1.00555 1.21253 0.94477 0.97672 0.99086 1.19423 0.93391 0.93693 1.02349 1.20285 0.92410 1.02368 0.93010 0.86309 1.21627 1.01311 1.00239 0.95015 1.20609 0.76719 0.86169 0.84002 1.90651 1.51005 1.18696 1.85555 1.48744 1.67654 1.10809 1.07272 1.22587 0.99820 0.96821 0.81521 1.22206 0.94834 0.94400 0.98476 0.88354 1.21363 0.95312 0.98234 0.99392 1.19909 0.92375 0.83667 0.99766 1.42794 1.20871 1.02842 1.65256 1.19393 1.21221 0.94677 1.05919 0.92012 1.25785 1.03081 0.99592 0.95244 1.70100 1.39676 1.33562 1.12926 0.85441 0.79788 0.78413 0.77820 1.20782 1.22011 1.19731 1.19439 0.86401 0.94390 0.94858 1.21434 1.01090 0.95015 0.93892 0.88097 1.22206 1.01813 0.80345 0.96329 1.21089 0.94666 0.97810 1.00025 1.21203 0.93964 0.98402 1.01271 0.91532 0.90365 0.90338 0.84705 0.84100 0.92917 0.91689 0.89881 0.89671 0.91717 0.93579 0.92492 0.99994 0.93508 0.94169 0.95935 0.96990 0.91814 0.88151 0.86850 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.01 71.24 0.71 -1.41 16 2 C -0.09 -2.22 5.88 -19.86 -0.12 -2.33 16 3 C -0.13 -3.02 9.70 22.27 0.22 -2.81 16 4 C -0.11 -2.44 9.13 22.27 0.20 -2.24 16 5 C -0.09 -2.13 4.77 -19.87 -0.09 -2.23 16 6 C -0.06 -1.32 2.40 -12.29 -0.03 -1.35 16 7 H 0.12 2.05 7.21 -2.39 -0.02 2.03 16 8 C -0.12 -2.44 8.49 71.98 0.61 -1.83 16 9 C 0.54 15.24 6.62 87.66 0.58 15.82 16 10 O -0.58 -20.17 16.39 -3.04 -0.05 -20.22 16 11 N -0.61 -16.76 2.80 -808.27 -2.27 -19.03 16 12 C 0.11 3.20 6.23 87.25 0.54 3.75 16 13 C -0.08 -2.54 3.77 -9.33 -0.04 -2.57 16 14 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 15 C -0.10 -4.01 4.98 30.10 0.15 -3.86 16 16 C 0.17 8.17 5.23 86.33 0.45 8.62 16 17 N -0.59 -28.88 3.21 -722.09 -2.32 -31.20 16 18 C -0.28 -15.23 9.23 84.03 0.78 -14.46 16 19 H 0.06 3.28 7.91 -2.91 -0.02 3.25 16 20 C -0.04 -2.20 5.01 84.86 0.42 -1.78 16 21 N -0.92 -53.41 10.93 21.65 0.24 -53.17 16 22 Si 0.96 44.28 29.60 68.60 2.03 46.31 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.17 6.74 5.67 85.86 0.49 7.23 16 27 C -0.10 -2.81 2.68 -11.19 -0.03 -2.84 16 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 29 C 0.12 2.90 4.84 86.36 0.42 3.31 16 30 C -0.12 -3.09 8.80 22.27 0.20 -2.89 16 31 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 35 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.14 2.59 7.95 -2.91 -0.02 2.57 16 37 H 0.05 1.19 7.14 -2.38 -0.02 1.18 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.96 7.99 -2.38 -0.02 1.94 16 42 H 0.05 1.78 6.77 -2.39 -0.02 1.76 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H -0.02 -0.97 8.12 -2.38 -0.02 -0.99 16 45 H 0.05 2.63 5.71 -2.39 -0.01 2.62 16 46 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 47 H 0.02 0.84 7.78 -2.39 -0.02 0.82 16 48 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.06 1.80 7.28 -2.39 -0.02 1.78 16 50 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 51 H 0.11 3.11 7.57 -2.91 -0.02 3.09 16 52 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -67.68 402.63 4.20 -63.48 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.88 Total: 20.68 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.68 Total: -6.85 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.34 Total: -103.40 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.22 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.68 4.20 -63.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088174650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds