Wall clock time and date at job start Wed Apr 1 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99841 * 2 1 4 4 C 1.38211 * 119.99886 * 180.21055 * 3 2 1 5 5 C 1.38257 * 119.99758 * 359.85252 * 4 3 2 6 6 C 1.38212 * 120.00428 * 359.95971 * 5 4 3 7 7 C 1.38212 * 120.00194 * 179.81054 * 2 1 3 8 8 C 1.50710 * 119.99897 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46727 * 2.25704 * 8 7 2 10 10 C 1.52993 * 109.47001 * 242.25636 * 8 7 2 11 11 C 1.50699 * 109.47053 * 122.25427 * 8 7 2 12 12 O 1.21275 * 119.99955 * 92.86769 * 11 8 7 13 13 N 1.34779 * 119.99854 * 272.86878 * 11 8 7 14 14 C 1.47641 * 125.72816 * 185.36489 * 13 11 8 15 15 C 1.55909 * 104.42189 * 155.03661 * 14 13 11 16 16 H 1.09000 * 113.53299 * 159.11606 * 15 14 13 17 17 C 1.50817 * 105.24712 * 282.20799 * 15 14 13 18 18 C 1.52780 * 110.41050 * 163.78933 * 17 15 14 19 19 N 1.47200 * 107.80134 * 302.40502 * 18 17 15 20 20 C 1.36936 * 121.32715 * 237.99379 * 19 18 17 21 21 H 1.08004 * 119.99943 * 32.05075 * 20 19 18 22 22 C 1.38811 * 120.00160 * 212.04708 * 20 19 18 23 23 N 1.31620 * 120.00208 * 11.03909 * 22 20 19 24 24 Si 1.86803 * 120.00066 * 191.04295 * 22 20 19 25 25 H 1.48496 * 109.47330 * 59.99984 * 24 22 20 26 26 H 1.48501 * 109.47293 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47033 * 299.99758 * 24 22 20 28 28 C 1.46720 * 117.34240 * 57.98211 * 19 18 17 29 29 C 1.50982 * 111.05863 * 307.65793 * 28 19 18 30 30 H 1.08998 * 108.99130 * 166.60303 * 29 28 19 31 31 C 1.47448 * 125.73462 * 5.36495 * 13 11 8 32 32 H 1.09000 * 109.47413 * 273.48471 * 1 2 3 33 33 H 1.09003 * 109.47388 * 33.48693 * 1 2 3 34 34 H 1.09000 * 109.47296 * 153.48886 * 1 2 3 35 35 H 1.08000 * 120.00204 * 0.03699 * 3 2 1 36 36 H 1.07993 * 120.00134 * 179.83423 * 4 3 2 37 37 H 1.08004 * 119.99806 * 179.97438 * 5 4 3 38 38 H 1.07999 * 120.00239 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.47337 * 64.80373 * 10 8 7 40 40 H 1.08998 * 109.47406 * 184.80127 * 10 8 7 41 41 H 1.09006 * 109.47372 * 304.80348 * 10 8 7 42 42 H 1.09001 * 110.44592 * 36.29980 * 14 13 11 43 43 H 1.09009 * 110.54749 * 273.82537 * 14 13 11 44 44 H 1.08991 * 109.30898 * 43.63266 * 17 15 14 45 45 H 1.09003 * 109.51965 * 284.07591 * 17 15 14 46 46 H 1.09001 * 109.79196 * 182.82561 * 18 17 15 47 47 H 1.09000 * 109.83988 * 62.01101 * 18 17 15 48 48 H 0.96998 * 120.00374 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.16060 * 187.25740 * 28 19 18 50 50 H 1.08994 * 109.16673 * 68.06814 * 28 19 18 51 51 H 1.09005 * 110.06212 * 61.31331 * 31 13 11 52 52 H 1.08996 * 110.06332 * 299.80658 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0044 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0018 7 6 2.1981 -1.1969 0.0040 8 6 1.4445 -2.5021 0.0089 9 1 0.3735 -2.3034 -0.0319 10 6 1.7716 -3.2750 1.2881 11 6 1.8496 -3.3205 -1.1900 12 8 2.7482 -4.1295 -1.0963 13 7 1.2132 -3.1533 -2.3662 14 6 1.4277 -3.9590 -3.5847 15 6 0.0906 -3.8297 -4.3760 16 1 0.1904 -4.0522 -5.4384 17 6 -0.8708 -4.7645 -3.6857 18 6 -2.3084 -4.4476 -4.0946 19 7 -2.5735 -3.0404 -3.7534 20 6 -3.5951 -2.6925 -2.9106 21 1 -3.8833 -3.3559 -2.1086 22 6 -4.2605 -1.4870 -3.0871 23 7 -4.0645 -0.7810 -4.1805 24 14 -5.4339 -0.8667 -1.7726 25 1 -4.6967 -0.6861 -0.4963 26 1 -6.0124 0.4329 -2.1989 27 1 -6.5259 -1.8540 -1.5781 28 6 -1.6992 -2.0256 -4.3521 29 6 -0.2450 -2.3500 -4.1080 30 1 0.3712 -1.7254 -4.7547 31 6 0.1859 -2.1350 -2.6524 32 1 -0.3634 0.0625 1.0257 33 1 -0.3634 0.8571 -0.5670 34 1 -0.3634 -0.9196 -0.4587 35 1 1.6582 2.1327 0.0006 36 1 4.1203 2.1326 -0.0071 37 1 5.3516 0.0000 -0.0096 38 1 4.1206 -2.1323 -0.0032 39 1 1.4018 -2.7218 2.1515 40 1 1.2948 -4.2545 1.2528 41 1 2.8513 -3.3993 1.3715 42 1 1.6168 -5.0004 -3.3241 43 1 2.2560 -3.5570 -4.1683 44 1 -0.7716 -4.6508 -2.6063 45 1 -0.6385 -5.7935 -3.9600 46 1 -2.9975 -5.0951 -3.5525 47 1 -2.4291 -4.5963 -5.1676 48 1 -4.5297 0.0611 -4.3040 49 1 -1.9272 -1.0537 -3.9144 50 1 -1.8813 -1.9849 -5.4260 51 1 0.6052 -1.1362 -2.5303 52 1 -0.6669 -2.2668 -1.9866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088210135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:46 Heat of formation + Delta-G solvation = -5.185786 kcal Electronic energy + Delta-G solvation = -32079.002005 eV Core-core repulsion = 28235.812315 eV Total energy + Delta-G solvation = -3843.189690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.90070 -40.58989 -39.41440 -36.85103 -35.31477 -34.29063 -33.51827 -32.40921 -32.16817 -30.49559 -28.99288 -27.84415 -27.24691 -26.13497 -24.80150 -23.39368 -23.14335 -22.54719 -21.71294 -20.24612 -19.80008 -18.69909 -18.15171 -17.74344 -17.04417 -16.73044 -16.39155 -16.26530 -15.70351 -15.54751 -15.26817 -15.12230 -14.94273 -14.82793 -14.55468 -14.27045 -14.02793 -13.90170 -13.79683 -13.54713 -13.41697 -13.16445 -13.10364 -13.01610 -12.80357 -12.78109 -12.75708 -12.49378 -12.48892 -12.29370 -12.04902 -11.99060 -11.91612 -11.63334 -11.59234 -11.07263 -11.01218 -10.89556 -10.49666 -9.74075 -9.63062 -9.51058 -8.54266 -7.82228 -5.32079 0.35318 0.44849 1.50241 1.51441 1.54980 1.57585 1.98650 2.54050 2.79295 3.30853 3.41553 3.64398 3.66277 3.73344 3.76851 3.87124 3.96657 4.00325 4.04482 4.21334 4.26683 4.27878 4.38105 4.43843 4.55201 4.59842 4.64690 4.65162 4.72312 4.74490 4.76945 4.80869 4.87602 4.89055 4.96491 4.97517 5.07837 5.11396 5.15351 5.16933 5.17815 5.20569 5.29891 5.36168 5.41987 5.55534 5.59023 5.59340 5.69212 5.70566 5.78726 6.08374 6.45899 6.48967 7.07895 7.21999 7.89816 8.47209 9.23730 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.004572 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.255561 B = 6122.932930 C = 7549.489443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.086 4.086 8 C -0.073 4.073 9 H 0.103 0.897 10 C -0.123 4.123 11 C 0.537 3.463 12 O -0.577 6.577 13 N -0.610 5.610 14 C 0.109 3.891 15 C -0.079 4.079 16 H 0.112 0.888 17 C -0.116 4.116 18 C 0.139 3.861 19 N -0.603 5.603 20 C -0.257 4.257 21 H 0.058 0.942 22 C -0.035 4.035 23 N -0.930 5.930 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.282 1.282 28 C 0.193 3.807 29 C -0.109 4.109 30 H 0.081 0.919 31 C 0.129 3.871 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.023 0.977 48 H 0.250 0.750 49 H 0.057 0.943 50 H 0.002 0.998 51 H 0.065 0.935 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 1.603 6.529 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.086 4.086 8 C -0.094 4.094 9 H 0.121 0.879 10 C -0.180 4.180 11 C 0.326 3.674 12 O -0.457 6.457 13 N -0.342 5.342 14 C -0.013 4.013 15 C -0.098 4.098 16 H 0.130 0.870 17 C -0.155 4.155 18 C 0.014 3.986 19 N -0.326 5.326 20 C -0.387 4.387 21 H 0.076 0.924 22 C -0.231 4.231 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.208 1.208 28 C 0.067 3.933 29 C -0.130 4.130 30 H 0.099 0.901 31 C 0.006 3.994 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.041 0.959 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.020 0.980 51 H 0.083 0.917 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.413 1.314 6.616 15.913 hybrid contribution -1.018 0.357 0.322 1.126 sum 13.395 1.671 6.938 15.177 Atomic orbital electron populations 1.21017 0.90888 1.03213 1.03224 1.19917 0.96273 0.92701 0.99168 1.21293 0.94845 0.97617 1.00604 1.21463 0.94158 0.98865 0.98754 1.21360 1.00912 0.91977 1.00493 1.21113 0.93552 0.98907 0.99996 1.19263 0.93729 0.92626 1.02994 1.20390 1.01789 0.93317 0.93885 0.87935 1.21603 1.02513 0.99308 0.94583 1.20458 0.80878 0.82640 0.83396 1.90619 1.31412 1.38948 1.84754 1.48714 1.39913 1.34352 1.11257 1.22627 0.97746 0.95794 0.85117 1.21903 0.93393 0.94431 1.00041 0.87000 1.21457 0.95835 0.98710 0.99508 1.21020 0.94608 0.86053 0.96919 1.44122 1.32983 1.01252 1.54262 1.19266 1.09329 1.03943 1.06203 0.92399 1.25735 0.99351 0.99980 0.98047 1.70099 1.45808 1.15347 1.26307 0.85547 0.79413 0.77074 0.79658 1.19884 1.22099 1.20793 1.19832 0.85583 0.93306 0.94571 1.21934 0.98896 0.97196 0.94966 0.90072 1.21835 0.89650 0.90429 0.97472 0.89881 0.90797 0.92031 0.84219 0.83407 0.84131 0.86776 0.90149 0.92452 0.91969 0.90875 0.90975 0.93869 0.90583 0.93357 0.95941 0.94073 0.92414 0.97981 0.91705 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.28 71.24 0.66 -2.51 16 2 C -0.08 -2.00 5.88 -19.87 -0.12 -2.12 16 3 C -0.13 -2.68 9.72 22.27 0.22 -2.47 16 4 C -0.11 -2.20 10.05 22.27 0.22 -1.97 16 5 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 6 C -0.12 -3.01 8.74 22.27 0.19 -2.82 16 7 C -0.09 -2.28 4.77 -19.86 -0.09 -2.37 16 8 C -0.07 -2.06 2.21 -12.29 -0.03 -2.09 16 9 H 0.10 2.96 4.59 -2.38 -0.01 2.95 16 10 C -0.12 -3.08 8.57 71.98 0.62 -2.47 16 11 C 0.54 17.66 6.47 87.66 0.57 18.22 16 12 O -0.58 -21.57 16.28 -3.02 -0.05 -21.62 16 13 N -0.61 -19.43 2.82 -810.08 -2.29 -21.71 16 14 C 0.11 3.14 6.12 87.17 0.53 3.68 16 15 C -0.08 -2.32 3.60 -10.13 -0.04 -2.36 16 16 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 17 C -0.12 -3.74 4.86 29.81 0.14 -3.60 16 18 C 0.14 5.46 6.50 86.17 0.56 6.02 16 19 N -0.60 -28.05 2.87 -703.90 -2.02 -30.07 16 20 C -0.26 -13.29 9.64 84.03 0.81 -12.48 16 21 H 0.06 2.98 7.85 -2.91 -0.02 2.96 16 22 C -0.03 -1.83 5.05 84.86 0.43 -1.40 16 23 N -0.93 -51.67 11.19 21.65 0.24 -51.43 16 24 Si 0.95 42.43 29.57 68.60 2.03 44.46 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 C 0.19 8.45 4.58 85.68 0.39 8.84 16 29 C -0.11 -3.69 2.76 -10.98 -0.03 -3.72 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 C 0.13 4.25 4.49 86.31 0.39 4.63 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 34 H 0.06 1.74 3.88 -2.39 -0.01 1.73 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.11 3.11 7.40 -2.91 -0.02 3.09 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.60 7.26 -2.38 -0.02 1.58 16 42 H 0.07 2.13 7.87 -2.39 -0.02 2.11 16 43 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.04 1.55 7.07 -2.39 -0.02 1.53 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.91 7.96 -2.39 -0.02 1.89 16 47 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 49 H 0.06 2.86 6.24 -2.39 -0.01 2.85 16 50 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.06 2.08 7.81 -2.38 -0.02 2.06 16 52 H 0.06 2.34 6.66 -2.39 -0.02 2.32 16 Total: -1.00 -62.04 395.86 4.47 -57.57 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.90 Total: 26.27 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.66 Total: -3.46 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -4.06 Total: -103.21 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -62.04 4.47 -57.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088210135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.384 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds