Wall clock time and date at job start Wed Apr 1 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 119.99907 * 2 1 4 4 C 1.38208 * 120.00109 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.97074 * 4 3 2 6 6 C 1.38215 * 119.99783 * 359.81894 * 5 4 3 7 7 C 1.38217 * 120.00069 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.00148 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.47278 * 4.60444 * 8 7 2 10 10 C 1.52998 * 109.47356 * 124.60191 * 8 7 2 11 11 C 1.50701 * 109.47202 * 244.60514 * 8 7 2 12 12 O 1.21288 * 119.99661 * 339.20224 * 11 8 7 13 13 N 1.34770 * 120.00462 * 159.19533 * 11 8 7 14 14 C 1.48100 * 125.74278 * 357.29337 * 13 11 8 15 15 C 1.53843 * 103.41380 * 204.42263 * 14 13 11 16 16 H 1.08996 * 109.07288 * 73.84647 * 15 14 13 17 17 C 1.49848 * 114.34687 * 195.56745 * 15 14 13 18 18 C 1.51338 * 114.52724 * 66.19856 * 17 15 14 19 19 N 1.44533 * 113.15373 * 35.13319 * 18 17 15 20 20 C 1.36944 * 117.26942 * 150.81708 * 19 18 17 21 21 H 1.07993 * 119.99888 * 208.67255 * 20 19 18 22 22 C 1.38808 * 119.99945 * 28.68002 * 20 19 18 23 23 N 1.31624 * 120.00144 * 11.16416 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 191.17334 * 22 20 19 25 25 H 1.48501 * 109.47405 * 89.99543 * 24 22 20 26 26 H 1.48508 * 109.47184 * 209.99576 * 24 22 20 27 27 H 1.48497 * 109.47129 * 329.98971 * 24 22 20 28 28 C 1.44409 * 125.46135 * 330.84202 * 19 18 17 29 29 C 1.52984 * 113.17835 * 34.66674 * 28 19 18 30 30 H 1.09005 * 113.44135 * 83.86903 * 29 28 19 31 31 C 1.47466 * 125.74654 * 177.28846 * 13 11 8 32 32 H 1.09000 * 109.47409 * 263.91280 * 1 2 3 33 33 H 1.08994 * 109.46991 * 23.92092 * 1 2 3 34 34 H 1.09005 * 109.46819 * 143.91493 * 1 2 3 35 35 H 1.08001 * 119.99925 * 359.97132 * 3 2 1 36 36 H 1.08004 * 120.00503 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00278 * 179.97438 * 5 4 3 38 38 H 1.08003 * 119.99780 * 180.22601 * 6 5 4 39 39 H 1.08999 * 109.46999 * 178.75901 * 10 8 7 40 40 H 1.09001 * 109.47375 * 298.76401 * 10 8 7 41 41 H 1.09001 * 109.46887 * 58.76332 * 10 8 7 42 42 H 1.09001 * 110.63018 * 322.90674 * 14 13 11 43 43 H 1.08997 * 110.63030 * 85.78051 * 14 13 11 44 44 H 1.09000 * 108.47461 * 187.50668 * 17 15 14 45 45 H 1.09000 * 108.47272 * 304.89662 * 17 15 14 46 46 H 1.09000 * 108.74585 * 156.07669 * 18 17 15 47 47 H 1.08995 * 108.74926 * 274.30508 * 18 17 15 48 48 H 0.97000 * 119.99642 * 180.02562 * 23 22 20 49 49 H 1.09001 * 108.73720 * 273.71504 * 28 19 18 50 50 H 1.08998 * 108.74359 * 155.62971 * 28 19 18 51 51 H 1.08995 * 110.03639 * 62.80982 * 31 13 11 52 52 H 1.08997 * 110.07921 * 301.37643 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0039 7 6 2.1981 -1.1970 -0.0005 8 6 1.4447 -2.5021 -0.0005 9 1 0.3758 -2.3046 -0.0826 10 6 1.8986 -3.3531 -1.1882 11 6 1.7217 -3.2421 1.2827 12 8 2.7095 -2.9767 1.9346 13 7 0.8719 -4.1986 1.7061 14 6 -0.3952 -4.5848 1.0438 15 6 -1.2245 -5.1938 2.1876 16 1 -1.5785 -4.3927 2.8364 17 6 -2.4054 -5.9972 1.7346 18 6 -2.0534 -7.2629 0.9834 19 7 -0.8532 -7.9005 1.4754 20 6 -0.7657 -9.2607 1.3427 21 1 -0.1839 -9.8357 2.0478 22 6 -1.4248 -9.9003 0.3018 23 7 -1.9478 -9.1945 -0.6783 24 14 -1.5696 -11.7626 0.2924 25 1 -2.8127 -12.1661 0.9975 26 1 -1.6162 -12.2484 -1.1103 27 1 -0.3950 -12.3539 0.9821 28 6 0.2613 -7.2232 2.0956 29 6 -0.1603 -6.0203 2.9415 30 1 -0.4669 -6.2874 3.9529 31 6 1.0472 -5.0368 2.9066 32 1 -0.3634 -0.1090 1.0219 33 1 -0.3633 0.9394 -0.4167 34 1 -0.3633 -0.8306 -0.6053 35 1 1.6583 2.1327 -0.0005 36 1 4.1205 2.1327 -0.0010 37 1 5.3517 0.0001 -0.0013 38 1 4.1207 -2.1322 0.0077 39 1 1.3697 -4.3060 -1.1756 40 1 1.6782 -2.8274 -2.1173 41 1 2.9715 -3.5321 -1.1178 42 1 -0.8953 -3.7088 0.6309 43 1 -0.2112 -5.3237 0.2640 44 1 -2.9954 -6.2680 2.6102 45 1 -3.0210 -5.3718 1.0879 46 1 -2.8833 -7.9642 1.0703 47 1 -1.9115 -7.0178 -0.0691 48 1 -2.4087 -9.6415 -1.4055 49 1 0.9416 -6.8816 1.3155 50 1 0.7908 -7.9314 2.7330 51 1 1.0471 -4.4133 3.8006 52 1 1.9814 -5.5945 2.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088210136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:51 Heat of formation + Delta-G solvation = 11.862428 kcal Electronic energy + Delta-G solvation = -31041.947951 eV Core-core repulsion = 27199.497527 eV Total energy + Delta-G solvation = -3842.450424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.67007 -39.59098 -38.10645 -35.46422 -34.33578 -32.73204 -32.65437 -31.49492 -30.38692 -29.38207 -27.50355 -26.95243 -25.67424 -24.77494 -23.91568 -22.22831 -21.83244 -21.47592 -20.71176 -18.86533 -18.12690 -17.14939 -16.61524 -16.47818 -15.80360 -15.57087 -15.36867 -14.92557 -14.47070 -14.32378 -13.87785 -13.84120 -13.68583 -13.60239 -13.25675 -13.15819 -13.01735 -12.98152 -12.66368 -12.61247 -12.33575 -12.10774 -12.00637 -11.88794 -11.70643 -11.62885 -11.26464 -10.96251 -10.91603 -10.76744 -10.71152 -10.65657 -10.20996 -10.15253 -9.95636 -9.74527 -9.55679 -9.45004 -8.80386 -8.63662 -8.48883 -8.39823 -6.65364 -5.74335 -3.27889 1.26507 1.38500 2.78154 3.11503 3.35693 3.42761 3.43718 3.74633 4.44823 4.50193 4.53655 4.73189 4.78979 4.85593 4.89933 5.01220 5.07183 5.15028 5.17525 5.18715 5.39712 5.44762 5.46585 5.47030 5.54652 5.58778 5.66592 5.69964 5.70353 5.72251 5.80335 5.86372 5.97250 5.99040 6.04780 6.07366 6.10140 6.19811 6.29187 6.37332 6.43222 6.45327 6.49368 6.53825 6.61729 6.70169 6.81834 6.91302 6.96909 7.41622 7.68827 7.78871 7.82359 8.31693 8.48284 9.28130 9.94392 10.29097 11.26845 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.002626 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.567414 B =10658.346076 C =10710.300129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.076 4.076 7 C -0.069 4.069 8 C -0.072 4.072 9 H 0.103 0.897 10 C -0.140 4.140 11 C 0.535 3.465 12 O -0.542 6.542 13 N -0.613 5.613 14 C 0.106 3.894 15 C -0.082 4.082 16 H 0.062 0.938 17 C -0.126 4.126 18 C 0.188 3.812 19 N -0.590 5.590 20 C -0.265 4.265 21 H 0.065 0.935 22 C 0.007 3.993 23 N -0.905 5.905 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.168 3.832 29 C -0.108 4.108 30 H 0.095 0.905 31 C 0.114 3.886 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.039 0.961 48 H 0.252 0.748 49 H 0.010 0.990 50 H 0.043 0.957 51 H 0.060 0.940 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 18.601 0.739 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.149 4.149 6 C -0.094 4.094 7 C -0.069 4.069 8 C -0.093 4.093 9 H 0.120 0.880 10 C -0.197 4.197 11 C 0.323 3.677 12 O -0.420 6.420 13 N -0.346 5.346 14 C -0.016 4.016 15 C -0.101 4.101 16 H 0.080 0.920 17 C -0.165 4.165 18 C 0.063 3.937 19 N -0.313 5.313 20 C -0.395 4.395 21 H 0.082 0.918 22 C -0.192 4.192 23 N -0.550 5.550 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.042 3.958 29 C -0.128 4.128 30 H 0.113 0.887 31 C -0.009 4.009 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.518 18.784 0.906 19.341 hybrid contribution -0.168 -1.007 0.003 1.021 sum 4.350 17.777 0.909 18.324 Atomic orbital electron populations 1.20876 0.91429 1.02801 1.02487 1.19740 0.95877 0.92590 0.99792 1.20921 0.94263 0.97083 1.02216 1.21089 0.94293 0.97903 1.00342 1.21101 0.99774 0.92488 1.01504 1.20976 0.93499 0.98196 0.96708 1.19222 0.93710 0.92687 1.01300 1.20310 1.01736 0.93117 0.94165 0.87959 1.21754 1.02324 0.99681 0.95943 1.20041 0.82265 0.79015 0.86404 1.90682 1.28035 1.65874 1.57369 1.48725 1.22850 1.35869 1.27201 1.22414 0.83248 0.99307 0.96649 1.21146 0.95505 0.97355 0.96111 0.91975 1.20993 0.95895 0.98874 1.00765 1.19861 0.88708 0.89889 0.95259 1.42778 1.14485 1.04348 1.69734 1.19299 1.30167 0.82653 1.07409 0.91774 1.25103 1.01004 0.97907 0.95177 1.70057 1.40642 1.33816 1.10455 0.86274 0.78002 0.85577 0.76791 1.21466 1.21723 1.20479 1.20303 0.90187 0.91570 0.93777 1.22836 0.93609 0.96092 1.00302 0.88694 1.22373 0.99222 0.92194 0.87132 0.91153 0.91462 0.91075 0.86287 0.86382 0.86279 0.85931 0.91099 0.91220 0.91833 0.91253 0.89609 0.92885 0.92595 0.92815 0.94338 0.93731 0.97236 0.93904 0.92142 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.26 36.01 0.33 -0.75 16 2 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.13 -1.32 9.68 -39.59 -0.38 -1.71 16 4 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 5 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 6 C -0.08 -0.99 7.91 -39.58 -0.31 -1.30 16 7 C -0.07 -0.88 4.56 -104.63 -0.48 -1.36 16 8 C -0.07 -0.91 2.16 -92.93 -0.20 -1.11 16 9 H 0.10 1.14 4.29 -51.93 -0.22 0.91 16 10 C -0.14 -1.64 8.96 37.16 0.33 -1.31 16 11 C 0.53 8.34 6.98 -10.99 -0.08 8.26 16 12 O -0.54 -10.05 15.29 5.55 0.08 -9.96 16 13 N -0.61 -9.32 3.33 -169.36 -0.56 -9.88 16 14 C 0.11 1.54 5.37 -2.72 -0.01 1.53 16 15 C -0.08 -1.23 2.69 -91.01 -0.25 -1.48 16 16 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 17 C -0.13 -2.13 5.45 -29.13 -0.16 -2.29 16 18 C 0.19 4.19 4.36 -5.93 -0.03 4.16 16 19 N -0.59 -13.95 3.17 -177.44 -0.56 -14.51 16 20 C -0.27 -7.04 9.28 -15.06 -0.14 -7.18 16 21 H 0.06 1.69 7.69 -52.49 -0.40 1.29 16 22 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 23 N -0.91 -25.18 10.65 55.49 0.59 -24.59 16 24 Si 0.90 21.28 29.57 -169.99 -5.03 16.25 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.17 3.36 4.95 -5.17 -0.03 3.34 16 29 C -0.11 -1.73 3.98 -88.41 -0.35 -2.08 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 C 0.11 1.73 6.01 -2.03 -0.01 1.72 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 8.04 -51.93 -0.42 0.08 16 34 H 0.07 0.60 6.37 -51.93 -0.33 0.27 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.64 7.03 -52.48 -0.37 1.27 16 39 H 0.07 0.89 7.80 -51.93 -0.40 0.48 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 7.11 -51.93 -0.37 0.40 16 42 H 0.07 0.84 6.97 -51.93 -0.36 0.48 16 43 H 0.09 1.46 6.98 -51.93 -0.36 1.09 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 1.35 7.02 -51.93 -0.36 0.98 16 47 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 48 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.01 0.21 6.92 -51.93 -0.36 -0.15 16 50 H 0.04 0.86 7.74 -51.93 -0.40 0.46 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -30.56 394.27 -11.30 -41.86 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.51 Total: 1.37 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.26 Total: -6.47 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.54 Total: -48.98 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.56 -11.30 -41.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088210136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.719 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds