Wall clock time and date at job start Wed Apr 1 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 119.99907 * 2 1 4 4 C 1.38208 * 120.00109 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.97074 * 4 3 2 6 6 C 1.38215 * 119.99783 * 359.81894 * 5 4 3 7 7 C 1.38217 * 120.00069 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.00148 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.47278 * 4.60444 * 8 7 2 10 10 C 1.52998 * 109.47356 * 124.60191 * 8 7 2 11 11 C 1.50701 * 109.47202 * 244.60514 * 8 7 2 12 12 O 1.21288 * 119.99661 * 339.20224 * 11 8 7 13 13 N 1.34770 * 120.00462 * 159.19533 * 11 8 7 14 14 C 1.48100 * 125.74278 * 357.29337 * 13 11 8 15 15 C 1.53843 * 103.41380 * 204.42263 * 14 13 11 16 16 H 1.08996 * 109.07288 * 73.84647 * 15 14 13 17 17 C 1.49848 * 114.34687 * 195.56745 * 15 14 13 18 18 C 1.51338 * 114.52724 * 66.19856 * 17 15 14 19 19 N 1.44533 * 113.15373 * 35.13319 * 18 17 15 20 20 C 1.36944 * 117.26942 * 150.81708 * 19 18 17 21 21 H 1.07993 * 119.99888 * 208.67255 * 20 19 18 22 22 C 1.38808 * 119.99945 * 28.68002 * 20 19 18 23 23 N 1.31624 * 120.00144 * 11.16416 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 191.17334 * 22 20 19 25 25 H 1.48501 * 109.47405 * 89.99543 * 24 22 20 26 26 H 1.48508 * 109.47184 * 209.99576 * 24 22 20 27 27 H 1.48497 * 109.47129 * 329.98971 * 24 22 20 28 28 C 1.44409 * 125.46135 * 330.84202 * 19 18 17 29 29 C 1.52984 * 113.17835 * 34.66674 * 28 19 18 30 30 H 1.09005 * 113.44135 * 83.86903 * 29 28 19 31 31 C 1.47466 * 125.74654 * 177.28846 * 13 11 8 32 32 H 1.09000 * 109.47409 * 263.91280 * 1 2 3 33 33 H 1.08994 * 109.46991 * 23.92092 * 1 2 3 34 34 H 1.09005 * 109.46819 * 143.91493 * 1 2 3 35 35 H 1.08001 * 119.99925 * 359.97132 * 3 2 1 36 36 H 1.08004 * 120.00503 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00278 * 179.97438 * 5 4 3 38 38 H 1.08003 * 119.99780 * 180.22601 * 6 5 4 39 39 H 1.08999 * 109.46999 * 178.75901 * 10 8 7 40 40 H 1.09001 * 109.47375 * 298.76401 * 10 8 7 41 41 H 1.09001 * 109.46887 * 58.76332 * 10 8 7 42 42 H 1.09001 * 110.63018 * 322.90674 * 14 13 11 43 43 H 1.08997 * 110.63030 * 85.78051 * 14 13 11 44 44 H 1.09000 * 108.47461 * 187.50668 * 17 15 14 45 45 H 1.09000 * 108.47272 * 304.89662 * 17 15 14 46 46 H 1.09000 * 108.74585 * 156.07669 * 18 17 15 47 47 H 1.08995 * 108.74926 * 274.30508 * 18 17 15 48 48 H 0.97000 * 119.99642 * 180.02562 * 23 22 20 49 49 H 1.09001 * 108.73720 * 273.71504 * 28 19 18 50 50 H 1.08998 * 108.74359 * 155.62971 * 28 19 18 51 51 H 1.08995 * 110.03639 * 62.80982 * 31 13 11 52 52 H 1.08997 * 110.07921 * 301.37643 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0039 7 6 2.1981 -1.1970 -0.0005 8 6 1.4447 -2.5021 -0.0005 9 1 0.3758 -2.3046 -0.0826 10 6 1.8986 -3.3531 -1.1882 11 6 1.7217 -3.2421 1.2827 12 8 2.7095 -2.9767 1.9346 13 7 0.8719 -4.1986 1.7061 14 6 -0.3952 -4.5848 1.0438 15 6 -1.2245 -5.1938 2.1876 16 1 -1.5785 -4.3927 2.8364 17 6 -2.4054 -5.9972 1.7346 18 6 -2.0534 -7.2629 0.9834 19 7 -0.8532 -7.9005 1.4754 20 6 -0.7657 -9.2607 1.3427 21 1 -0.1839 -9.8357 2.0478 22 6 -1.4248 -9.9003 0.3018 23 7 -1.9478 -9.1945 -0.6783 24 14 -1.5696 -11.7626 0.2924 25 1 -2.8127 -12.1661 0.9975 26 1 -1.6162 -12.2484 -1.1103 27 1 -0.3950 -12.3539 0.9821 28 6 0.2613 -7.2232 2.0956 29 6 -0.1603 -6.0203 2.9415 30 1 -0.4669 -6.2874 3.9529 31 6 1.0472 -5.0368 2.9066 32 1 -0.3634 -0.1090 1.0219 33 1 -0.3633 0.9394 -0.4167 34 1 -0.3633 -0.8306 -0.6053 35 1 1.6583 2.1327 -0.0005 36 1 4.1205 2.1327 -0.0010 37 1 5.3517 0.0001 -0.0013 38 1 4.1207 -2.1322 0.0077 39 1 1.3697 -4.3060 -1.1756 40 1 1.6782 -2.8274 -2.1173 41 1 2.9715 -3.5321 -1.1178 42 1 -0.8953 -3.7088 0.6309 43 1 -0.2112 -5.3237 0.2640 44 1 -2.9954 -6.2680 2.6102 45 1 -3.0210 -5.3718 1.0879 46 1 -2.8833 -7.9642 1.0703 47 1 -1.9115 -7.0178 -0.0691 48 1 -2.4087 -9.6415 -1.4055 49 1 0.9416 -6.8816 1.3155 50 1 0.7908 -7.9314 2.7330 51 1 1.0471 -4.4133 3.8006 52 1 1.9814 -5.5945 2.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088210136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:50 Heat of formation + Delta-G solvation = -3.257952 kcal Electronic energy + Delta-G solvation = -31042.603620 eV Core-core repulsion = 27199.497527 eV Total energy + Delta-G solvation = -3843.106093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.84159 -40.67204 -39.33462 -37.10820 -35.33096 -34.26018 -33.51548 -33.05458 -31.98909 -30.34696 -28.88536 -27.70116 -27.24219 -26.20961 -25.15045 -23.50351 -23.34445 -22.54730 -21.71981 -20.00590 -19.66095 -18.49572 -18.17416 -17.38522 -17.11530 -16.93855 -16.56121 -16.24763 -15.81180 -15.49899 -15.36628 -15.20168 -14.86560 -14.74778 -14.48557 -14.42490 -14.27150 -13.98168 -13.92502 -13.63285 -13.37828 -13.32167 -13.16241 -12.95674 -12.93402 -12.75264 -12.66209 -12.55832 -12.42035 -12.26576 -11.96600 -11.87072 -11.80815 -11.58083 -11.51914 -11.34733 -10.99150 -10.77687 -10.48661 -9.68600 -9.65283 -9.46878 -8.62703 -7.77884 -5.35137 0.41632 0.53708 1.46526 1.47474 1.55809 1.57081 1.95906 2.51151 2.87553 3.30430 3.35392 3.55184 3.57775 3.69626 3.81310 3.94290 4.00035 4.05780 4.11200 4.18574 4.23400 4.27809 4.39814 4.47392 4.47862 4.54237 4.60591 4.63729 4.68548 4.69862 4.78645 4.82667 4.84275 4.88293 4.91679 4.97114 5.03591 5.09522 5.11263 5.14715 5.20847 5.25633 5.33226 5.36427 5.39636 5.57827 5.61409 5.65350 5.72458 5.75685 5.97559 6.15515 6.43478 6.49051 7.10289 7.25102 8.06480 8.29243 9.19010 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.002626 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.567414 B =10658.346076 C =10710.300129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.098 4.098 7 C -0.088 4.088 8 C -0.064 4.064 9 H 0.122 0.878 10 C -0.135 4.135 11 C 0.531 3.469 12 O -0.576 6.576 13 N -0.613 5.613 14 C 0.111 3.889 15 C -0.078 4.078 16 H 0.097 0.903 17 C -0.116 4.116 18 C 0.200 3.800 19 N -0.602 5.602 20 C -0.279 4.279 21 H 0.061 0.939 22 C -0.043 4.043 23 N -0.929 5.929 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.170 3.830 29 C -0.098 4.098 30 H 0.113 0.887 31 C 0.117 3.883 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.017 0.983 47 H 0.007 0.993 48 H 0.248 0.752 49 H -0.009 1.009 50 H 0.035 0.965 51 H 0.076 0.924 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 21.080 1.462 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.161 4.161 6 C -0.116 4.116 7 C -0.089 4.089 8 C -0.084 4.084 9 H 0.139 0.861 10 C -0.193 4.193 11 C 0.320 3.680 12 O -0.456 6.456 13 N -0.346 5.346 14 C -0.011 4.011 15 C -0.097 4.097 16 H 0.115 0.885 17 C -0.154 4.154 18 C 0.075 3.925 19 N -0.326 5.326 20 C -0.409 4.409 21 H 0.078 0.922 22 C -0.239 4.239 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.198 1.198 28 C 0.044 3.956 29 C -0.117 4.117 30 H 0.131 0.869 31 C -0.006 4.006 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.036 0.964 47 H 0.025 0.975 48 H 0.058 0.942 49 H 0.009 0.991 50 H 0.053 0.947 51 H 0.094 0.906 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.483 21.267 1.644 21.613 hybrid contribution 0.244 -1.776 -0.234 1.808 sum 3.727 19.491 1.410 19.894 Atomic orbital electron populations 1.20932 0.89681 1.04143 1.02814 1.20074 0.97306 0.92303 0.99146 1.21311 0.94525 0.97870 1.01156 1.21448 0.94691 0.98456 0.99085 1.21341 1.00687 0.92485 1.01546 1.21009 0.94087 0.98260 0.98283 1.19322 0.93679 0.93249 1.02600 1.20295 1.02871 0.92876 0.92393 0.86051 1.21721 1.01475 0.99311 0.96772 1.20614 0.81581 0.78814 0.86958 1.90661 1.29351 1.66989 1.58580 1.48803 1.23114 1.35581 1.27120 1.22369 0.83032 0.99888 0.95799 1.21156 0.94447 0.97641 0.96470 0.88524 1.20813 0.97111 0.96593 1.00914 1.19587 0.86963 0.91407 0.94578 1.43019 1.15844 1.03859 1.69847 1.19599 1.29762 0.84382 1.07200 0.92154 1.25795 1.01256 1.01743 0.95086 1.70227 1.41383 1.35015 1.10870 0.85336 0.78059 0.81046 0.76391 1.21052 1.22084 1.19825 1.20335 0.88928 0.92876 0.93449 1.22728 0.94425 0.94186 1.00408 0.86877 1.22306 0.98192 0.92183 0.87950 0.91014 0.89537 0.90566 0.83667 0.83746 0.84984 0.87709 0.92259 0.89301 0.92900 0.87988 0.92660 0.91850 0.90130 0.96446 0.97534 0.94230 0.99111 0.94685 0.90585 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.26 71.24 0.66 -1.11 16 2 C -0.09 -1.81 5.88 -19.86 -0.12 -1.93 16 3 C -0.13 -2.37 9.68 22.27 0.22 -2.15 16 4 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 5 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 6 C -0.10 -2.58 7.91 22.27 0.18 -2.41 16 7 C -0.09 -2.18 4.56 -19.87 -0.09 -2.27 16 8 C -0.06 -1.55 2.16 -12.29 -0.03 -1.57 16 9 H 0.12 2.42 4.29 -2.38 -0.01 2.41 16 10 C -0.14 -3.20 8.96 71.98 0.65 -2.56 16 11 C 0.53 16.33 6.98 87.66 0.61 16.94 16 12 O -0.58 -21.56 15.29 -3.05 -0.05 -21.61 16 13 N -0.61 -18.01 3.33 -808.13 -2.69 -20.70 16 14 C 0.11 3.04 5.37 86.36 0.46 3.50 16 15 C -0.08 -2.14 2.69 -11.05 -0.03 -2.17 16 16 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.12 -3.67 5.45 29.04 0.16 -3.51 16 18 C 0.20 9.04 4.36 86.20 0.38 9.42 16 19 N -0.60 -29.09 3.17 -715.30 -2.27 -31.36 16 20 C -0.28 -15.15 9.28 84.03 0.78 -14.37 16 21 H 0.06 3.25 7.69 -2.91 -0.02 3.23 16 22 C -0.04 -2.35 4.96 84.86 0.42 -1.93 16 23 N -0.93 -53.32 10.65 21.65 0.23 -53.09 16 24 Si 0.96 44.52 29.57 68.60 2.03 46.55 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.17 6.90 4.95 86.76 0.43 7.33 16 29 C -0.10 -2.97 3.98 -9.36 -0.04 -3.01 16 30 H 0.11 3.08 8.14 -2.38 -0.02 3.07 16 31 C 0.12 3.44 6.01 87.15 0.52 3.96 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.09 0.94 8.04 -2.39 -0.02 0.92 16 34 H 0.08 1.04 6.37 -2.38 -0.02 1.02 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.10 3.01 7.03 -2.91 -0.02 2.99 16 39 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.34 7.11 -2.39 -0.02 1.32 16 42 H 0.10 2.14 6.97 -2.39 -0.02 2.12 16 43 H 0.06 1.89 6.98 -2.39 -0.02 1.87 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.02 0.89 7.02 -2.39 -0.02 0.87 16 47 H 0.01 0.34 7.20 -2.39 -0.02 0.33 16 48 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 49 H -0.01 -0.39 6.92 -2.39 -0.02 -0.40 16 50 H 0.03 1.44 7.74 -2.39 -0.02 1.43 16 51 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.05 1.77 7.74 -2.39 -0.02 1.75 16 Total: -1.00 -68.90 394.27 3.76 -65.14 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.90 Total: 17.79 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 5.61 Total: -2.71 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.73 Total: -105.15 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.90 3.76 -65.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088210136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.883 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds