Wall clock time and date at job start Wed Apr 1 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47194 * 2 1 4 4 C 1.38254 * 119.99849 * 264.97574 * 3 2 1 5 5 C 1.38212 * 119.99573 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00492 * 0.02570 * 5 4 3 7 7 C 1.38213 * 119.99614 * 359.76936 * 6 5 4 8 8 C 1.38205 * 119.99788 * 85.00429 * 3 2 1 9 9 C 1.50700 * 120.00235 * 359.97438 * 8 3 2 10 10 H 1.08999 * 115.54974 * 334.33128 * 9 8 3 11 11 C 1.53000 * 117.51621 * 188.63231 * 9 8 3 12 12 C 1.53001 * 60.00105 * 252.51566 * 11 9 8 13 13 H 1.08994 * 117.51542 * 107.48000 * 12 11 9 14 14 C 1.50695 * 117.50091 * 252.51523 * 12 11 9 15 15 O 1.21274 * 120.00413 * 68.89021 * 14 12 11 16 16 N 1.34784 * 119.99635 * 248.61979 * 14 12 11 17 17 C 1.46499 * 119.99971 * 179.97438 * 16 14 12 18 18 H 1.09003 * 110.64167 * 328.14136 * 17 16 14 19 19 C 1.55157 * 110.72087 * 91.47276 * 17 16 14 20 20 C 1.54911 * 101.57886 * 153.86619 * 19 17 16 21 21 N 1.47424 * 104.83431 * 322.99086 * 20 19 17 22 22 C 1.36932 * 125.65090 * 204.15931 * 21 20 19 23 23 H 1.08003 * 120.00360 * 179.97438 * 22 21 20 24 24 C 1.38813 * 120.00218 * 359.96926 * 22 21 20 25 25 N 1.31626 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00376 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47177 * 89.99756 * 26 24 22 28 28 H 1.48504 * 109.47004 * 209.99823 * 26 24 22 29 29 H 1.48504 * 109.46980 * 329.99808 * 26 24 22 30 30 C 1.47026 * 108.69961 * 24.13053 * 21 20 19 31 31 H 1.08995 * 110.01329 * 239.44339 * 30 21 20 32 32 C 1.53004 * 109.87855 * 118.35738 * 30 21 20 33 33 H 1.09005 * 109.47246 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46943 * 299.99829 * 1 2 3 35 35 H 1.08994 * 109.47127 * 59.99708 * 1 2 3 36 36 H 1.09002 * 109.47382 * 239.99907 * 2 1 3 37 37 H 1.09003 * 109.47353 * 120.00163 * 2 1 3 38 38 H 1.07998 * 119.99891 * 0.02562 * 4 3 2 39 39 H 1.08006 * 119.99948 * 180.02562 * 5 4 3 40 40 H 1.08000 * 119.99954 * 179.97438 * 6 5 4 41 41 H 1.07997 * 119.99974 * 180.25555 * 7 6 5 42 42 H 1.09006 * 117.49636 * 145.02804 * 11 9 8 43 43 H 1.08995 * 117.50274 * 0.02562 * 11 9 8 44 44 H 0.96999 * 120.00044 * 0.02562 * 16 14 12 45 45 H 1.08990 * 111.00809 * 271.94162 * 19 17 16 46 46 H 1.09002 * 110.99865 * 35.79508 * 19 17 16 47 47 H 1.09002 * 110.36368 * 204.15416 * 20 19 17 48 48 H 1.08993 * 110.45960 * 81.88229 * 20 19 17 49 49 H 0.96995 * 120.00459 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.46999 * 302.18393 * 32 30 21 51 51 H 1.08996 * 109.47295 * 62.19075 * 32 30 21 52 52 H 1.09002 * 109.46892 * 182.18905 * 32 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8218 3.3408 -1.1927 6 6 2.9534 4.0276 0.0000 7 6 2.6202 3.4124 1.1920 8 6 2.1644 2.1070 1.1924 9 6 1.8055 1.4347 2.4925 10 1 1.0739 0.6301 2.4193 11 6 1.7784 2.3018 3.7528 12 6 2.9092 1.2927 3.5426 13 1 3.8947 1.6856 3.2932 14 6 2.9014 0.0511 4.3966 15 8 2.0443 -0.7913 4.2341 16 7 3.8503 -0.1257 5.3374 17 6 3.8424 -1.3324 6.1680 18 1 2.8222 -1.6793 6.3321 19 6 4.7085 -2.4474 5.5245 20 6 5.1219 -3.2757 6.7665 21 7 5.3352 -2.2787 7.8313 22 6 6.1294 -2.4462 8.9341 23 1 6.2204 -1.6515 9.6598 24 6 6.8177 -3.6374 9.1193 25 7 6.7064 -4.6061 8.2352 26 14 7.9017 -3.8656 10.6234 27 1 7.0984 -4.4462 11.7291 28 1 9.0222 -4.7820 10.2914 29 1 8.4465 -2.5501 11.0451 30 6 4.5543 -1.0744 7.5126 31 1 5.2166 -0.2135 7.4221 32 6 3.5184 -0.8206 8.6096 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 1.8934 -0.5139 0.8900 38 1 2.2584 1.5013 -2.1244 39 1 3.0787 3.8228 -2.1245 40 1 3.3134 5.0458 0.0000 41 1 2.7190 3.9501 2.1233 42 1 1.0289 2.0676 4.5088 43 1 2.0198 3.3589 3.6417 44 1 4.5379 0.5465 5.4650 45 1 4.1197 -3.0488 4.8320 46 1 5.5822 -2.0255 5.0277 47 1 6.0441 -3.8221 6.5682 48 1 4.3259 -3.9656 7.0466 49 1 7.1870 -5.4386 8.3647 50 1 2.8711 -1.6922 8.7067 51 1 4.0282 -0.6392 9.5558 52 1 2.9179 0.0506 8.3477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088822943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:03 Heat of formation + Delta-G solvation = 27.792896 kcal Electronic energy + Delta-G solvation = -29611.180136 eV Core-core repulsion = 25769.420509 eV Total energy + Delta-G solvation = -3841.759627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54286 -39.47518 -37.80439 -36.27940 -34.40886 -33.98807 -32.01653 -30.82552 -30.36734 -29.56040 -28.67850 -25.62485 -24.32470 -24.03149 -23.99442 -23.31626 -21.28579 -20.57656 -20.18725 -20.13397 -19.38670 -17.54339 -16.78735 -16.67185 -16.03348 -15.63656 -15.30231 -14.84888 -14.75636 -14.27714 -14.09986 -13.99576 -13.91337 -13.70326 -13.41748 -13.35792 -12.85351 -12.69369 -12.43387 -12.14531 -12.06952 -11.99317 -11.94060 -11.61374 -11.56917 -11.15129 -11.09386 -11.05143 -10.87669 -10.84004 -10.73875 -10.61399 -10.54059 -10.41632 -10.10339 -9.75985 -9.67274 -9.54940 -9.01360 -8.70045 -8.68450 -8.59066 -6.88462 -5.66313 -3.09250 1.05313 1.14984 2.60532 3.23483 3.38836 3.43391 3.45487 3.46882 3.87537 4.34294 4.47290 4.51477 4.57291 4.64091 4.71705 4.76816 4.93978 4.96899 5.04554 5.19529 5.27038 5.29041 5.31721 5.37878 5.41634 5.47123 5.55140 5.62552 5.66471 5.72760 5.77979 5.80179 5.82959 5.85756 5.95709 6.08699 6.12192 6.25213 6.27115 6.29783 6.31237 6.35483 6.47640 6.53431 6.61137 6.71358 6.76612 6.86764 7.11403 7.51314 7.61572 7.75140 7.84562 8.33640 8.42844 9.19675 9.80619 10.44580 11.37011 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.002092 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.974446 B =13380.577739 C =13587.064299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.086 4.086 10 H 0.130 0.870 11 C -0.146 4.146 12 C -0.175 4.175 13 H 0.123 0.877 14 C 0.541 3.459 15 O -0.543 6.543 16 N -0.710 5.710 17 C 0.135 3.865 18 H 0.093 0.907 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.155 3.845 31 H 0.036 0.964 32 C -0.155 4.155 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.399 0.601 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.014 0.986 49 H 0.252 0.748 50 H 0.051 0.949 51 H 0.054 0.946 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 16.882 -17.504 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.105 4.105 10 H 0.148 0.852 11 C -0.183 4.183 12 C -0.196 4.196 13 H 0.141 0.859 14 C 0.327 3.673 15 O -0.421 6.421 16 N -0.360 5.360 17 C 0.030 3.970 18 H 0.111 0.889 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.047 3.953 31 H 0.053 0.947 32 C -0.214 4.214 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.233 0.767 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.032 0.968 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.257 16.082 -17.498 25.885 hybrid contribution 0.997 0.244 0.882 1.354 sum -9.260 16.326 -16.616 25.067 Atomic orbital electron populations 1.21736 0.94588 1.01962 1.01988 1.20614 0.96364 0.92492 1.03432 1.19747 0.98406 0.96273 0.92355 1.21030 0.99921 0.95172 0.97413 1.21125 0.99988 0.94828 0.98061 1.21085 1.00657 0.99928 0.92520 1.21057 0.99599 0.94502 0.98365 1.18988 0.99454 0.93693 0.92823 1.21124 1.00525 1.01760 0.87056 0.85231 1.23123 0.99323 0.96351 0.99515 1.22367 0.96868 0.98043 1.02328 0.85859 1.19509 0.81232 0.86476 0.80076 1.90683 1.37884 1.44592 1.68906 1.45994 1.30213 1.23432 1.36325 1.22166 1.00445 0.84085 0.90280 0.88882 1.23391 0.98458 0.97588 0.99795 1.21947 1.01621 0.90254 0.83422 1.44487 1.51765 1.11492 1.24283 1.19020 1.18430 0.99411 0.97961 0.90468 1.24795 1.00754 0.96227 0.98861 1.69796 1.46238 1.05740 1.35162 0.86081 0.79904 0.77499 0.82047 1.21646 1.21670 1.20725 1.20995 0.91700 0.91616 0.91013 0.94689 1.22240 0.99166 0.99822 1.00219 0.92191 0.92354 0.92822 0.91137 0.90065 0.86107 0.86230 0.86161 0.85858 0.87701 0.87532 0.76725 0.92054 0.92004 0.87347 0.96758 0.93688 0.92949 0.92734 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.74 37.16 0.36 -0.88 16 2 C -0.09 -0.86 5.38 -27.88 -0.15 -1.01 16 3 C -0.07 -0.67 5.13 -104.63 -0.54 -1.20 16 4 C -0.12 -1.02 9.68 -39.59 -0.38 -1.41 16 5 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 6 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 7 C -0.12 -1.02 9.30 -39.58 -0.37 -1.39 16 8 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 9 C -0.09 -0.90 4.66 -91.77 -0.43 -1.33 16 10 H 0.13 1.55 5.47 -51.93 -0.28 1.26 16 11 C -0.15 -1.32 9.56 -26.73 -0.26 -1.57 16 12 C -0.17 -1.89 5.83 -91.77 -0.53 -2.43 16 13 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.54 7.92 7.61 -10.98 -0.08 7.84 16 15 O -0.54 -9.88 15.90 5.56 0.09 -9.79 16 16 N -0.71 -10.39 5.18 -52.04 -0.27 -10.66 16 17 C 0.13 2.45 2.84 -66.10 -0.19 2.26 16 18 H 0.09 1.83 7.26 -51.93 -0.38 1.45 16 19 C -0.15 -3.04 6.77 -24.58 -0.17 -3.21 16 20 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 21 N -0.60 -14.78 3.13 -162.58 -0.51 -15.29 16 22 C -0.22 -5.96 9.89 -15.06 -0.15 -6.11 16 23 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 26 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.15 3.10 3.48 -66.95 -0.23 2.86 16 31 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 32 C -0.15 -2.88 9.13 37.16 0.34 -2.54 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.08 0.90 6.94 -51.93 -0.36 0.54 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.87 6.02 -52.49 -0.32 0.55 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.11 0.73 6.17 -51.93 -0.32 0.41 16 44 H 0.40 4.88 8.37 -40.82 -0.34 4.54 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 52 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -31.32 411.93 -11.75 -43.07 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.53 Total: 6.38 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.27 Total: -10.66 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.22 Total: -52.02 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.32 -11.75 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088822943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.859 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds