Wall clock time and date at job start Wed Apr 1 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.35906 * 2 1 4 4 C 1.54844 * 109.36058 * 119.72298 * 2 1 3 5 5 C 1.50132 * 110.81120 * 81.33906 * 4 2 1 6 6 H 1.08998 * 110.25030 * 338.71396 * 5 4 2 7 7 N 1.46499 * 110.24750 * 216.79942 * 5 4 2 8 8 C 1.34782 * 119.99961 * 155.00041 * 7 5 4 9 9 O 1.21280 * 119.99882 * 0.02562 * 8 7 5 10 10 C 1.50690 * 119.99984 * 179.97438 * 8 7 5 11 11 F 1.39900 * 109.54584 * 55.00186 * 10 8 7 12 12 C 1.53175 * 109.54823 * 294.82646 * 10 8 7 13 13 C 1.53099 * 109.16286 * 183.24301 * 12 10 8 14 14 O 1.42908 * 109.48520 * 57.46921 * 13 12 10 15 15 C 1.42903 * 114.10123 * 298.89050 * 14 13 12 16 16 C 1.53094 * 109.41136 * 61.15760 * 15 14 13 17 17 C 1.52522 * 105.41233 * 97.68481 * 5 4 2 18 18 C 1.46240 * 114.27934 * 270.59112 * 17 5 4 19 19 N 1.50167 * 107.53289 * 58.40951 * 18 17 5 20 20 C 1.36934 * 120.53744 * 109.59364 * 19 18 17 21 21 H 1.07999 * 120.00129 * 320.09337 * 20 19 18 22 22 C 1.38811 * 119.99684 * 140.08514 * 20 19 18 23 23 N 1.31622 * 119.99982 * 156.58356 * 22 20 19 24 24 Si 1.86797 * 120.00345 * 336.57859 * 22 20 19 25 25 H 1.48506 * 109.46946 * 95.56954 * 24 22 20 26 26 H 1.48498 * 109.47467 * 215.56864 * 24 22 20 27 27 H 1.48503 * 109.47424 * 335.57286 * 24 22 20 28 28 C 1.43335 * 118.79540 * 289.61855 * 19 18 17 29 29 H 1.09006 * 109.47102 * 59.99966 * 1 2 3 30 30 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47419 * 300.00379 * 1 2 3 32 32 H 1.09001 * 109.46870 * 59.99785 * 3 2 1 33 33 H 1.09001 * 109.47026 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46967 * 300.00154 * 3 2 1 35 35 H 1.08996 * 109.21128 * 201.68248 * 4 2 1 36 36 H 1.09000 * 109.20929 * 320.99711 * 4 2 1 37 37 H 0.97002 * 119.99998 * 335.00459 * 7 5 4 38 38 H 1.09010 * 109.51703 * 303.06129 * 12 10 8 39 39 H 1.08998 * 109.52711 * 63.24095 * 12 10 8 40 40 H 1.09004 * 109.40396 * 297.48974 * 13 12 10 41 41 H 1.09000 * 109.49370 * 177.50453 * 13 12 10 42 42 H 1.09003 * 109.47538 * 301.17782 * 15 14 13 43 43 H 1.08994 * 109.48917 * 181.14554 * 15 14 13 44 44 H 1.09000 * 109.51904 * 182.48741 * 16 15 14 45 45 H 1.08994 * 109.51914 * 62.29977 * 16 15 14 46 46 H 1.09000 * 108.52196 * 31.83464 * 17 5 4 47 47 H 1.09001 * 108.52425 * 149.50177 * 17 5 4 48 48 H 1.08998 * 109.84367 * 177.92094 * 18 17 5 49 49 H 1.08997 * 109.84368 * 298.83530 * 18 17 5 50 50 H 0.97001 * 120.00518 * 179.97438 * 23 22 20 51 51 H 1.09003 * 108.25022 * 329.92654 * 28 19 18 52 52 H 1.08997 * 108.00555 * 213.39355 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0371 1.4436 0.0000 4 6 2.0433 -0.7243 1.2687 5 6 2.0207 -2.2134 1.0787 6 1 1.3254 -2.4817 0.2833 7 7 1.6418 -2.8782 2.3279 8 6 1.0766 -4.1014 2.2958 9 8 0.8821 -4.6518 1.2328 10 6 0.6874 -4.7855 3.5808 11 9 -0.1587 -3.9501 4.3181 12 6 1.9451 -5.0921 4.3996 13 6 1.5473 -5.8585 5.6639 14 8 0.8511 -7.0519 5.2987 15 6 -0.3585 -6.8230 4.5731 16 6 -0.0369 -6.0974 3.2639 17 6 3.4446 -2.5935 0.6857 18 6 3.6999 -2.5614 -0.7539 19 7 3.4056 -1.1696 -1.2347 20 6 4.4211 -0.3415 -1.6322 21 1 5.3513 -0.3260 -1.0836 22 6 4.2550 0.4779 -2.7402 23 7 4.9814 1.5682 -2.8673 24 14 3.0008 0.0333 -4.0512 25 1 1.7300 0.7542 -3.7851 26 1 3.5208 0.4232 -5.3864 27 1 2.7543 -1.4309 -4.0242 28 6 2.0435 -0.7246 -1.2691 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6727 1.9567 0.8900 33 1 3.1272 1.4457 0.0005 34 1 1.6728 1.9566 -0.8900 35 1 3.0645 -0.4046 1.4757 36 1 1.4075 -0.4610 2.1140 37 1 1.7976 -2.4381 3.1782 38 1 2.6269 -5.7009 3.8055 39 1 2.4359 -4.1592 4.6767 40 1 0.8991 -5.2329 6.2776 41 1 2.4427 -6.1182 6.2286 42 1 -1.0315 -6.2101 5.1726 43 1 -0.8360 -7.7775 4.3519 44 1 -0.9625 -5.8827 2.7297 45 1 0.6035 -6.7271 2.6464 46 1 4.1342 -1.9057 1.1750 47 1 3.6467 -3.6012 1.0486 48 1 4.7434 -2.8079 -0.9502 49 1 3.0498 -3.2744 -1.2610 50 1 4.8656 2.1407 -3.6418 51 1 1.4059 -1.5906 -1.4472 52 1 1.9316 -0.0473 -2.1158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089403885.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:15 Heat of formation + Delta-G solvation = -130.772458 kcal Electronic energy + Delta-G solvation = -32870.294665 eV Core-core repulsion = 28590.889903 eV Total energy + Delta-G solvation = -4279.404762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -49.12571 -41.47168 -40.22402 -39.41412 -36.48634 -35.93858 -34.42709 -33.97859 -32.51401 -32.09646 -29.38573 -28.15282 -27.46361 -27.05132 -25.43091 -24.81331 -23.50642 -22.31570 -21.60424 -21.08843 -20.16528 -18.99837 -18.32516 -17.87322 -17.54010 -17.13424 -16.92776 -16.59304 -16.51467 -16.18292 -15.85792 -15.70724 -15.53883 -15.39216 -15.00430 -14.86405 -14.53064 -14.08491 -13.98593 -13.84664 -13.64537 -13.62627 -13.58974 -13.43362 -13.34824 -13.02600 -12.98735 -12.58706 -12.49528 -12.38092 -12.18951 -12.05153 -11.95886 -11.79883 -11.67368 -11.64685 -11.46477 -11.30030 -11.20869 -10.98526 -10.53430 -10.51633 -10.16571 -8.65089 -8.18683 -5.55563 1.27632 1.28442 1.38050 1.48299 1.84237 2.42427 2.86856 3.04435 3.08748 3.20573 3.29300 3.40128 3.58668 3.75740 3.80731 3.89761 3.92847 4.17187 4.21803 4.25638 4.27922 4.38706 4.45830 4.54252 4.56079 4.58547 4.62467 4.70812 4.73410 4.79247 4.83141 4.86908 4.89436 4.95342 4.99212 5.03533 5.06105 5.07734 5.08228 5.19382 5.23359 5.34174 5.43059 5.44390 5.56175 5.68230 5.99647 6.14907 6.20679 6.35840 7.00521 7.03378 7.65524 8.14061 9.00627 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.002997 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.704705 B = 9339.069177 C = 9577.170275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.119 4.119 4 C -0.094 4.094 5 C 0.158 3.842 6 H 0.075 0.925 7 N -0.696 5.696 8 C 0.498 3.502 9 O -0.558 6.558 10 C 0.112 3.888 11 F -0.192 7.192 12 C -0.172 4.172 13 C 0.060 3.940 14 O -0.395 6.395 15 C 0.063 3.937 16 C -0.160 4.160 17 C -0.128 4.128 18 C 0.138 3.862 19 N -0.607 5.607 20 C -0.242 4.242 21 H 0.045 0.955 22 C 0.001 3.999 23 N -0.937 5.937 24 Si 0.920 3.080 25 H -0.279 1.279 26 H -0.309 1.309 27 H -0.270 1.270 28 C 0.154 3.846 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.261 0.739 51 H 0.033 0.967 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 -12.833 19.910 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.176 4.176 4 C -0.132 4.132 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.347 5.347 8 C 0.282 3.718 9 O -0.435 6.435 10 C 0.090 3.910 11 F -0.173 7.173 12 C -0.210 4.210 13 C -0.017 4.017 14 O -0.314 6.314 15 C -0.014 4.014 16 C -0.199 4.199 17 C -0.168 4.168 18 C 0.015 3.985 19 N -0.330 5.330 20 C -0.372 4.372 21 H 0.063 0.937 22 C -0.196 4.196 23 N -0.581 5.581 24 Si 0.750 3.250 25 H -0.207 1.207 26 H -0.237 1.237 27 H -0.195 1.195 28 C 0.027 3.973 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.141 0.859 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.051 0.949 50 H 0.070 0.930 51 H 0.051 0.949 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.093 -13.258 19.107 25.767 hybrid contribution -0.241 0.900 -1.241 1.552 sum -11.334 -12.357 17.866 24.503 Atomic orbital electron populations 1.21805 0.93586 1.01432 1.02145 1.21754 0.95265 0.95577 0.95944 1.21613 1.00807 0.95142 1.00059 1.21676 1.02000 0.92222 0.97338 1.20107 0.95831 0.92737 0.85984 0.90730 1.46046 1.60748 1.17532 1.10390 1.21132 0.77550 0.82018 0.91069 1.90740 1.55247 1.65085 1.32462 1.21195 0.91858 0.89684 0.88222 1.92903 1.72838 1.73422 1.78100 1.22859 0.95108 1.04389 0.98622 1.22738 0.98334 0.86293 0.94285 1.87950 1.37650 1.31353 1.74431 1.22702 0.86638 1.02065 0.89979 1.22589 1.02485 0.94291 1.00524 1.21130 0.96479 1.01151 0.98009 1.20468 0.99698 0.85024 0.93343 1.44241 1.02300 1.10067 1.76407 1.18480 0.96119 1.15944 1.06635 0.93712 1.25873 0.98525 0.96538 0.98678 1.69971 1.44884 1.12937 1.30280 0.86198 0.79807 0.79125 0.79851 1.20656 1.23730 1.19486 1.20816 0.85393 0.95864 0.95275 0.93452 0.93004 0.90681 0.91668 0.94087 0.95292 0.91740 0.90066 0.74867 0.88809 0.87122 0.91506 0.85875 0.91701 0.86334 0.89437 0.89178 0.91743 0.92192 0.91689 0.94867 0.92971 0.94883 0.96461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.21 71.98 0.59 -3.16 16 2 C -0.08 -2.80 0.77 -50.90 -0.04 -2.84 16 3 C -0.12 -4.42 8.29 71.98 0.60 -3.83 16 4 C -0.09 -2.71 4.15 30.30 0.13 -2.58 16 5 C 0.16 4.54 2.16 43.91 0.09 4.63 16 6 H 0.07 2.56 5.14 -2.39 -0.01 2.55 16 7 N -0.70 -15.48 4.92 -447.72 -2.20 -17.69 16 8 C 0.50 12.21 6.82 87.65 0.60 12.81 16 9 O -0.56 -18.19 15.59 -3.03 -0.05 -18.24 16 10 C 0.11 2.03 1.07 -11.42 -0.01 2.02 16 11 F -0.19 -3.51 16.06 44.97 0.72 -2.79 16 12 C -0.17 -2.27 5.17 30.69 0.16 -2.11 16 13 C 0.06 0.70 6.72 72.02 0.48 1.18 16 14 O -0.40 -6.36 10.77 -148.98 -1.60 -7.96 16 15 C 0.06 0.87 6.72 72.01 0.48 1.35 16 16 C -0.16 -2.85 4.56 30.69 0.14 -2.71 16 17 C -0.13 -4.04 4.92 28.35 0.14 -3.90 16 18 C 0.14 5.35 6.11 83.58 0.51 5.86 16 19 N -0.61 -27.61 2.13 -708.08 -1.51 -29.12 16 20 C -0.24 -13.11 9.23 84.03 0.78 -12.34 16 21 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 22 C 0.00 0.08 5.29 84.86 0.45 0.53 16 23 N -0.94 -56.84 13.97 21.65 0.30 -56.54 16 24 Si 0.92 46.67 25.25 68.60 1.73 48.40 16 25 H -0.28 -13.72 6.74 99.48 0.67 -13.05 16 26 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 27 H -0.27 -13.53 7.11 99.48 0.71 -12.83 16 28 C 0.15 6.48 3.04 87.61 0.27 6.74 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.05 1.44 7.57 -2.39 -0.02 1.42 16 31 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.82 7.44 -2.39 -0.02 1.80 16 34 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 35 H 0.06 2.05 6.65 -2.39 -0.02 2.03 16 36 H 0.08 1.86 7.68 -2.39 -0.02 1.84 16 37 H 0.41 6.75 8.41 -92.71 -0.78 5.97 16 38 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 40 H 0.07 0.70 7.93 -2.39 -0.02 0.68 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.82 7.93 -2.39 -0.02 0.80 16 43 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.09 1.79 7.96 -2.39 -0.02 1.77 16 46 H 0.06 2.08 6.93 -2.39 -0.02 2.07 16 47 H 0.06 1.74 8.02 -2.39 -0.02 1.72 16 48 H 0.06 2.54 7.99 -2.39 -0.02 2.52 16 49 H 0.03 1.29 8.12 -2.39 -0.02 1.27 16 50 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.03 1.35 6.67 -2.39 -0.02 1.33 16 52 H 0.02 0.83 3.24 -2.39 -0.01 0.82 16 Total: -1.00 -68.17 390.06 2.85 -65.32 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.10 Total: 16.96 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.36 Total: 1.66 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -3.41 Total: -103.35 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.65 Total: -26.21 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.72 Total: -2.79 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.73 Total: 48.40 kcal Total: -68.17 2.85 -65.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089403885.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.453 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds