Wall clock time and date at job start Wed Apr 1 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.26119 * 2 1 4 4 C 1.50886 * 109.36434 * 240.31835 * 2 1 3 5 5 C 1.52564 * 109.35857 * 331.69739 * 4 2 1 6 6 H 1.08996 * 108.39255 * 36.15411 * 5 4 2 7 7 N 1.46496 * 108.51211 * 153.73257 * 5 4 2 8 8 C 1.34777 * 120.00387 * 209.76577 * 7 5 4 9 9 O 1.21280 * 119.99639 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 5 11 11 F 1.39904 * 109.54546 * 54.99828 * 10 8 7 12 12 C 1.53177 * 109.54141 * 294.82377 * 10 8 7 13 13 C 1.53106 * 109.15613 * 183.24005 * 12 10 8 14 14 O 1.42903 * 109.48671 * 57.47289 * 13 12 10 15 15 C 1.42898 * 114.09835 * 298.88835 * 14 13 12 16 16 C 1.53097 * 109.41438 * 61.15752 * 15 14 13 17 17 C 1.47094 * 114.32483 * 274.98613 * 5 4 2 18 18 C 1.54867 * 110.32280 * 62.80269 * 17 5 4 19 19 N 1.44574 * 109.60069 * 288.73371 * 18 17 5 20 20 C 1.36942 * 118.64557 * 270.70113 * 19 18 17 21 21 H 1.07998 * 119.99383 * 27.27445 * 20 19 18 22 22 C 1.38806 * 119.99908 * 207.27293 * 20 19 18 23 23 N 1.31620 * 120.00530 * 16.33991 * 22 20 19 24 24 Si 1.86812 * 119.99709 * 196.33492 * 22 20 19 25 25 H 1.48494 * 109.46998 * 59.99986 * 24 22 20 26 26 H 1.48502 * 109.46869 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46969 * 300.00192 * 24 22 20 28 28 C 1.47612 * 122.71501 * 90.72858 * 19 18 17 29 29 H 1.09000 * 109.46452 * 300.92599 * 1 2 3 30 30 H 1.08996 * 109.46482 * 60.92606 * 1 2 3 31 31 H 1.08998 * 109.46969 * 180.92733 * 1 2 3 32 32 H 1.09006 * 109.46990 * 179.67992 * 3 2 1 33 33 H 1.08994 * 109.47582 * 299.68123 * 3 2 1 34 34 H 1.08999 * 109.47348 * 59.68238 * 3 2 1 35 35 H 1.08999 * 109.48799 * 91.66718 * 4 2 1 36 36 H 1.08998 * 109.48827 * 211.73167 * 4 2 1 37 37 H 0.97008 * 119.99906 * 29.76254 * 7 5 4 38 38 H 1.09002 * 109.52167 * 303.05276 * 12 10 8 39 39 H 1.09001 * 109.52838 * 63.24885 * 12 10 8 40 40 H 1.08993 * 109.40937 * 297.48959 * 13 12 10 41 41 H 1.09005 * 109.49151 * 177.50418 * 13 12 10 42 42 H 1.08996 * 109.48163 * 301.17309 * 15 14 13 43 43 H 1.09001 * 109.49285 * 181.14393 * 15 14 13 44 44 H 1.09004 * 109.51663 * 182.48359 * 16 15 14 45 45 H 1.09001 * 109.52058 * 62.30116 * 16 15 14 46 46 H 1.09007 * 109.32890 * 302.54157 * 17 5 4 47 47 H 1.08997 * 109.32885 * 183.06210 * 17 5 4 48 48 H 1.08999 * 109.44969 * 168.69232 * 18 17 5 49 49 H 1.09002 * 109.44551 * 48.77553 * 18 17 5 50 50 H 0.96995 * 119.99952 * 180.02562 * 23 22 20 51 51 H 1.08992 * 108.94854 * 197.18377 * 28 19 18 52 52 H 1.08993 * 108.87714 * 78.49952 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 -1.2367 5 6 1.0024 -1.7421 -1.6784 6 1 0.0066 -1.3427 -1.4867 7 7 1.1467 -1.9552 -3.1205 8 6 0.0766 -2.3076 -3.8602 9 8 -1.0061 -2.4478 -3.3318 10 6 0.2251 -2.5273 -5.3436 11 9 1.2289 -3.4732 -5.5784 12 6 0.5975 -1.2057 -6.0226 13 6 0.6668 -1.4209 -7.5369 14 8 -0.5876 -1.9199 -8.0054 15 6 -0.9632 -3.1774 -7.4400 16 6 -1.1002 -3.0323 -5.9221 17 6 1.1230 -3.0417 -0.9999 18 6 0.8753 -2.8798 0.5203 19 7 1.9928 -2.1879 1.1227 20 6 3.0503 -2.9257 1.5838 21 1 3.2741 -3.8845 1.1399 22 6 3.8345 -2.4412 2.6216 23 7 3.3951 -1.4540 3.3731 24 14 5.5136 -3.1905 2.9518 25 1 6.3713 -3.0322 1.7499 26 1 6.1451 -2.5009 4.1055 27 1 5.3589 -4.6343 3.2628 28 6 2.0406 -0.7192 1.2619 29 1 -0.3632 0.5282 0.8816 30 1 -0.3632 0.4994 -0.8982 31 1 -0.3633 -1.0275 0.0166 32 1 3.1248 1.4483 0.0057 33 1 1.6743 1.9552 -0.8928 34 1 1.6649 1.9585 0.8871 35 1 2.1792 0.0225 -2.0348 36 1 2.9755 -1.2008 -1.0154 37 1 2.0126 -1.8427 -3.5432 38 1 -0.1593 -0.4544 -5.7970 39 1 1.5673 -0.8686 -5.6565 40 1 1.4525 -2.1412 -7.7648 41 1 0.8880 -0.4738 -8.0291 42 1 -0.1989 -3.9207 -7.6666 43 1 -1.9164 -3.4958 -7.8621 44 1 -1.3435 -4.0004 -5.4842 45 1 -1.8924 -2.3191 -5.6944 46 1 2.1240 -3.4417 -1.1618 47 1 0.3894 -3.7338 -1.4131 48 1 0.7683 -3.8635 0.9774 49 1 -0.0366 -2.3045 0.6801 50 1 3.9433 -1.1152 4.0980 51 1 3.0700 -0.4149 1.4506 52 1 1.4236 -0.4251 2.1108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089403891.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:27 Heat of formation + Delta-G solvation = -120.656230 kcal Electronic energy + Delta-G solvation = -32801.804837 eV Core-core repulsion = 28522.838748 eV Total energy + Delta-G solvation = -4278.966089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -49.12819 -41.61996 -40.28328 -39.41863 -36.49663 -35.84784 -34.36991 -33.71241 -32.34230 -31.69309 -29.05554 -28.23838 -27.36875 -27.04830 -25.73945 -24.80592 -23.69988 -22.33792 -21.29240 -21.05829 -19.72250 -18.76959 -18.54854 -17.86202 -17.47484 -17.06135 -16.97864 -16.66289 -16.25529 -16.04104 -15.88379 -15.77215 -15.48409 -15.33526 -15.01128 -14.53059 -14.28227 -14.15906 -13.88587 -13.84522 -13.63527 -13.58389 -13.47365 -13.31640 -13.01806 -12.99584 -12.86329 -12.61626 -12.48676 -12.32190 -12.17527 -12.06298 -11.86168 -11.75358 -11.68346 -11.65183 -11.51667 -11.11108 -10.97962 -10.82690 -10.54820 -10.42021 -10.11891 -8.63132 -7.84184 -5.30725 1.31072 1.46458 1.47416 1.54363 1.90256 2.51881 2.86619 3.10780 3.21359 3.27918 3.41139 3.60410 3.65281 3.73379 3.80962 4.02408 4.10362 4.17213 4.18901 4.27245 4.37758 4.41334 4.46169 4.55328 4.58940 4.69831 4.71133 4.72934 4.79390 4.81969 4.83607 4.89028 4.94407 4.96790 5.02561 5.07511 5.10253 5.16240 5.20768 5.27840 5.39350 5.45365 5.51638 5.55245 5.66214 5.72894 5.86420 6.14105 6.38069 6.42609 7.01826 7.20616 7.96459 8.35537 9.19993 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002992 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.749339 B = 9357.105899 C = 9854.623261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.091 4.091 5 C 0.147 3.853 6 H 0.094 0.906 7 N -0.705 5.705 8 C 0.497 3.503 9 O -0.558 6.558 10 C 0.108 3.892 11 F -0.196 7.196 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.393 6.393 15 C 0.063 3.937 16 C -0.159 4.159 17 C -0.137 4.137 18 C 0.151 3.849 19 N -0.598 5.598 20 C -0.266 4.266 21 H 0.059 0.941 22 C -0.042 4.042 23 N -0.931 5.931 24 Si 0.959 3.041 25 H -0.278 1.278 26 H -0.295 1.295 27 H -0.280 1.280 28 C 0.206 3.794 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.409 0.591 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.050 0.950 48 H 0.033 0.967 49 H 0.053 0.947 50 H 0.249 0.751 51 H 0.041 0.959 52 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 3.446 -22.439 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.184 4.184 4 C -0.129 4.129 5 C 0.044 3.956 6 H 0.112 0.888 7 N -0.355 5.355 8 C 0.281 3.719 9 O -0.437 6.437 10 C 0.086 3.914 11 F -0.177 7.177 12 C -0.208 4.208 13 C -0.017 4.017 14 O -0.312 6.312 15 C -0.014 4.014 16 C -0.198 4.198 17 C -0.178 4.178 18 C 0.023 3.977 19 N -0.320 5.320 20 C -0.397 4.397 21 H 0.077 0.923 22 C -0.238 4.238 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.206 1.206 28 C 0.081 3.919 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -6.186 3.512 -22.035 23.155 hybrid contribution 1.616 -0.885 1.174 2.185 sum -4.570 2.627 -20.861 21.517 Atomic orbital electron populations 1.22285 0.94938 1.01833 1.01343 1.20806 0.95816 0.96158 0.95731 1.21755 1.00560 0.94014 1.02037 1.21184 0.98007 0.96719 0.97024 1.20186 1.01963 0.95363 0.78080 0.88827 1.46328 1.11755 1.68292 1.09081 1.21102 0.84531 0.76860 0.89376 1.90711 1.27599 1.51854 1.73498 1.21266 0.88384 0.90118 0.91587 1.92902 1.62653 1.66841 1.95268 1.22851 1.05603 0.94247 0.98121 1.22738 0.85831 1.01548 0.91560 1.87941 1.38898 1.37480 1.66884 1.22698 1.02628 0.85778 0.90285 1.22582 0.95043 1.04116 0.98014 1.21631 1.00680 0.97191 0.98304 1.20878 0.90301 0.95594 0.90880 1.43795 1.17552 1.01877 1.68764 1.19394 1.05820 1.02950 1.11525 0.92276 1.25685 1.02697 0.99693 0.95703 1.70213 1.37134 1.30723 1.19571 0.85477 0.80901 0.77873 0.76987 1.20375 1.22082 1.20618 1.20824 0.98271 0.81260 0.91561 0.93337 0.91602 0.92115 0.93337 0.90615 0.93189 0.89628 0.92711 0.75481 0.88387 0.87306 0.91859 0.85662 0.92018 0.86164 0.89667 0.88813 0.93306 0.93142 0.94871 0.92933 0.94207 0.94046 0.99064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 6.76 71.99 0.49 -4.16 16 2 C -0.08 -2.83 0.75 -52.55 -0.04 -2.87 16 3 C -0.13 -3.64 8.15 71.98 0.59 -3.06 16 4 C -0.09 -2.81 4.39 29.76 0.13 -2.68 16 5 C 0.15 4.54 1.79 43.01 0.08 4.62 16 6 H 0.09 3.08 3.95 -2.39 -0.01 3.07 16 7 N -0.70 -17.74 4.85 -452.07 -2.19 -19.93 16 8 C 0.50 13.09 6.67 87.66 0.58 13.67 16 9 O -0.56 -18.60 15.44 -3.03 -0.05 -18.65 16 10 C 0.11 2.16 1.07 -11.42 -0.01 2.14 16 11 F -0.20 -4.22 16.06 44.97 0.72 -3.50 16 12 C -0.17 -2.40 5.17 30.69 0.16 -2.25 16 13 C 0.06 0.75 6.72 72.02 0.48 1.23 16 14 O -0.39 -6.57 10.77 -148.98 -1.60 -8.18 16 15 C 0.06 0.94 6.72 72.01 0.48 1.42 16 16 C -0.16 -3.00 4.56 30.68 0.14 -2.86 16 17 C -0.14 -4.98 5.20 29.40 0.15 -4.83 16 18 C 0.15 6.40 5.58 87.38 0.49 6.89 16 19 N -0.60 -29.10 2.27 -698.36 -1.58 -30.68 16 20 C -0.27 -14.42 9.43 84.03 0.79 -13.63 16 21 H 0.06 3.19 7.88 -2.91 -0.02 3.16 16 22 C -0.04 -2.31 4.84 84.86 0.41 -1.90 16 23 N -0.93 -54.15 11.11 21.65 0.24 -53.91 16 24 Si 0.96 44.54 29.58 68.60 2.03 46.56 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 28 C 0.21 9.50 3.56 86.49 0.31 9.81 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.77 7.88 -2.39 -0.02 1.75 16 31 H 0.06 2.09 3.17 -2.39 -0.01 2.08 16 32 H 0.05 1.44 8.12 -2.38 -0.02 1.42 16 33 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 2.09 7.63 -2.39 -0.02 2.07 16 36 H 0.05 2.00 7.48 -2.39 -0.02 1.98 16 37 H 0.41 8.36 8.50 -92.70 -0.79 7.57 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.17 8.03 -2.39 -0.02 1.15 16 40 H 0.06 0.76 7.93 -2.39 -0.02 0.74 16 41 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.06 0.88 7.93 -2.39 -0.02 0.86 16 43 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.88 7.96 -2.39 -0.02 1.86 16 46 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.84 7.95 -2.39 -0.02 1.82 16 48 H 0.03 1.47 7.99 -2.39 -0.02 1.45 16 49 H 0.05 2.15 5.21 -2.39 -0.01 2.14 16 50 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.04 2.16 6.23 -2.39 -0.01 2.15 16 52 H -0.01 -0.46 7.87 -2.39 -0.02 -0.48 16 Total: -1.00 -66.41 387.84 2.93 -63.48 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.13 Total: 23.24 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.23 Total: 1.57 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -3.54 Total: -104.53 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.65 Total: -26.82 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.72 Total: -3.50 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.41 2.93 -63.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089403891.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.175 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds