Wall clock time and date at job start Wed Apr 1 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.36664 * 2 1 4 4 C 1.50878 * 109.36806 * 119.74278 * 2 1 3 5 5 C 1.52570 * 109.36037 * 212.08217 * 4 2 1 6 6 H 1.08998 * 108.50656 * 36.23943 * 5 4 2 7 7 N 1.46500 * 108.51140 * 153.72725 * 5 4 2 8 8 C 1.34781 * 119.99581 * 209.76756 * 7 5 4 9 9 O 1.21280 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99652 * 180.02562 * 8 7 5 11 11 H 1.09003 * 112.82972 * 309.66439 * 10 8 7 12 12 C 1.53520 * 113.58572 * 178.55795 * 10 8 7 13 13 C 1.51612 * 87.24280 * 245.40977 * 12 10 8 14 14 C 1.38373 * 147.52398 * 180.02562 * 13 12 10 15 15 C 1.38091 * 120.32598 * 179.97438 * 14 13 12 16 16 C 1.38245 * 119.95416 * 0.02562 * 15 14 13 17 17 C 1.38092 * 119.95493 * 0.02562 * 16 15 14 18 18 C 1.38248 * 120.41057 * 359.92718 * 17 16 15 19 19 C 1.47090 * 114.32498 * 274.98441 * 5 4 2 20 20 C 1.54859 * 110.32088 * 62.79795 * 19 5 4 21 21 N 1.44573 * 109.60395 * 288.73514 * 20 19 5 22 22 C 1.36944 * 118.64298 * 270.72670 * 21 20 19 23 23 H 1.07998 * 120.00371 * 27.25601 * 22 21 20 24 24 C 1.38819 * 119.99879 * 207.25479 * 22 21 20 25 25 N 1.31620 * 120.00054 * 16.33869 * 24 22 21 26 26 Si 1.86796 * 119.99784 * 196.34205 * 24 22 21 27 27 H 1.48499 * 109.47067 * 90.00198 * 26 24 22 28 28 H 1.48501 * 109.47209 * 209.99824 * 26 24 22 29 29 H 1.48500 * 109.47489 * 330.00001 * 26 24 22 30 30 C 1.47606 * 122.71374 * 90.72760 * 21 20 19 31 31 H 1.09001 * 109.47078 * 300.25910 * 1 2 3 32 32 H 1.09005 * 109.46895 * 60.25464 * 1 2 3 33 33 H 1.09000 * 109.47180 * 180.25104 * 1 2 3 34 34 H 1.09002 * 109.47254 * 180.56831 * 3 2 1 35 35 H 1.09000 * 109.47060 * 300.56260 * 3 2 1 36 36 H 1.08996 * 109.47718 * 60.56791 * 3 2 1 37 37 H 1.09000 * 109.49400 * 92.11493 * 4 2 1 38 38 H 1.08999 * 109.48855 * 332.05065 * 4 2 1 39 39 H 0.96994 * 120.00557 * 29.76734 * 7 5 4 40 40 H 1.09005 * 113.58989 * 359.97438 * 12 10 8 41 41 H 1.08996 * 113.59174 * 130.81744 * 12 10 8 42 42 H 1.08002 * 119.83969 * 359.95197 * 14 13 12 43 43 H 1.07998 * 120.02439 * 180.02562 * 15 14 13 44 44 H 1.08001 * 120.02622 * 180.02562 * 16 15 14 45 45 H 1.07999 * 119.83628 * 180.02562 * 17 16 15 46 46 H 1.09010 * 109.32673 * 183.05929 * 19 5 4 47 47 H 1.08995 * 109.32906 * 302.52990 * 19 5 4 48 48 H 1.08999 * 109.45343 * 48.78120 * 20 19 5 49 49 H 1.09003 * 109.44899 * 168.69463 * 20 19 5 50 50 H 0.96998 * 119.99986 * 180.02562 * 25 24 22 51 51 H 1.08998 * 108.94763 * 197.18072 * 30 21 20 52 52 H 1.08998 * 108.94432 * 78.55433 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0373 1.4434 0.0000 4 6 2.0303 -0.7062 1.2359 5 6 3.3486 -0.0784 1.6783 6 1 3.3015 0.9942 1.4900 7 7 3.5021 -0.2865 3.1203 8 6 4.1877 0.6069 3.8608 9 8 4.6773 1.5832 3.3334 10 6 4.3461 0.3926 5.3441 11 1 3.4004 0.1846 5.8447 12 6 5.1814 1.4791 6.0360 13 6 6.2072 0.4015 6.3279 14 6 7.4257 0.0728 6.8951 15 6 7.8922 -1.2259 6.8412 16 6 7.1403 -2.2041 6.2176 17 6 5.9240 -1.8812 5.6490 18 6 5.4502 -0.5834 5.7000 19 6 4.5356 -0.6201 0.9993 20 6 4.4645 -0.3314 -0.5205 21 7 3.4428 -1.1574 -1.1239 22 6 3.7903 -2.3988 -1.5858 23 1 4.6215 -2.9268 -1.1424 24 6 3.0742 -2.9786 -2.6241 25 7 2.2872 -2.2375 -3.3750 26 14 3.2273 -4.8105 -2.9554 27 1 2.2018 -5.5430 -2.1700 28 1 3.0212 -5.0707 -4.4029 29 1 4.5806 -5.2743 -2.5569 30 6 2.0405 -0.7178 -1.2625 31 1 -0.3633 0.5179 0.8877 32 1 -0.3633 0.5099 -0.8923 33 1 -0.3633 -1.0276 0.0045 34 1 3.1273 1.4454 -0.0102 35 1 1.6648 1.9595 -0.8849 36 1 1.6814 1.9537 0.8950 37 1 2.1867 -1.7617 1.0135 38 1 1.2946 -0.6075 2.0340 39 1 3.1103 -1.0670 3.5422 40 1 5.5419 2.2512 5.3562 41 1 4.7111 1.8874 6.9305 42 1 8.0151 0.8356 7.3821 43 1 8.8438 -1.4771 7.2858 44 1 7.5039 -3.2202 6.1751 45 1 5.3380 -2.6470 5.1627 46 1 5.4311 -0.1563 1.4131 47 1 4.5832 -1.6971 1.1601 48 1 4.2224 0.7195 -0.6794 49 1 5.4284 -0.5544 -0.9779 50 1 1.7865 -2.6427 -4.1002 51 1 1.4136 -1.5891 -1.4523 52 1 1.9650 -0.0380 -2.1112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089476934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:42 Heat of formation + Delta-G solvation = 57.346051 kcal Electronic energy + Delta-G solvation = -31087.693738 eV Core-core repulsion = 27247.215632 eV Total energy + Delta-G solvation = -3840.478106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -41.08013 -39.74240 -38.25363 -35.42148 -34.73011 -34.20845 -32.05656 -31.01047 -30.10981 -27.87145 -27.38980 -26.86168 -25.49100 -25.36232 -23.97372 -22.52895 -21.71442 -20.95924 -19.82429 -19.60749 -18.03670 -17.25291 -16.86194 -16.65299 -16.02410 -15.48830 -15.21971 -15.01759 -14.47133 -14.33189 -14.19044 -13.83493 -13.48906 -13.26760 -13.18004 -12.88882 -12.70671 -12.62509 -12.57152 -12.26991 -12.21574 -12.06161 -11.76516 -11.48319 -11.40946 -11.16827 -11.10180 -10.79385 -10.74133 -10.66793 -10.39141 -10.31919 -10.25159 -10.02715 -9.81695 -9.63188 -9.45164 -9.24749 -9.00653 -8.74573 -8.69930 -8.37306 -6.62563 -5.76380 -3.20137 1.08422 1.21477 2.67753 3.29976 3.37066 3.44738 3.45537 3.60427 3.98227 4.18924 4.26427 4.50906 4.84063 4.86003 4.91116 5.03081 5.19291 5.30035 5.37728 5.40441 5.43319 5.50791 5.53211 5.62516 5.67038 5.71588 5.80909 5.90077 5.92584 5.95076 6.09624 6.19686 6.24513 6.26383 6.28558 6.30926 6.34036 6.38061 6.43215 6.51816 6.65611 6.67674 6.78163 6.78490 6.80772 6.89388 6.94208 7.01228 7.18686 7.45122 7.69893 7.74417 7.84782 8.37137 8.49544 9.26504 9.93310 10.39143 11.30592 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.003174 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.315675 B = 8820.244120 C =10214.991748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.100 4.100 5 C 0.141 3.859 6 H 0.097 0.903 7 N -0.721 5.721 8 C 0.528 3.472 9 O -0.538 6.538 10 C -0.069 4.069 11 H 0.118 0.882 12 C -0.056 4.056 13 C -0.120 4.120 14 C -0.099 4.099 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.085 4.085 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.154 3.846 21 N -0.588 5.588 22 C -0.258 4.258 23 H 0.064 0.936 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.898 3.102 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.191 3.809 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.394 0.606 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.047 0.953 50 H 0.253 0.747 51 H 0.073 0.927 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 4.326 20.268 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.211 4.211 4 C -0.138 4.138 5 C 0.039 3.961 6 H 0.114 0.886 7 N -0.371 5.371 8 C 0.312 3.688 9 O -0.415 6.415 10 C -0.090 4.090 11 H 0.136 0.864 12 C -0.093 4.093 13 C -0.120 4.120 14 C -0.117 4.117 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.194 4.194 20 C 0.025 3.975 21 N -0.308 5.308 22 C -0.388 4.388 23 H 0.082 0.918 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.728 3.272 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.066 3.934 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.711 4.994 19.690 20.494 hybrid contribution -0.143 -1.671 0.041 1.677 sum 2.569 3.323 19.731 20.173 Atomic orbital electron populations 1.21787 0.95169 1.01259 1.00602 1.20912 0.94810 0.95439 0.97908 1.22387 1.02391 0.96144 1.00190 1.21285 0.94224 1.01691 0.96635 1.20409 0.95688 1.02846 0.77149 0.88566 1.46474 1.54866 1.25707 1.10011 1.19922 0.78199 0.82938 0.87708 1.90682 1.47942 1.29746 1.73113 1.21578 0.98588 0.94639 0.94220 0.86415 1.21806 0.91677 0.95701 1.00147 1.22297 0.94705 0.97398 0.97566 1.20288 0.94727 0.96425 1.00251 1.21020 0.99775 0.92699 0.99667 1.20993 0.94446 0.99637 0.98737 1.20321 0.96046 0.94783 0.99113 1.21745 0.96931 0.93804 0.99871 1.21852 0.96291 1.01169 1.00103 1.20795 0.92963 0.94175 0.89555 1.43630 1.03041 1.15630 1.68546 1.19202 1.15236 0.92633 1.11698 0.91847 1.25022 1.00526 0.98076 0.95629 1.70069 1.31863 1.33559 1.19099 0.86359 0.77841 0.85939 0.77040 1.21559 1.21835 1.20516 1.21070 0.84734 0.97595 0.89970 0.93825 0.92861 0.92887 0.90681 0.93247 0.94019 0.90372 0.93034 0.77283 0.87208 0.88676 0.86355 0.85633 0.85509 0.86219 0.93120 0.92197 0.93747 0.93501 0.93731 0.90865 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.15 37.15 0.30 -1.75 16 2 C -0.09 -1.58 0.75 -155.08 -0.12 -1.69 16 3 C -0.15 -2.61 6.76 37.16 0.25 -2.36 16 4 C -0.10 -1.66 4.39 -28.02 -0.12 -1.79 16 5 C 0.14 2.33 1.79 -70.99 -0.13 2.20 16 6 H 0.10 1.72 3.95 -51.93 -0.21 1.51 16 7 N -0.72 -9.94 4.88 -56.81 -0.28 -10.22 16 8 C 0.53 7.55 7.21 -10.98 -0.08 7.47 16 9 O -0.54 -9.63 15.20 5.56 0.08 -9.55 16 10 C -0.07 -0.75 4.33 -92.23 -0.40 -1.15 16 11 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 12 C -0.06 -0.58 7.77 -27.18 -0.21 -0.79 16 13 C -0.12 -1.36 7.49 -103.79 -0.78 -2.13 16 14 C -0.10 -1.01 10.03 -39.59 -0.40 -1.40 16 15 C -0.11 -1.07 10.04 -39.63 -0.40 -1.47 16 16 C -0.12 -1.19 10.04 -39.63 -0.40 -1.59 16 17 C -0.08 -0.93 10.02 -39.63 -0.40 -1.33 16 18 C -0.12 -1.43 6.98 -103.83 -0.73 -2.16 16 19 C -0.15 -2.84 5.20 -28.59 -0.15 -2.99 16 20 C 0.15 3.25 5.58 -4.09 -0.02 3.22 16 21 N -0.59 -14.05 2.27 -172.09 -0.39 -14.44 16 22 C -0.26 -6.86 9.43 -15.05 -0.14 -7.00 16 23 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 24 C 0.01 0.17 4.84 -17.43 -0.08 0.08 16 25 N -0.90 -25.57 11.11 55.49 0.62 -24.95 16 26 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 30 C 0.19 4.35 3.56 -2.94 -0.01 4.34 16 31 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.07 1.35 3.15 -51.93 -0.16 1.19 16 35 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 37 H 0.08 1.48 7.48 -51.93 -0.39 1.09 16 38 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 39 H 0.39 4.48 8.61 -40.82 -0.35 4.13 16 40 H 0.11 1.30 7.04 -51.93 -0.37 0.93 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.05 0.96 7.95 -51.92 -0.41 0.55 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.04 0.91 5.21 -51.93 -0.27 0.64 16 49 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.07 1.87 6.23 -51.93 -0.32 1.54 16 52 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -30.81 395.07 -11.35 -42.16 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.31 Total: 6.94 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -4.00 Total: -12.28 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.05 Total: -49.61 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.81 -11.35 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.504 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds