Wall clock time and date at job start Wed Apr 1 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.36664 * 2 1 4 4 C 1.50878 * 109.36806 * 119.74278 * 2 1 3 5 5 C 1.52570 * 109.36037 * 212.08217 * 4 2 1 6 6 H 1.08998 * 108.50656 * 36.23943 * 5 4 2 7 7 N 1.46500 * 108.51140 * 153.72725 * 5 4 2 8 8 C 1.34781 * 119.99581 * 209.76756 * 7 5 4 9 9 O 1.21280 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99652 * 180.02562 * 8 7 5 11 11 H 1.09003 * 112.82972 * 309.66439 * 10 8 7 12 12 C 1.53520 * 113.58572 * 178.55795 * 10 8 7 13 13 C 1.51612 * 87.24280 * 245.40977 * 12 10 8 14 14 C 1.38373 * 147.52398 * 180.02562 * 13 12 10 15 15 C 1.38091 * 120.32598 * 179.97438 * 14 13 12 16 16 C 1.38245 * 119.95416 * 0.02562 * 15 14 13 17 17 C 1.38092 * 119.95493 * 0.02562 * 16 15 14 18 18 C 1.38248 * 120.41057 * 359.92718 * 17 16 15 19 19 C 1.47090 * 114.32498 * 274.98441 * 5 4 2 20 20 C 1.54859 * 110.32088 * 62.79795 * 19 5 4 21 21 N 1.44573 * 109.60395 * 288.73514 * 20 19 5 22 22 C 1.36944 * 118.64298 * 270.72670 * 21 20 19 23 23 H 1.07998 * 120.00371 * 27.25601 * 22 21 20 24 24 C 1.38819 * 119.99879 * 207.25479 * 22 21 20 25 25 N 1.31620 * 120.00054 * 16.33869 * 24 22 21 26 26 Si 1.86796 * 119.99784 * 196.34205 * 24 22 21 27 27 H 1.48499 * 109.47067 * 90.00198 * 26 24 22 28 28 H 1.48501 * 109.47209 * 209.99824 * 26 24 22 29 29 H 1.48500 * 109.47489 * 330.00001 * 26 24 22 30 30 C 1.47606 * 122.71374 * 90.72760 * 21 20 19 31 31 H 1.09001 * 109.47078 * 300.25910 * 1 2 3 32 32 H 1.09005 * 109.46895 * 60.25464 * 1 2 3 33 33 H 1.09000 * 109.47180 * 180.25104 * 1 2 3 34 34 H 1.09002 * 109.47254 * 180.56831 * 3 2 1 35 35 H 1.09000 * 109.47060 * 300.56260 * 3 2 1 36 36 H 1.08996 * 109.47718 * 60.56791 * 3 2 1 37 37 H 1.09000 * 109.49400 * 92.11493 * 4 2 1 38 38 H 1.08999 * 109.48855 * 332.05065 * 4 2 1 39 39 H 0.96994 * 120.00557 * 29.76734 * 7 5 4 40 40 H 1.09005 * 113.58989 * 359.97438 * 12 10 8 41 41 H 1.08996 * 113.59174 * 130.81744 * 12 10 8 42 42 H 1.08002 * 119.83969 * 359.95197 * 14 13 12 43 43 H 1.07998 * 120.02439 * 180.02562 * 15 14 13 44 44 H 1.08001 * 120.02622 * 180.02562 * 16 15 14 45 45 H 1.07999 * 119.83628 * 180.02562 * 17 16 15 46 46 H 1.09010 * 109.32673 * 183.05929 * 19 5 4 47 47 H 1.08995 * 109.32906 * 302.52990 * 19 5 4 48 48 H 1.08999 * 109.45343 * 48.78120 * 20 19 5 49 49 H 1.09003 * 109.44899 * 168.69463 * 20 19 5 50 50 H 0.96998 * 119.99986 * 180.02562 * 25 24 22 51 51 H 1.08998 * 108.94763 * 197.18072 * 30 21 20 52 52 H 1.08998 * 108.94432 * 78.55433 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0373 1.4434 0.0000 4 6 2.0303 -0.7062 1.2359 5 6 3.3486 -0.0784 1.6783 6 1 3.3015 0.9942 1.4900 7 7 3.5021 -0.2865 3.1203 8 6 4.1877 0.6069 3.8608 9 8 4.6773 1.5832 3.3334 10 6 4.3461 0.3926 5.3441 11 1 3.4004 0.1846 5.8447 12 6 5.1814 1.4791 6.0360 13 6 6.2072 0.4015 6.3279 14 6 7.4257 0.0728 6.8951 15 6 7.8922 -1.2259 6.8412 16 6 7.1403 -2.2041 6.2176 17 6 5.9240 -1.8812 5.6490 18 6 5.4502 -0.5834 5.7000 19 6 4.5356 -0.6201 0.9993 20 6 4.4645 -0.3314 -0.5205 21 7 3.4428 -1.1574 -1.1239 22 6 3.7903 -2.3988 -1.5858 23 1 4.6215 -2.9268 -1.1424 24 6 3.0742 -2.9786 -2.6241 25 7 2.2872 -2.2375 -3.3750 26 14 3.2273 -4.8105 -2.9554 27 1 2.2018 -5.5430 -2.1700 28 1 3.0212 -5.0707 -4.4029 29 1 4.5806 -5.2743 -2.5569 30 6 2.0405 -0.7178 -1.2625 31 1 -0.3633 0.5179 0.8877 32 1 -0.3633 0.5099 -0.8923 33 1 -0.3633 -1.0276 0.0045 34 1 3.1273 1.4454 -0.0102 35 1 1.6648 1.9595 -0.8849 36 1 1.6814 1.9537 0.8950 37 1 2.1867 -1.7617 1.0135 38 1 1.2946 -0.6075 2.0340 39 1 3.1103 -1.0670 3.5422 40 1 5.5419 2.2512 5.3562 41 1 4.7111 1.8874 6.9305 42 1 8.0151 0.8356 7.3821 43 1 8.8438 -1.4771 7.2858 44 1 7.5039 -3.2202 6.1751 45 1 5.3380 -2.6470 5.1627 46 1 5.4311 -0.1563 1.4131 47 1 4.5832 -1.6971 1.1601 48 1 4.2224 0.7195 -0.6794 49 1 5.4284 -0.5544 -0.9779 50 1 1.7865 -2.6427 -4.1002 51 1 1.4136 -1.5891 -1.4523 52 1 1.9650 -0.0380 -2.1112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089476934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:35 Heat of formation + Delta-G solvation = 41.687476 kcal Electronic energy + Delta-G solvation = -31088.372745 eV Core-core repulsion = 27247.215632 eV Total energy + Delta-G solvation = -3841.157113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.58 seconds Orbital eigenvalues (eV) -42.04203 -41.01300 -39.49861 -36.52231 -36.05737 -35.74710 -33.78708 -32.00424 -31.56075 -29.12070 -28.44584 -28.22044 -27.35436 -26.38147 -25.60986 -23.71319 -22.88151 -21.97068 -21.24590 -20.80080 -19.41713 -18.55802 -18.36252 -17.68037 -17.33283 -16.98313 -16.31362 -16.01521 -15.99804 -15.66104 -15.33753 -15.29990 -15.10946 -14.55717 -14.28228 -14.18762 -13.92296 -13.90362 -13.80638 -13.52334 -13.34038 -13.07633 -12.99223 -12.90476 -12.86207 -12.85068 -12.64305 -12.28027 -12.13609 -12.02917 -11.92048 -11.79383 -11.64116 -11.56593 -11.42756 -11.09309 -10.87454 -10.79244 -10.44115 -10.00676 -9.78696 -9.50629 -8.62347 -7.83392 -5.30049 0.30951 0.44455 1.45916 1.47293 1.55675 1.59184 2.20874 2.52245 2.81730 3.16712 3.28701 3.43328 3.44800 3.66881 3.74208 3.90319 4.04774 4.13971 4.19443 4.20167 4.21639 4.30518 4.42257 4.45623 4.65024 4.70303 4.72981 4.73189 4.80637 4.83008 4.84240 4.85616 4.94995 4.99061 5.02756 5.05341 5.12781 5.15655 5.19110 5.25183 5.29567 5.41740 5.46253 5.51104 5.55559 5.56750 5.61541 5.67618 5.73904 5.74322 5.87586 6.05279 6.42792 6.60633 7.21120 7.27466 7.97024 8.36488 9.20887 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.003174 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.315675 B = 8820.244120 C =10214.991748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.090 4.090 5 C 0.148 3.852 6 H 0.090 0.910 7 N -0.712 5.712 8 C 0.526 3.474 9 O -0.577 6.577 10 C -0.061 4.061 11 H 0.150 0.850 12 C -0.052 4.052 13 C -0.138 4.138 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.143 4.143 19 C -0.133 4.133 20 C 0.151 3.849 21 N -0.598 5.598 22 C -0.264 4.264 23 H 0.060 0.940 24 C -0.043 4.043 25 N -0.931 5.931 26 Si 0.959 3.041 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.273 1.273 30 C 0.205 3.795 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.409 0.591 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.126 0.874 46 H 0.045 0.955 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.031 0.969 50 H 0.248 0.752 51 H 0.041 0.959 52 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 4.094 23.168 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.204 4.204 4 C -0.128 4.128 5 C 0.045 3.955 6 H 0.108 0.892 7 N -0.362 5.362 8 C 0.313 3.687 9 O -0.457 6.457 10 C -0.081 4.081 11 H 0.168 0.832 12 C -0.089 4.089 13 C -0.138 4.138 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.143 4.143 19 C -0.174 4.174 20 C 0.023 3.977 21 N -0.319 5.319 22 C -0.395 4.395 23 H 0.077 0.923 24 C -0.239 4.239 25 N -0.577 5.577 26 Si 0.788 3.212 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.198 1.198 30 C 0.080 3.920 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.244 0.756 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.144 0.856 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 2.413 4.749 22.635 23.253 hybrid contribution 0.063 -1.577 -0.868 1.802 sum 2.476 3.172 21.766 22.135 Atomic orbital electron populations 1.21752 0.93152 1.01475 1.01981 1.20795 0.96382 0.95497 0.95805 1.22285 1.01362 0.95477 1.01251 1.21166 0.94943 0.99806 0.96895 1.20092 0.94619 1.02077 0.78712 0.89226 1.46276 1.54893 1.26332 1.08724 1.20519 0.77012 0.82041 0.89115 1.90669 1.49371 1.31396 1.74216 1.21589 1.00123 0.94827 0.91600 0.83214 1.21819 0.91461 0.94909 1.00746 1.22576 0.95376 0.97767 0.98124 1.20625 0.94657 0.97349 1.00182 1.21390 1.00624 0.92320 0.99037 1.21328 0.94154 1.00843 0.98325 1.20574 0.96779 0.94946 0.99611 1.21901 0.97483 0.94240 1.00679 1.21585 0.97390 1.00331 0.98074 1.20880 0.91552 0.94197 0.91064 1.43787 1.04108 1.15327 1.68697 1.19436 1.14936 0.93696 1.11415 0.92275 1.25693 1.00726 1.01732 0.95701 1.70226 1.32898 1.34931 1.19639 0.85388 0.78019 0.81410 0.76352 1.21021 1.22359 1.19793 1.20831 0.83803 0.95781 0.91587 0.90671 0.93230 0.93313 0.92143 0.93429 0.91659 0.92758 0.89763 0.75550 0.89129 0.85801 0.84630 0.83121 0.83612 0.85610 0.93594 0.93352 0.93075 0.95073 0.94238 0.94024 0.99091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.15 71.98 0.59 -3.16 16 2 C -0.08 -2.89 0.75 -52.55 -0.04 -2.93 16 3 C -0.15 -4.80 6.76 71.98 0.49 -4.32 16 4 C -0.09 -2.85 4.39 29.76 0.13 -2.72 16 5 C 0.15 4.72 1.79 43.01 0.08 4.80 16 6 H 0.09 3.08 3.95 -2.39 -0.01 3.07 16 7 N -0.71 -18.23 4.88 -452.04 -2.21 -20.44 16 8 C 0.53 14.20 7.21 87.66 0.63 14.83 16 9 O -0.58 -20.24 15.20 -3.03 -0.05 -20.29 16 10 C -0.06 -1.18 4.33 -11.83 -0.05 -1.23 16 11 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 12 C -0.05 -0.98 7.77 30.31 0.24 -0.75 16 13 C -0.14 -2.91 7.49 -19.33 -0.14 -3.06 16 14 C -0.11 -2.04 10.03 22.27 0.22 -1.82 16 15 C -0.12 -1.94 10.04 22.24 0.22 -1.71 16 16 C -0.13 -2.30 10.04 22.24 0.22 -2.08 16 17 C -0.10 -2.08 10.02 22.24 0.22 -1.85 16 18 C -0.14 -3.08 6.98 -19.35 -0.14 -3.21 16 19 C -0.13 -4.95 5.20 29.39 0.15 -4.80 16 20 C 0.15 6.54 5.58 87.37 0.49 7.02 16 21 N -0.60 -29.45 2.27 -698.38 -1.58 -31.03 16 22 C -0.26 -14.42 9.43 84.03 0.79 -13.63 16 23 H 0.06 3.22 7.88 -2.91 -0.02 3.19 16 24 C -0.04 -2.37 4.84 84.86 0.41 -1.96 16 25 N -0.93 -54.56 11.11 21.65 0.24 -54.32 16 26 Si 0.96 44.77 29.58 68.60 2.03 46.80 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 30 C 0.20 9.61 3.56 86.49 0.31 9.92 16 31 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.06 2.16 3.15 -2.39 -0.01 2.15 16 35 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 36 H 0.06 1.84 7.89 -2.39 -0.02 1.82 16 37 H 0.05 2.01 7.48 -2.39 -0.02 1.99 16 38 H 0.08 2.14 7.64 -2.39 -0.02 2.12 16 39 H 0.41 8.21 8.61 -92.71 -0.80 7.42 16 40 H 0.09 2.07 7.04 -2.38 -0.02 2.06 16 41 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 46 H 0.05 1.75 7.95 -2.38 -0.02 1.73 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.05 2.15 5.21 -2.39 -0.01 2.14 16 49 H 0.03 1.41 7.99 -2.39 -0.02 1.39 16 50 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.04 2.20 6.23 -2.39 -0.01 2.18 16 52 H -0.01 -0.48 7.86 -2.39 -0.02 -0.50 16 Total: -1.00 -69.01 395.07 3.38 -65.63 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.13 Total: 26.29 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.82 Total: -12.64 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.55 Total: -105.79 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.01 3.38 -65.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.321 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.58 seconds