Wall clock time and date at job start Wed Apr 1 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.24550 * 2 1 4 4 C 1.54717 * 109.47295 * 240.50120 * 2 1 3 5 5 C 1.50127 * 110.90839 * 201.10626 * 4 2 1 6 6 H 1.09001 * 110.25223 * 338.56436 * 5 4 2 7 7 N 1.46490 * 110.37471 * 216.56145 * 5 4 2 8 8 C 1.34776 * 120.00355 * 158.94545 * 7 5 4 9 9 O 1.21285 * 120.00028 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00383 * 180.02562 * 8 7 5 11 11 H 1.09001 * 112.50367 * 309.68048 * 10 8 7 12 12 C 1.52887 * 113.16728 * 179.77781 * 10 8 7 13 13 C 1.51432 * 84.72707 * 244.77748 * 12 10 8 14 14 C 1.38946 * 145.52528 * 180.02562 * 13 12 10 15 15 C 1.37974 * 120.32583 * 179.97438 * 14 13 12 16 16 C 1.38243 * 120.17437 * 0.02562 * 15 14 13 17 17 C 1.38173 * 119.75074 * 0.02562 * 16 15 14 18 18 C 1.38244 * 120.12305 * 359.97176 * 17 16 15 19 19 C 1.52529 * 105.41183 * 97.52667 * 5 4 2 20 20 C 1.46235 * 114.28285 * 270.59517 * 19 5 4 21 21 N 1.50171 * 107.52969 * 58.40729 * 20 19 5 22 22 C 1.36941 * 120.53546 * 109.57320 * 21 20 19 23 23 H 1.08000 * 119.99698 * 156.69848 * 22 21 20 24 24 C 1.38805 * 120.00127 * 336.69277 * 22 21 20 25 25 N 1.31619 * 119.99810 * 340.43402 * 24 22 21 26 26 Si 1.86798 * 120.00080 * 160.42918 * 24 22 21 27 27 H 1.48506 * 109.46850 * 90.00225 * 26 24 22 28 28 H 1.48505 * 109.47172 * 209.99866 * 26 24 22 29 29 H 1.48497 * 109.47372 * 330.00279 * 26 24 22 30 30 C 1.43429 * 118.92709 * 289.58880 * 21 20 19 31 31 H 1.08995 * 109.46949 * 300.34094 * 1 2 3 32 32 H 1.09001 * 109.47126 * 60.33746 * 1 2 3 33 33 H 1.08996 * 109.46885 * 180.34100 * 1 2 3 34 34 H 1.09006 * 109.46966 * 179.66112 * 3 2 1 35 35 H 1.08997 * 109.47211 * 299.65695 * 3 2 1 36 36 H 1.08991 * 109.46985 * 59.66105 * 3 2 1 37 37 H 1.09005 * 109.28733 * 80.65701 * 4 2 1 38 38 H 1.08994 * 109.00271 * 321.37693 * 4 2 1 39 39 H 0.97002 * 120.00181 * 338.95454 * 7 5 4 40 40 H 1.08997 * 113.98871 * 358.72336 * 12 10 8 41 41 H 1.08999 * 113.98668 * 130.83148 * 12 10 8 42 42 H 1.07998 * 119.83922 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.91721 * 180.02562 * 15 14 13 44 44 H 1.08005 * 120.12524 * 180.02562 * 16 15 14 45 45 H 1.07997 * 119.93925 * 180.02562 * 17 16 15 46 46 H 1.09000 * 108.52563 * 149.35035 * 19 5 4 47 47 H 1.09005 * 108.40056 * 31.74765 * 19 5 4 48 48 H 1.08996 * 109.84329 * 298.90283 * 20 19 5 49 49 H 1.08992 * 109.90377 * 177.94523 * 20 19 5 50 50 H 0.97008 * 119.99783 * 179.97438 * 25 24 22 51 51 H 1.09003 * 108.16404 * 213.28760 * 30 21 20 52 52 H 1.09007 * 108.16191 * 330.06466 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0458 -0.7183 -1.2696 5 6 3.4579 -1.1918 -1.0809 6 1 3.9420 -0.6269 -0.2843 7 7 4.2126 -1.0553 -2.3290 8 6 5.5592 -1.0093 -2.3007 9 8 6.1464 -1.0813 -1.2419 10 6 6.3356 -0.8683 -3.5846 11 1 6.0278 -1.5915 -4.3399 12 6 7.8490 -0.8271 -3.3710 13 6 7.7457 0.5852 -3.9076 14 6 8.4444 1.7423 -4.2291 15 6 7.7790 2.8401 -4.7349 16 6 6.4104 2.7963 -4.9250 17 6 5.7103 1.6486 -4.6061 18 6 6.3759 0.5481 -4.0992 19 6 3.3437 -2.6620 -0.6911 20 6 3.2290 -2.8954 0.7479 21 7 2.0138 -2.1567 1.2305 22 6 0.8953 -2.8406 1.6262 23 1 0.1912 -2.3789 2.3025 24 6 0.6666 -4.1271 1.1580 25 7 1.2767 -4.5501 0.0712 26 14 -0.5068 -5.2583 2.0706 27 1 -1.8800 -5.0854 1.5324 28 1 -0.0776 -6.6682 1.8882 29 1 -0.4958 -4.9206 3.5167 30 6 2.0435 -0.7232 1.2699 31 1 -0.3633 0.5191 0.8869 32 1 -0.3633 0.5086 -0.8930 33 1 -0.3633 -1.0276 0.0061 34 1 3.1243 1.4488 0.0061 35 1 1.6740 1.9552 -0.8930 36 1 1.6640 1.9586 0.8869 37 1 2.0083 -0.0292 -2.1134 38 1 1.4050 -1.5750 -1.4777 39 1 3.7431 -0.9979 -3.1759 40 1 8.1505 -0.8829 -2.3251 41 1 8.4062 -1.5066 -4.0159 42 1 9.5136 1.7827 -4.0824 43 1 8.3288 3.7360 -4.9830 44 1 5.8904 3.6559 -5.3214 45 1 4.6411 1.6109 -4.7538 46 1 4.2258 -3.1870 -1.0577 47 1 2.4645 -3.0806 -1.1810 48 1 4.1168 -2.5189 1.2558 49 1 3.1154 -3.9617 0.9430 50 1 1.1171 -5.4493 -0.2558 51 1 1.4400 -0.3940 2.1158 52 1 3.0723 -0.4094 1.4469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089476943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:53 Heat of formation + Delta-G solvation = 49.312500 kcal Electronic energy + Delta-G solvation = -31248.388472 eV Core-core repulsion = 27407.562005 eV Total energy + Delta-G solvation = -3840.826467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.10284 -39.37281 -38.01427 -35.39150 -34.52405 -34.35848 -31.54306 -30.96197 -30.50613 -27.92832 -27.38693 -26.65553 -25.51574 -25.30190 -23.34290 -22.42804 -21.54961 -20.86173 -19.85112 -19.64199 -18.00312 -17.15969 -16.82211 -16.63242 -15.83950 -15.39282 -15.06393 -14.89270 -14.38913 -14.18360 -14.07988 -13.64925 -13.44939 -13.39297 -13.20439 -12.97695 -12.69161 -12.46700 -12.32406 -12.19034 -11.99712 -11.81094 -11.64558 -11.42486 -11.21714 -11.12155 -10.86604 -10.81207 -10.68636 -10.67712 -10.56968 -10.20679 -9.99356 -9.94985 -9.69430 -9.58424 -9.47254 -9.20483 -8.97285 -8.68828 -8.60035 -8.27279 -6.67246 -5.76600 -3.14481 1.12256 1.20822 2.81733 3.38285 3.42589 3.46604 3.49479 3.64220 4.02062 4.25023 4.37851 4.52988 4.85282 4.91880 4.96302 5.14613 5.25829 5.40326 5.41790 5.43146 5.51836 5.54159 5.55534 5.65256 5.71616 5.85729 5.90143 5.98875 6.03615 6.10595 6.16752 6.19575 6.30822 6.31102 6.34142 6.40603 6.51558 6.55497 6.59478 6.67667 6.76109 6.79783 6.82112 6.93566 7.01639 7.07374 7.12697 7.25811 7.32771 7.62422 7.76761 7.86493 7.99099 8.45454 8.53252 9.21825 9.90007 10.43719 11.30419 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002990 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.004456 B = 9363.814638 C =10246.189340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.100 4.100 5 C 0.146 3.854 6 H 0.083 0.917 7 N -0.714 5.714 8 C 0.526 3.474 9 O -0.535 6.535 10 C -0.066 4.066 11 H 0.116 0.884 12 C -0.060 4.060 13 C -0.117 4.117 14 C -0.102 4.102 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.169 3.831 21 N -0.585 5.585 22 C -0.241 4.241 23 H 0.066 0.934 24 C 0.002 3.998 25 N -0.900 5.900 26 Si 0.896 3.104 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.167 3.833 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.393 0.607 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.028 0.972 47 H 0.102 0.898 48 H 0.008 0.992 49 H 0.091 0.909 50 H 0.251 0.749 51 H 0.033 0.967 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 11.809 -11.790 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.193 4.193 4 C -0.138 4.138 5 C 0.043 3.957 6 H 0.100 0.900 7 N -0.363 5.363 8 C 0.310 3.690 9 O -0.412 6.412 10 C -0.088 4.088 11 H 0.134 0.866 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.123 4.123 19 C -0.171 4.171 20 C 0.045 3.955 21 N -0.306 5.306 22 C -0.371 4.371 23 H 0.084 0.916 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.726 3.274 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C 0.037 3.963 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.227 0.773 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.120 0.880 48 H 0.026 0.974 49 H 0.109 0.891 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 10.015 11.568 -11.048 18.872 hybrid contribution -1.019 -0.493 -0.318 1.176 sum 8.996 11.075 -11.365 18.242 Atomic orbital electron populations 1.21739 0.94957 1.02725 0.99129 1.21912 0.95693 0.93642 0.98041 1.21852 1.00367 0.96629 1.00459 1.21744 0.95123 1.00311 0.96636 1.20498 0.91294 0.99091 0.84780 0.89954 1.46229 1.05884 1.73504 1.10699 1.19947 0.82728 0.76377 0.89916 1.90693 1.69171 1.49703 1.31596 1.21366 0.97037 0.94030 0.96332 0.86619 1.21750 0.93346 0.91112 1.03517 1.22388 0.95358 0.95797 0.98116 1.20537 0.99868 0.91978 0.99619 1.20973 0.94670 0.98037 0.99713 1.20999 0.94390 0.97530 1.00964 1.20223 0.99874 0.91434 0.98532 1.21283 0.96122 0.95060 0.99871 1.21321 1.02209 0.92618 1.00924 1.20089 0.85549 0.98891 0.90948 1.44262 1.11884 0.99140 1.75280 1.19151 1.00587 0.97053 1.20277 0.91624 1.24854 0.99078 0.99418 0.96260 1.69964 1.46168 1.17811 1.20588 0.86396 0.80564 0.80516 0.79878 1.21714 1.21757 1.20731 1.20502 0.97087 0.85377 0.93294 0.93930 0.94861 0.90887 0.93444 0.93791 0.93323 0.94143 0.90040 0.77326 0.86848 0.88344 0.86403 0.85786 0.85525 0.86178 0.95307 0.88017 0.97369 0.89137 0.93877 0.94879 0.95355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.27 37.16 0.31 -1.97 16 2 C -0.09 -1.59 0.76 -152.60 -0.12 -1.70 16 3 C -0.14 -2.08 8.19 37.16 0.30 -1.78 16 4 C -0.10 -1.79 4.15 -27.26 -0.11 -1.90 16 5 C 0.15 2.70 2.11 -69.61 -0.15 2.56 16 6 H 0.08 1.71 5.28 -51.93 -0.27 1.43 16 7 N -0.71 -10.99 5.01 -55.45 -0.28 -11.27 16 8 C 0.53 8.35 7.18 -10.98 -0.08 8.27 16 9 O -0.53 -10.59 15.38 5.55 0.09 -10.50 16 10 C -0.07 -0.80 4.15 -96.60 -0.40 -1.20 16 11 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.06 -0.68 7.91 -27.58 -0.22 -0.90 16 13 C -0.12 -1.37 7.32 -107.60 -0.79 -2.16 16 14 C -0.10 -1.06 10.05 -39.42 -0.40 -1.45 16 15 C -0.12 -1.08 10.03 -39.68 -0.40 -1.48 16 16 C -0.12 -1.15 10.06 -39.60 -0.40 -1.55 16 17 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 18 C -0.12 -1.47 7.05 -104.55 -0.74 -2.21 16 19 C -0.13 -2.83 4.73 -30.19 -0.14 -2.97 16 20 C 0.17 4.02 5.24 -5.20 -0.03 3.99 16 21 N -0.59 -13.97 2.60 -175.09 -0.46 -14.42 16 22 C -0.24 -6.25 8.90 -15.06 -0.13 -6.38 16 23 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 24 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 25 N -0.90 -24.10 9.43 55.49 0.52 -23.58 16 26 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C 0.17 3.46 4.01 -4.66 -0.02 3.44 16 31 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.52 7.42 -51.93 -0.39 1.14 16 34 H 0.05 0.75 7.58 -51.93 -0.39 0.36 16 35 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.63 7.63 -51.93 -0.40 0.23 16 38 H 0.08 1.70 6.64 -51.93 -0.34 1.36 16 39 H 0.39 4.99 8.46 -40.82 -0.35 4.64 16 40 H 0.11 1.46 7.02 -51.93 -0.36 1.09 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 47 H 0.10 2.44 5.28 -51.93 -0.27 2.16 16 48 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 49 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 50 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 51 H 0.03 0.69 7.84 -51.93 -0.41 0.29 16 52 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -29.34 397.50 -11.60 -40.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.45 Total: 7.42 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.98 Total: -10.72 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.21 Total: -49.27 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.34 -11.60 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.259 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds