Wall clock time and date at job start Wed Apr 1 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.24550 * 2 1 4 4 C 1.54717 * 109.47295 * 240.50120 * 2 1 3 5 5 C 1.50127 * 110.90839 * 201.10626 * 4 2 1 6 6 H 1.09001 * 110.25223 * 338.56436 * 5 4 2 7 7 N 1.46490 * 110.37471 * 216.56145 * 5 4 2 8 8 C 1.34776 * 120.00355 * 158.94545 * 7 5 4 9 9 O 1.21285 * 120.00028 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00383 * 180.02562 * 8 7 5 11 11 H 1.09001 * 112.50367 * 309.68048 * 10 8 7 12 12 C 1.52887 * 113.16728 * 179.77781 * 10 8 7 13 13 C 1.51432 * 84.72707 * 244.77748 * 12 10 8 14 14 C 1.38946 * 145.52528 * 180.02562 * 13 12 10 15 15 C 1.37974 * 120.32583 * 179.97438 * 14 13 12 16 16 C 1.38243 * 120.17437 * 0.02562 * 15 14 13 17 17 C 1.38173 * 119.75074 * 0.02562 * 16 15 14 18 18 C 1.38244 * 120.12305 * 359.97176 * 17 16 15 19 19 C 1.52529 * 105.41183 * 97.52667 * 5 4 2 20 20 C 1.46235 * 114.28285 * 270.59517 * 19 5 4 21 21 N 1.50171 * 107.52969 * 58.40729 * 20 19 5 22 22 C 1.36941 * 120.53546 * 109.57320 * 21 20 19 23 23 H 1.08000 * 119.99698 * 156.69848 * 22 21 20 24 24 C 1.38805 * 120.00127 * 336.69277 * 22 21 20 25 25 N 1.31619 * 119.99810 * 340.43402 * 24 22 21 26 26 Si 1.86798 * 120.00080 * 160.42918 * 24 22 21 27 27 H 1.48506 * 109.46850 * 90.00225 * 26 24 22 28 28 H 1.48505 * 109.47172 * 209.99866 * 26 24 22 29 29 H 1.48497 * 109.47372 * 330.00279 * 26 24 22 30 30 C 1.43429 * 118.92709 * 289.58880 * 21 20 19 31 31 H 1.08995 * 109.46949 * 300.34094 * 1 2 3 32 32 H 1.09001 * 109.47126 * 60.33746 * 1 2 3 33 33 H 1.08996 * 109.46885 * 180.34100 * 1 2 3 34 34 H 1.09006 * 109.46966 * 179.66112 * 3 2 1 35 35 H 1.08997 * 109.47211 * 299.65695 * 3 2 1 36 36 H 1.08991 * 109.46985 * 59.66105 * 3 2 1 37 37 H 1.09005 * 109.28733 * 80.65701 * 4 2 1 38 38 H 1.08994 * 109.00271 * 321.37693 * 4 2 1 39 39 H 0.97002 * 120.00181 * 338.95454 * 7 5 4 40 40 H 1.08997 * 113.98871 * 358.72336 * 12 10 8 41 41 H 1.08999 * 113.98668 * 130.83148 * 12 10 8 42 42 H 1.07998 * 119.83922 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.91721 * 180.02562 * 15 14 13 44 44 H 1.08005 * 120.12524 * 180.02562 * 16 15 14 45 45 H 1.07997 * 119.93925 * 180.02562 * 17 16 15 46 46 H 1.09000 * 108.52563 * 149.35035 * 19 5 4 47 47 H 1.09005 * 108.40056 * 31.74765 * 19 5 4 48 48 H 1.08996 * 109.84329 * 298.90283 * 20 19 5 49 49 H 1.08992 * 109.90377 * 177.94523 * 20 19 5 50 50 H 0.97008 * 119.99783 * 179.97438 * 25 24 22 51 51 H 1.09003 * 108.16404 * 213.28760 * 30 21 20 52 52 H 1.09007 * 108.16191 * 330.06466 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0458 -0.7183 -1.2696 5 6 3.4579 -1.1918 -1.0809 6 1 3.9420 -0.6269 -0.2843 7 7 4.2126 -1.0553 -2.3290 8 6 5.5592 -1.0093 -2.3007 9 8 6.1464 -1.0813 -1.2419 10 6 6.3356 -0.8683 -3.5846 11 1 6.0278 -1.5915 -4.3399 12 6 7.8490 -0.8271 -3.3710 13 6 7.7457 0.5852 -3.9076 14 6 8.4444 1.7423 -4.2291 15 6 7.7790 2.8401 -4.7349 16 6 6.4104 2.7963 -4.9250 17 6 5.7103 1.6486 -4.6061 18 6 6.3759 0.5481 -4.0992 19 6 3.3437 -2.6620 -0.6911 20 6 3.2290 -2.8954 0.7479 21 7 2.0138 -2.1567 1.2305 22 6 0.8953 -2.8406 1.6262 23 1 0.1912 -2.3789 2.3025 24 6 0.6666 -4.1271 1.1580 25 7 1.2767 -4.5501 0.0712 26 14 -0.5068 -5.2583 2.0706 27 1 -1.8800 -5.0854 1.5324 28 1 -0.0776 -6.6682 1.8882 29 1 -0.4958 -4.9206 3.5167 30 6 2.0435 -0.7232 1.2699 31 1 -0.3633 0.5191 0.8869 32 1 -0.3633 0.5086 -0.8930 33 1 -0.3633 -1.0276 0.0061 34 1 3.1243 1.4488 0.0061 35 1 1.6740 1.9552 -0.8930 36 1 1.6640 1.9586 0.8869 37 1 2.0083 -0.0292 -2.1134 38 1 1.4050 -1.5750 -1.4777 39 1 3.7431 -0.9979 -3.1759 40 1 8.1505 -0.8829 -2.3251 41 1 8.4062 -1.5066 -4.0159 42 1 9.5136 1.7827 -4.0824 43 1 8.3288 3.7360 -4.9830 44 1 5.8904 3.6559 -5.3214 45 1 4.6411 1.6109 -4.7538 46 1 4.2258 -3.1870 -1.0577 47 1 2.4645 -3.0806 -1.1810 48 1 4.1168 -2.5189 1.2558 49 1 3.1154 -3.9617 0.9430 50 1 1.1171 -5.4493 -0.2558 51 1 1.4400 -0.3940 2.1158 52 1 3.0723 -0.4094 1.4469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089476943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:50 Heat of formation + Delta-G solvation = 34.964077 kcal Electronic energy + Delta-G solvation = -31249.010666 eV Core-core repulsion = 27407.562005 eV Total energy + Delta-G solvation = -3841.448661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.08301 -40.75124 -39.39051 -36.39226 -36.13745 -35.85352 -33.29995 -32.38151 -31.63830 -29.30294 -28.43741 -28.04915 -27.31542 -26.32654 -25.02650 -23.57760 -22.84892 -21.99064 -21.51335 -20.74973 -19.44385 -18.60052 -18.31105 -17.62996 -17.25491 -16.87185 -16.27319 -16.03249 -15.82574 -15.55719 -15.39221 -15.24314 -15.03382 -14.87420 -14.21965 -13.94209 -13.90795 -13.83422 -13.59521 -13.43220 -13.25667 -13.06450 -13.02724 -12.88549 -12.86257 -12.64790 -12.51667 -12.37996 -12.26095 -11.93393 -11.91094 -11.68308 -11.57825 -11.46042 -11.39510 -11.14253 -11.01154 -10.83554 -10.46650 -9.90090 -9.75262 -9.50780 -8.62084 -7.78570 -5.17911 0.34324 0.44643 1.47314 1.51466 1.58675 1.59131 2.22267 2.56539 2.83544 3.14326 3.34524 3.43813 3.49643 3.57293 3.85769 3.98057 4.06736 4.08808 4.21329 4.23048 4.28859 4.44559 4.48008 4.54104 4.64664 4.70743 4.74590 4.78642 4.83026 4.88973 4.93096 4.95495 4.97110 5.03016 5.07618 5.11456 5.17442 5.20907 5.25754 5.32295 5.34870 5.46777 5.47563 5.53082 5.58348 5.65321 5.69164 5.74483 5.75877 5.80171 6.06949 6.08395 6.45157 6.60936 7.19941 7.28619 7.93048 8.45983 9.26227 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002990 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.004456 B = 9363.814638 C =10246.189340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.090 4.090 5 C 0.164 3.836 6 H 0.063 0.937 7 N -0.705 5.705 8 C 0.523 3.477 9 O -0.579 6.579 10 C -0.060 4.060 11 H 0.141 0.859 12 C -0.060 4.060 13 C -0.136 4.136 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.115 4.115 20 C 0.175 3.825 21 N -0.596 5.596 22 C -0.246 4.246 23 H 0.062 0.938 24 C -0.041 4.041 25 N -0.916 5.916 26 Si 0.952 3.048 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.280 1.280 30 C 0.164 3.836 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.410 0.590 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.134 0.866 46 H 0.017 0.983 47 H 0.080 0.920 48 H 0.003 0.997 49 H 0.060 0.940 50 H 0.246 0.754 51 H 0.029 0.971 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 14.354 -13.647 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.184 4.184 4 C -0.128 4.128 5 C 0.059 3.941 6 H 0.081 0.919 7 N -0.355 5.355 8 C 0.310 3.690 9 O -0.459 6.459 10 C -0.081 4.081 11 H 0.158 0.842 12 C -0.097 4.097 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.155 4.155 20 C 0.050 3.950 21 N -0.317 5.317 22 C -0.376 4.376 23 H 0.080 0.920 24 C -0.237 4.237 25 N -0.562 5.562 26 Si 0.781 3.219 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.206 1.206 30 C 0.036 3.964 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.171 0.829 45 H 0.152 0.848 46 H 0.036 0.964 47 H 0.098 0.902 48 H 0.021 0.979 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.048 0.952 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.907 14.143 -12.932 21.574 hybrid contribution -0.938 -1.224 0.293 1.569 sum 8.970 12.919 -12.640 20.177 Atomic orbital electron populations 1.21638 0.94542 1.00780 1.00811 1.21816 0.95934 0.95075 0.96088 1.21755 0.99925 0.94502 1.02207 1.21585 0.93617 0.99756 0.97825 1.20061 0.92027 0.96268 0.85733 0.91870 1.46067 1.05969 1.73164 1.10343 1.20669 0.82621 0.74863 0.90821 1.90674 1.69985 1.51551 1.33696 1.21352 0.96800 0.95380 0.94523 0.84156 1.21748 0.93113 0.92060 1.02749 1.22533 0.95784 0.96344 0.98976 1.20850 1.00909 0.91870 0.99551 1.21367 0.94972 0.98556 0.98517 1.21386 0.94671 0.97877 1.00159 1.20527 1.00814 0.91430 0.98403 1.21336 0.96487 0.95135 1.01207 1.21090 1.00446 0.94856 0.99081 1.19899 0.85502 0.97126 0.92425 1.44284 1.11230 1.00425 1.75739 1.19274 1.00787 0.97527 1.20023 0.92023 1.25424 1.00773 1.00483 0.96972 1.70103 1.47253 1.17480 1.21363 0.85526 0.78978 0.78522 0.78825 1.21488 1.22367 1.20568 1.20604 0.97038 0.83868 0.94913 0.93027 0.92369 0.94577 0.94049 0.91456 0.92201 0.90975 0.93130 0.75390 0.89104 0.85821 0.84908 0.83097 0.82934 0.84837 0.96397 0.90198 0.97897 0.92160 0.94505 0.95224 0.95679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.27 71.98 0.60 -3.50 16 2 C -0.09 -2.95 0.76 -50.95 -0.04 -2.99 16 3 C -0.13 -3.52 8.19 71.98 0.59 -2.93 16 4 C -0.09 -3.12 4.15 30.25 0.13 -2.99 16 5 C 0.16 6.06 2.11 43.91 0.09 6.15 16 6 H 0.06 2.65 5.28 -2.39 -0.01 2.63 16 7 N -0.71 -21.22 5.01 -447.72 -2.24 -23.46 16 8 C 0.52 16.53 7.18 87.66 0.63 17.16 16 9 O -0.58 -23.53 15.38 -3.05 -0.05 -23.58 16 10 C -0.06 -1.37 4.15 -14.66 -0.06 -1.43 16 11 H 0.14 2.45 8.14 -2.39 -0.02 2.44 16 12 C -0.06 -1.31 7.91 30.04 0.24 -1.07 16 13 C -0.14 -3.03 7.32 -21.79 -0.16 -3.19 16 14 C -0.11 -2.14 10.05 22.38 0.22 -1.91 16 15 C -0.12 -1.83 10.03 22.21 0.22 -1.60 16 16 C -0.12 -1.95 10.06 22.26 0.22 -1.73 16 17 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 18 C -0.14 -3.14 7.05 -19.82 -0.14 -3.28 16 19 C -0.11 -5.15 4.73 28.36 0.13 -5.01 16 20 C 0.17 8.70 5.24 83.58 0.44 9.14 16 21 N -0.60 -29.27 2.60 -707.85 -1.84 -31.11 16 22 C -0.25 -13.07 8.90 84.03 0.75 -12.32 16 23 H 0.06 3.28 7.89 -2.91 -0.02 3.25 16 24 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 25 N -0.92 -50.72 9.43 21.65 0.20 -50.52 16 26 Si 0.95 44.41 29.60 68.60 2.03 46.44 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 29 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 30 C 0.16 6.85 4.01 87.60 0.35 7.20 16 31 H 0.05 1.63 8.13 -2.39 -0.02 1.62 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.49 7.42 -2.39 -0.02 1.47 16 34 H 0.04 1.21 7.58 -2.38 -0.02 1.19 16 35 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.05 7.63 -2.38 -0.02 2.03 16 38 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 39 H 0.41 9.68 8.46 -92.71 -0.78 8.90 16 40 H 0.09 2.41 7.02 -2.39 -0.02 2.39 16 41 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 44 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.02 0.80 7.90 -2.39 -0.02 0.78 16 47 H 0.08 3.98 5.28 -2.38 -0.01 3.97 16 48 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 49 H 0.06 3.35 6.05 -2.39 -0.01 3.34 16 50 H 0.25 13.44 8.31 -92.70 -0.77 12.67 16 51 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 52 H 0.02 1.05 6.67 -2.38 -0.02 1.03 16 Total: -1.00 -66.22 397.50 3.09 -63.13 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.13 Total: 26.75 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.85 Total: -7.64 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.88 Total: -105.09 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.22 3.09 -63.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.092 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds