Wall clock time and date at job start Wed Apr 1 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.32655 * 2 1 4 4 C 1.47092 * 109.32778 * 119.65068 * 2 1 3 5 5 C 1.52565 * 114.32706 * 183.06878 * 4 2 1 6 6 H 1.08996 * 109.49248 * 34.96702 * 5 4 2 7 7 N 1.46506 * 109.49077 * 155.01994 * 5 4 2 8 8 C 1.34776 * 119.99765 * 204.99654 * 7 5 4 9 9 O 1.21286 * 120.00002 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00078 * 180.02562 * 8 7 5 11 11 H 1.08996 * 113.23131 * 47.52000 * 10 8 7 12 12 C 1.52882 * 113.99173 * 180.02562 * 10 8 7 13 13 C 1.50759 * 89.76705 * 113.94008 * 12 10 8 14 14 C 1.38230 * 149.34408 * 179.97438 * 13 12 10 15 15 C 1.38173 * 120.12763 * 180.02562 * 14 13 12 16 16 C 1.38241 * 119.74766 * 359.96508 * 15 14 13 17 17 C 1.37972 * 120.17600 * 0.04866 * 16 15 14 18 18 C 1.38362 * 90.24623 * 359.97438 * 13 12 10 19 19 C 1.50890 * 109.35490 * 274.98025 * 5 4 2 20 20 C 1.53975 * 110.10266 * 91.87986 * 19 5 4 21 21 N 1.47612 * 112.12738 * 319.45676 * 20 19 5 22 22 C 1.36931 * 118.64012 * 137.86289 * 21 20 19 23 23 H 1.08008 * 119.99717 * 205.50898 * 22 21 20 24 24 C 1.38806 * 120.00737 * 25.50779 * 22 21 20 25 25 N 1.31623 * 119.99666 * 17.92532 * 24 22 21 26 26 Si 1.86801 * 120.00637 * 197.92734 * 24 22 21 27 27 H 1.48499 * 109.46691 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47120 * 119.99912 * 26 24 22 29 29 H 1.48497 * 109.47182 * 240.00372 * 26 24 22 30 30 C 1.44573 * 122.70904 * 317.84058 * 21 20 19 31 31 H 1.08993 * 109.47483 * 300.35003 * 1 2 3 32 32 H 1.08999 * 109.47421 * 60.35431 * 1 2 3 33 33 H 1.09002 * 109.47070 * 180.34700 * 1 2 3 34 34 H 1.09005 * 109.47123 * 179.64972 * 3 2 1 35 35 H 1.09004 * 109.47133 * 299.64439 * 3 2 1 36 36 H 1.09002 * 109.47525 * 59.64741 * 3 2 1 37 37 H 1.08996 * 108.51563 * 61.80608 * 4 2 1 38 38 H 1.09008 * 108.51064 * 304.31739 * 4 2 1 39 39 H 0.96994 * 120.00382 * 24.99848 * 7 5 4 40 40 H 1.09001 * 113.16654 * 358.71731 * 12 10 8 41 41 H 1.08997 * 113.16763 * 229.16916 * 12 10 8 42 42 H 1.08000 * 119.93702 * 359.75712 * 14 13 12 43 43 H 1.08001 * 120.12919 * 179.97438 * 15 14 13 44 44 H 1.08010 * 119.90920 * 180.02562 * 16 15 14 45 45 H 1.08005 * 119.83212 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.36491 * 212.07195 * 19 5 4 47 47 H 1.08992 * 109.36848 * 331.69724 * 19 5 4 48 48 H 1.09003 * 108.96313 * 198.77326 * 20 19 5 49 49 H 1.08999 * 108.88235 * 80.08605 * 20 19 5 50 50 H 0.97008 * 120.00073 * 179.97438 * 25 24 22 51 51 H 1.09002 * 109.45559 * 330.70217 * 30 21 20 52 52 H 1.09002 * 109.44619 * 210.78692 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0363 1.4437 0.0000 4 6 2.0168 -0.6867 1.2063 5 6 3.5348 -0.6881 1.3592 6 1 3.9398 0.2485 0.9760 7 7 3.8833 -0.8284 2.7753 8 6 5.0665 -0.3674 3.2269 9 8 5.8425 0.1640 2.4611 10 6 5.4253 -0.5121 4.6834 11 1 5.2443 -1.5138 5.0732 12 6 6.7969 0.0578 5.0453 13 6 6.1289 1.1125 5.8904 14 6 6.2331 2.2089 6.7257 15 6 5.0948 2.7991 7.2407 16 6 3.8513 2.2893 6.9168 17 6 3.7461 1.1947 6.0834 18 6 4.8873 0.5973 5.5625 19 6 4.1147 -1.8436 0.5812 20 6 4.4800 -1.3914 -0.8446 21 7 3.4624 -0.4901 -1.4199 22 6 3.8805 0.6080 -2.1230 23 1 3.2419 1.4757 -2.1991 24 6 5.1249 0.6061 -2.7379 25 7 5.7498 -0.5317 -2.9552 26 14 5.9129 2.2183 -3.2569 27 1 5.0129 3.3454 -2.9034 28 1 7.2117 2.3827 -2.5560 29 1 6.1400 2.2085 -4.7243 30 6 2.0426 -0.7193 -1.2720 31 1 -0.3634 0.5192 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0062 34 1 3.1263 1.4465 0.0063 35 1 1.6769 1.9548 -0.8932 36 1 1.6666 1.9585 0.8868 37 1 1.6706 -1.7198 1.1799 38 1 1.5814 -0.2017 2.0801 39 1 3.2625 -1.2530 3.3878 40 1 7.3300 0.4693 4.1883 41 1 7.4087 -0.6328 5.6257 42 1 7.2062 2.6024 6.9798 43 1 5.1762 3.6555 7.8937 44 1 2.9598 2.7488 7.3176 45 1 2.7718 0.8007 5.8344 46 1 5.0102 -2.2060 1.0861 47 1 3.3812 -2.6481 0.5283 48 1 4.5747 -2.2708 -1.4817 49 1 5.4374 -0.8713 -0.8152 50 1 6.6194 -0.5331 -3.3853 51 1 1.8547 -1.7894 -1.1846 52 1 1.5193 -0.3296 -2.1452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089476945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:08 Heat of formation + Delta-G solvation = 48.848922 kcal Electronic energy + Delta-G solvation = -31374.831184 eV Core-core repulsion = 27533.984615 eV Total energy + Delta-G solvation = -3840.846569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.07266 -39.54867 -38.20753 -35.43492 -34.62564 -34.33387 -31.53985 -30.93998 -30.40406 -27.89211 -27.35491 -26.66423 -25.55342 -25.27896 -23.68068 -22.51636 -21.75805 -20.88495 -19.80588 -19.37713 -18.12532 -17.20034 -16.80263 -16.62004 -15.97736 -15.42495 -15.02172 -14.77717 -14.59480 -14.25762 -14.10108 -13.86162 -13.58366 -13.34356 -13.13002 -13.06708 -12.78628 -12.65004 -12.25036 -12.18574 -11.96703 -11.96237 -11.55334 -11.31902 -11.23325 -11.10804 -10.99704 -10.94735 -10.71880 -10.57782 -10.53814 -10.24673 -10.09207 -9.83757 -9.68436 -9.64610 -9.54331 -9.42653 -8.96203 -8.68298 -8.65636 -8.26934 -6.58311 -5.69097 -3.10215 1.11614 1.24008 2.79540 3.35865 3.45753 3.54656 3.55118 3.64687 4.04822 4.24719 4.38673 4.59759 4.86230 4.92312 4.94963 5.09418 5.13751 5.25646 5.41855 5.45902 5.47828 5.54164 5.57060 5.59171 5.72350 5.74144 5.86775 5.98487 6.00230 6.03611 6.16104 6.20466 6.20486 6.27045 6.29173 6.32251 6.39187 6.42172 6.52630 6.56283 6.64127 6.68601 6.80598 6.81368 6.85624 6.90096 6.98582 7.13566 7.37194 7.50499 7.78236 7.81183 7.94686 8.51669 8.56270 9.33014 10.00754 10.44668 11.38643 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.003612 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.681077 B = 7749.211614 C = 8660.321392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.096 4.096 5 C 0.149 3.851 6 H 0.109 0.891 7 N -0.723 5.723 8 C 0.526 3.474 9 O -0.520 6.520 10 C -0.072 4.072 11 H 0.120 0.880 12 C -0.057 4.057 13 C -0.117 4.117 14 C -0.094 4.094 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.090 4.090 18 C -0.120 4.120 19 C -0.147 4.147 20 C 0.182 3.818 21 N -0.587 5.587 22 C -0.257 4.257 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.893 3.107 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.292 1.292 30 C 0.169 3.831 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.391 0.609 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.077 0.923 50 H 0.251 0.749 51 H 0.031 0.969 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 -0.609 20.253 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.187 4.187 4 C -0.134 4.134 5 C 0.046 3.954 6 H 0.127 0.873 7 N -0.373 5.373 8 C 0.310 3.690 9 O -0.395 6.395 10 C -0.093 4.093 11 H 0.138 0.862 12 C -0.094 4.094 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.131 4.131 16 C -0.141 4.141 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.187 4.187 20 C 0.057 3.943 21 N -0.307 5.307 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.723 3.277 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.219 1.219 30 C 0.040 3.960 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.224 0.776 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.096 0.904 50 H 0.061 0.939 51 H 0.049 0.951 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.839 -0.265 19.583 20.174 hybrid contribution 0.005 0.562 0.160 0.584 sum -4.834 0.297 19.743 20.329 Atomic orbital electron populations 1.21797 0.95693 1.00672 1.00919 1.20454 0.93856 0.97338 0.97972 1.21927 1.03570 0.94290 0.98955 1.20588 0.94245 1.00299 0.98237 1.20655 0.94748 1.02011 0.77967 0.87279 1.46266 1.18647 1.60956 1.11412 1.19819 0.82137 0.78513 0.88509 1.90783 1.49305 1.42227 1.57149 1.21397 0.96913 0.98740 0.92288 0.86187 1.21503 0.95438 0.93942 0.98563 1.21737 0.97571 0.95706 0.96716 1.20184 0.98854 0.94876 0.97326 1.21035 0.92252 0.99787 1.00046 1.20935 0.97779 0.96522 0.98875 1.20556 0.97512 0.95774 0.96950 1.21850 0.94511 0.97520 0.98212 1.22449 0.99615 0.96786 0.99828 1.20947 0.93180 0.93538 0.86673 1.43651 0.98980 1.28327 1.59785 1.19296 1.01330 0.92549 1.25454 0.91224 1.24966 0.99690 0.96234 0.98296 1.70088 1.15681 1.23629 1.45135 0.86363 0.79652 0.84037 0.77598 1.20293 1.21556 1.21948 1.20711 0.86124 0.95685 0.93468 0.93804 0.92825 0.93426 0.89924 0.93454 0.95575 0.92901 0.93366 0.77638 0.87274 0.88900 0.86204 0.85570 0.85715 0.86418 0.92673 0.93663 0.95699 0.90430 0.93868 0.95105 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.38 37.16 0.31 -1.53 16 2 C -0.09 -1.56 0.72 -156.37 -0.11 -1.67 16 3 C -0.13 -2.43 6.77 37.16 0.25 -2.18 16 4 C -0.10 -1.47 3.40 -29.79 -0.10 -1.57 16 5 C 0.15 2.62 1.98 -69.21 -0.14 2.49 16 6 H 0.11 2.42 4.73 -51.93 -0.25 2.18 16 7 N -0.72 -10.43 4.93 -55.06 -0.27 -10.70 16 8 C 0.53 8.38 7.21 -10.99 -0.08 8.30 16 9 O -0.52 -10.91 15.38 5.55 0.09 -10.82 16 10 C -0.07 -0.86 4.47 -92.63 -0.41 -1.27 16 11 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.06 -0.68 7.54 -31.55 -0.24 -0.91 16 13 C -0.12 -1.43 7.60 -104.55 -0.79 -2.23 16 14 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 15 C -0.11 -1.10 10.06 -39.60 -0.40 -1.50 16 16 C -0.12 -1.22 10.03 -39.68 -0.40 -1.61 16 17 C -0.09 -0.99 10.05 -39.42 -0.40 -1.38 16 18 C -0.12 -1.47 6.83 -107.59 -0.73 -2.20 16 19 C -0.15 -2.82 5.39 -27.28 -0.15 -2.96 16 20 C 0.18 4.39 4.68 -2.92 -0.01 4.37 16 21 N -0.59 -14.11 1.86 -172.07 -0.32 -14.43 16 22 C -0.26 -6.88 7.63 -15.06 -0.11 -7.00 16 23 H 0.07 1.85 6.43 -52.48 -0.34 1.51 16 24 C 0.01 0.19 4.81 -17.43 -0.08 0.11 16 25 N -0.90 -26.47 11.10 55.49 0.62 -25.85 16 26 Si 0.89 22.46 29.59 -169.99 -5.03 17.43 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 C 0.17 3.40 4.70 -4.09 -0.02 3.38 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.82 4.45 -51.93 -0.23 1.59 16 35 H 0.05 0.89 7.49 -51.93 -0.39 0.50 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 38 H 0.05 0.67 8.01 -51.92 -0.42 0.25 16 39 H 0.39 4.28 8.60 -40.82 -0.35 3.92 16 40 H 0.11 1.52 7.04 -51.93 -0.37 1.16 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.05 1.06 7.85 -51.93 -0.41 0.66 16 47 H 0.04 0.79 7.32 -51.93 -0.38 0.41 16 48 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 49 H 0.08 2.17 6.33 -51.93 -0.33 1.84 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 51 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 52 H 0.05 0.96 7.95 -51.93 -0.41 0.55 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -31.99 395.48 -11.42 -43.42 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.45 Total: 5.80 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -4.02 Total: -10.80 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.03 Total: -50.98 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.99 -11.42 -43.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.265 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds