Wall clock time and date at job start Wed Apr 1 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.32655 * 2 1 4 4 C 1.47092 * 109.32778 * 119.65068 * 2 1 3 5 5 C 1.52565 * 114.32706 * 183.06878 * 4 2 1 6 6 H 1.08996 * 109.49248 * 34.96702 * 5 4 2 7 7 N 1.46506 * 109.49077 * 155.01994 * 5 4 2 8 8 C 1.34776 * 119.99765 * 204.99654 * 7 5 4 9 9 O 1.21286 * 120.00002 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00078 * 180.02562 * 8 7 5 11 11 H 1.08996 * 113.23131 * 47.52000 * 10 8 7 12 12 C 1.52882 * 113.99173 * 180.02562 * 10 8 7 13 13 C 1.50759 * 89.76705 * 113.94008 * 12 10 8 14 14 C 1.38230 * 149.34408 * 179.97438 * 13 12 10 15 15 C 1.38173 * 120.12763 * 180.02562 * 14 13 12 16 16 C 1.38241 * 119.74766 * 359.96508 * 15 14 13 17 17 C 1.37972 * 120.17600 * 0.04866 * 16 15 14 18 18 C 1.38362 * 90.24623 * 359.97438 * 13 12 10 19 19 C 1.50890 * 109.35490 * 274.98025 * 5 4 2 20 20 C 1.53975 * 110.10266 * 91.87986 * 19 5 4 21 21 N 1.47612 * 112.12738 * 319.45676 * 20 19 5 22 22 C 1.36931 * 118.64012 * 137.86289 * 21 20 19 23 23 H 1.08008 * 119.99717 * 205.50898 * 22 21 20 24 24 C 1.38806 * 120.00737 * 25.50779 * 22 21 20 25 25 N 1.31623 * 119.99666 * 17.92532 * 24 22 21 26 26 Si 1.86801 * 120.00637 * 197.92734 * 24 22 21 27 27 H 1.48499 * 109.46691 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47120 * 119.99912 * 26 24 22 29 29 H 1.48497 * 109.47182 * 240.00372 * 26 24 22 30 30 C 1.44573 * 122.70904 * 317.84058 * 21 20 19 31 31 H 1.08993 * 109.47483 * 300.35003 * 1 2 3 32 32 H 1.08999 * 109.47421 * 60.35431 * 1 2 3 33 33 H 1.09002 * 109.47070 * 180.34700 * 1 2 3 34 34 H 1.09005 * 109.47123 * 179.64972 * 3 2 1 35 35 H 1.09004 * 109.47133 * 299.64439 * 3 2 1 36 36 H 1.09002 * 109.47525 * 59.64741 * 3 2 1 37 37 H 1.08996 * 108.51563 * 61.80608 * 4 2 1 38 38 H 1.09008 * 108.51064 * 304.31739 * 4 2 1 39 39 H 0.96994 * 120.00382 * 24.99848 * 7 5 4 40 40 H 1.09001 * 113.16654 * 358.71731 * 12 10 8 41 41 H 1.08997 * 113.16763 * 229.16916 * 12 10 8 42 42 H 1.08000 * 119.93702 * 359.75712 * 14 13 12 43 43 H 1.08001 * 120.12919 * 179.97438 * 15 14 13 44 44 H 1.08010 * 119.90920 * 180.02562 * 16 15 14 45 45 H 1.08005 * 119.83212 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.36491 * 212.07195 * 19 5 4 47 47 H 1.08992 * 109.36848 * 331.69724 * 19 5 4 48 48 H 1.09003 * 108.96313 * 198.77326 * 20 19 5 49 49 H 1.08999 * 108.88235 * 80.08605 * 20 19 5 50 50 H 0.97008 * 120.00073 * 179.97438 * 25 24 22 51 51 H 1.09002 * 109.45559 * 330.70217 * 30 21 20 52 52 H 1.09002 * 109.44619 * 210.78692 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0363 1.4437 0.0000 4 6 2.0168 -0.6867 1.2063 5 6 3.5348 -0.6881 1.3592 6 1 3.9398 0.2485 0.9760 7 7 3.8833 -0.8284 2.7753 8 6 5.0665 -0.3674 3.2269 9 8 5.8425 0.1640 2.4611 10 6 5.4253 -0.5121 4.6834 11 1 5.2443 -1.5138 5.0732 12 6 6.7969 0.0578 5.0453 13 6 6.1289 1.1125 5.8904 14 6 6.2331 2.2089 6.7257 15 6 5.0948 2.7991 7.2407 16 6 3.8513 2.2893 6.9168 17 6 3.7461 1.1947 6.0834 18 6 4.8873 0.5973 5.5625 19 6 4.1147 -1.8436 0.5812 20 6 4.4800 -1.3914 -0.8446 21 7 3.4624 -0.4901 -1.4199 22 6 3.8805 0.6080 -2.1230 23 1 3.2419 1.4757 -2.1991 24 6 5.1249 0.6061 -2.7379 25 7 5.7498 -0.5317 -2.9552 26 14 5.9129 2.2183 -3.2569 27 1 5.0129 3.3454 -2.9034 28 1 7.2117 2.3827 -2.5560 29 1 6.1400 2.2085 -4.7243 30 6 2.0426 -0.7193 -1.2720 31 1 -0.3634 0.5192 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0062 34 1 3.1263 1.4465 0.0063 35 1 1.6769 1.9548 -0.8932 36 1 1.6666 1.9585 0.8868 37 1 1.6706 -1.7198 1.1799 38 1 1.5814 -0.2017 2.0801 39 1 3.2625 -1.2530 3.3878 40 1 7.3300 0.4693 4.1883 41 1 7.4087 -0.6328 5.6257 42 1 7.2062 2.6024 6.9798 43 1 5.1762 3.6555 7.8937 44 1 2.9598 2.7488 7.3176 45 1 2.7718 0.8007 5.8344 46 1 5.0102 -2.2060 1.0861 47 1 3.3812 -2.6481 0.5283 48 1 4.5747 -2.2708 -1.4817 49 1 5.4374 -0.8713 -0.8152 50 1 6.6194 -0.5331 -3.3853 51 1 1.8547 -1.7894 -1.1846 52 1 1.5193 -0.3296 -2.1452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089476945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:03 Heat of formation + Delta-G solvation = 31.178060 kcal Electronic energy + Delta-G solvation = -31375.597450 eV Core-core repulsion = 27533.984615 eV Total energy + Delta-G solvation = -3841.612835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -42.06708 -40.88120 -39.53387 -36.47275 -36.16723 -35.87492 -33.29336 -32.27030 -31.63833 -29.11178 -28.42380 -28.20444 -27.21343 -26.38470 -25.34805 -23.80659 -22.92385 -21.96102 -21.16148 -20.74702 -19.52988 -18.61878 -18.32168 -17.63791 -17.38614 -16.70738 -16.26599 -16.24532 -15.77080 -15.69182 -15.52447 -15.29867 -15.06343 -14.85685 -14.51985 -14.01629 -13.89719 -13.82906 -13.60341 -13.40689 -13.14805 -13.10571 -12.95809 -12.87549 -12.75663 -12.72284 -12.58581 -12.43252 -12.24267 -12.00397 -11.95123 -11.79203 -11.46220 -11.41330 -11.36984 -11.26363 -11.04346 -10.91487 -10.39791 -10.03356 -9.77026 -9.52975 -8.60395 -7.83277 -5.24374 0.30570 0.44427 1.38520 1.43775 1.50364 1.58330 2.19344 2.51207 2.82067 3.14220 3.30920 3.42014 3.46626 3.68710 3.79317 3.90786 4.01891 4.17365 4.20067 4.20560 4.27560 4.36357 4.46766 4.60987 4.63822 4.69741 4.72517 4.78630 4.86025 4.89895 4.90926 4.93167 4.97016 5.00114 5.00671 5.10642 5.11182 5.15107 5.23975 5.32036 5.37936 5.44984 5.48063 5.56103 5.56136 5.60864 5.68966 5.73467 5.74317 5.81129 5.85710 6.05215 6.44256 6.62845 7.21878 7.33963 8.00135 8.37966 9.22185 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.003612 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.681077 B = 7749.211614 C = 8660.321392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.125 4.125 4 C -0.093 4.093 5 C 0.157 3.843 6 H 0.061 0.939 7 N -0.705 5.705 8 C 0.522 3.478 9 O -0.581 6.581 10 C -0.061 4.061 11 H 0.157 0.843 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.132 4.132 20 C 0.196 3.804 21 N -0.596 5.596 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.944 3.056 27 H -0.267 1.267 28 H -0.303 1.303 29 H -0.289 1.289 30 C 0.162 3.838 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.136 0.864 46 H 0.048 0.952 47 H 0.073 0.927 48 H -0.005 1.005 49 H 0.027 0.973 50 H 0.243 0.757 51 H 0.044 0.956 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 -0.675 23.520 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.182 4.182 4 C -0.130 4.130 5 C 0.053 3.947 6 H 0.079 0.921 7 N -0.356 5.356 8 C 0.308 3.692 9 O -0.460 6.460 10 C -0.082 4.082 11 H 0.174 0.826 12 C -0.097 4.097 13 C -0.142 4.142 14 C -0.127 4.127 15 C -0.132 4.132 16 C -0.144 4.144 17 C -0.118 4.118 18 C -0.137 4.137 19 C -0.172 4.172 20 C 0.070 3.930 21 N -0.318 5.318 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.774 3.226 27 H -0.191 1.191 28 H -0.230 1.230 29 H -0.216 1.216 30 C 0.035 3.965 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.154 0.846 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.013 0.987 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.287 -0.340 22.894 24.350 hybrid contribution 1.015 0.636 -0.811 1.447 sum -7.271 0.295 22.082 23.251 Atomic orbital electron populations 1.21724 0.92395 1.02325 1.01885 1.20315 0.96285 0.95468 0.96500 1.21828 1.00913 0.96047 0.99438 1.20538 0.91994 1.01977 0.98518 1.20287 0.96336 0.98738 0.79330 0.92080 1.46009 1.18732 1.60449 1.10442 1.20576 0.81568 0.77093 0.89920 1.90771 1.51191 1.44879 1.59187 1.21350 0.96852 1.00777 0.89179 0.82579 1.21500 0.95695 0.94727 0.97821 1.21931 0.97953 0.96619 0.97730 1.20514 1.00212 0.94666 0.97297 1.21433 0.91859 1.00190 0.99737 1.21342 0.98883 0.96029 0.98185 1.20876 0.97898 0.96041 0.96950 1.21898 0.95082 0.97895 0.98813 1.22240 1.00242 0.98124 0.96552 1.20580 0.91546 0.91557 0.89320 1.43769 1.00747 1.27573 1.59663 1.19552 1.00956 0.93326 1.23566 0.91163 1.25589 1.00756 0.98452 0.99846 1.70224 1.15678 1.25124 1.47112 0.85533 0.78312 0.81675 0.77063 1.19110 1.23031 1.21644 1.20953 0.83491 0.96966 0.95065 0.91660 0.93135 0.91466 0.94008 0.94518 0.93421 0.90398 0.90491 0.74898 0.90488 0.86310 0.84937 0.82898 0.83039 0.84591 0.93332 0.90868 0.98687 0.95450 0.94726 0.93755 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.38 71.98 0.60 -2.31 16 2 C -0.08 -2.56 0.72 -53.38 -0.04 -2.60 16 3 C -0.12 -4.53 6.77 71.98 0.49 -4.04 16 4 C -0.09 -2.51 3.40 28.61 0.10 -2.41 16 5 C 0.16 5.40 1.98 44.16 0.09 5.49 16 6 H 0.06 2.79 4.73 -2.39 -0.01 2.78 16 7 N -0.71 -19.10 4.93 -446.49 -2.20 -21.30 16 8 C 0.52 16.60 7.21 87.66 0.63 17.23 16 9 O -0.58 -25.83 15.38 -3.05 -0.05 -25.88 16 10 C -0.06 -1.37 4.47 -12.09 -0.05 -1.43 16 11 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.06 -1.43 7.54 27.47 0.21 -1.22 16 13 C -0.14 -3.39 7.60 -19.82 -0.15 -3.54 16 14 C -0.11 -2.22 10.04 22.25 0.22 -2.00 16 15 C -0.11 -1.93 10.06 22.25 0.22 -1.71 16 16 C -0.13 -2.10 10.03 22.21 0.22 -1.88 16 17 C -0.10 -1.91 10.05 22.38 0.22 -1.69 16 18 C -0.14 -3.09 6.83 -21.79 -0.15 -3.24 16 19 C -0.13 -5.05 5.39 30.24 0.16 -4.89 16 20 C 0.20 9.91 4.68 86.50 0.40 10.32 16 21 N -0.60 -29.51 1.86 -698.30 -1.30 -30.80 16 22 C -0.24 -13.55 7.63 84.03 0.64 -12.91 16 23 H 0.07 3.83 6.43 -2.91 -0.02 3.81 16 24 C -0.05 -3.04 4.81 84.86 0.41 -2.63 16 25 N -0.93 -58.23 11.10 21.65 0.24 -57.99 16 26 Si 0.94 48.38 29.59 68.60 2.03 50.41 16 27 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 28 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 29 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 30 C 0.16 6.37 4.70 87.38 0.41 6.78 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.88 4.45 -2.38 -0.01 1.86 16 35 H 0.04 1.36 7.49 -2.38 -0.02 1.34 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.81 7.36 -2.39 -0.02 1.79 16 38 H 0.08 1.72 8.01 -2.38 -0.02 1.70 16 39 H 0.41 7.47 8.60 -92.71 -0.80 6.67 16 40 H 0.08 2.32 7.04 -2.39 -0.02 2.31 16 41 H 0.12 2.05 8.14 -2.39 -0.02 2.04 16 42 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 47 H 0.07 2.40 7.32 -2.39 -0.02 2.38 16 48 H 0.00 -0.27 8.05 -2.39 -0.02 -0.29 16 49 H 0.03 1.64 6.33 -2.39 -0.02 1.62 16 50 H 0.24 14.90 8.31 -92.70 -0.77 14.13 16 51 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 52 H 0.04 1.48 7.95 -2.39 -0.02 1.46 16 Total: -1.00 -77.12 395.48 3.49 -73.63 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.12 Total: 20.61 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.64 Total: -8.68 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.26 Total: -110.09 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -77.12 3.49 -73.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.807 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds