Wall clock time and date at job start Wed Apr 1 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.24604 * 2 1 4 4 C 1.54641 * 109.42418 * 240.44530 * 2 1 3 5 5 C 1.50123 * 110.92646 * 201.05573 * 4 2 1 6 6 H 1.08999 * 110.25268 * 338.45703 * 5 4 2 7 7 N 1.46500 * 110.25016 * 216.54575 * 5 4 2 8 8 C 1.34776 * 120.00439 * 156.93486 * 7 5 4 9 9 O 1.21286 * 119.99518 * 359.73015 * 8 7 5 10 10 C 1.50702 * 120.00259 * 179.97438 * 8 7 5 11 11 H 1.09005 * 112.50446 * 50.05223 * 10 8 7 12 12 C 1.52885 * 113.16393 * 179.97438 * 10 8 7 13 13 C 1.51434 * 84.72697 * 115.22591 * 12 10 8 14 14 C 1.38947 * 145.52487 * 179.97438 * 13 12 10 15 15 C 1.37978 * 120.32185 * 180.02562 * 14 13 12 16 16 C 1.38240 * 120.17846 * 0.02562 * 15 14 13 17 17 C 1.38175 * 119.74817 * 0.02562 * 16 15 14 18 18 C 1.38242 * 120.12364 * 359.97438 * 17 16 15 19 19 C 1.52532 * 105.53992 * 97.50343 * 5 4 2 20 20 C 1.46233 * 114.27487 * 270.66374 * 19 5 4 21 21 N 1.50169 * 107.53479 * 58.40817 * 20 19 5 22 22 C 1.36933 * 120.53999 * 109.61071 * 21 20 19 23 23 H 1.08004 * 120.00147 * 320.01317 * 22 21 20 24 24 C 1.38816 * 120.00109 * 140.01486 * 22 21 20 25 25 N 1.31618 * 119.99835 * 156.55060 * 24 22 21 26 26 Si 1.86791 * 120.00141 * 336.54941 * 24 22 21 27 27 H 1.48504 * 109.47022 * 95.56665 * 26 24 22 28 28 H 1.48494 * 109.47427 * 215.56920 * 26 24 22 29 29 H 1.48503 * 109.47084 * 335.57048 * 26 24 22 30 30 C 1.43438 * 118.92359 * 289.58586 * 21 20 19 31 31 H 1.08998 * 109.46800 * 300.33713 * 1 2 3 32 32 H 1.08999 * 109.47359 * 60.33783 * 1 2 3 33 33 H 1.08997 * 109.47052 * 180.34115 * 1 2 3 34 34 H 1.08999 * 109.47386 * 179.65610 * 3 2 1 35 35 H 1.08997 * 109.47303 * 299.66121 * 3 2 1 36 36 H 1.09005 * 109.46630 * 59.66444 * 3 2 1 37 37 H 1.09002 * 109.23668 * 80.62453 * 4 2 1 38 38 H 1.08998 * 109.06320 * 321.37522 * 4 2 1 39 39 H 0.97006 * 119.99666 * 336.93307 * 7 5 4 40 40 H 1.08994 * 113.98992 * 229.16790 * 12 10 8 41 41 H 1.08993 * 113.99290 * 1.28257 * 12 10 8 42 42 H 1.07999 * 119.84217 * 0.03256 * 14 13 12 43 43 H 1.08001 * 119.91015 * 180.02562 * 15 14 13 44 44 H 1.08004 * 120.12820 * 180.02562 * 16 15 14 45 45 H 1.07999 * 119.93662 * 179.97438 * 17 16 15 46 46 H 1.09003 * 108.51775 * 31.90154 * 19 5 4 47 47 H 1.08994 * 108.52104 * 149.57230 * 19 5 4 48 48 H 1.09005 * 109.84590 * 177.91471 * 20 19 5 49 49 H 1.09005 * 109.84588 * 298.82885 * 20 19 5 50 50 H 0.97002 * 119.99910 * 180.02562 * 25 24 22 51 51 H 1.08994 * 108.15855 * 213.28332 * 30 21 20 52 52 H 1.08997 * 108.16246 * 329.85328 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0442 -0.7194 -1.2686 5 6 3.4567 -1.1924 -1.0815 6 1 3.9424 -0.6252 -0.2875 7 7 4.2069 -1.0564 -2.3324 8 6 5.5516 -0.9685 -2.3057 9 8 6.1401 -0.9972 -1.2456 10 6 6.3233 -0.8292 -3.5926 11 1 5.9320 -0.0363 -4.2300 12 6 7.8350 -0.7423 -3.3809 13 6 7.8745 -2.0592 -4.1275 14 6 8.6873 -3.0733 -4.6190 15 6 8.1352 -4.1452 -5.2897 16 6 6.7676 -4.2174 -5.4781 17 6 5.9545 -3.2112 -4.9924 18 6 6.5067 -2.1367 -4.3202 19 6 3.3468 -2.6622 -0.6890 20 6 3.2340 -2.8932 0.7506 21 7 2.0174 -2.1569 1.2331 22 6 0.9015 -2.8429 1.6319 23 1 0.5789 -3.7152 1.0829 24 6 0.1848 -2.4171 2.7419 25 7 -1.0839 -2.7429 2.8706 26 14 1.0209 -1.3820 4.0528 27 1 0.7597 0.0560 3.7892 28 1 0.4835 -1.7460 5.3884 29 1 2.4843 -1.6328 4.0228 30 6 2.0435 -0.7232 1.2699 31 1 -0.3633 0.5191 0.8869 32 1 -0.3634 0.5086 -0.8930 33 1 -0.3633 -1.0276 0.0061 34 1 3.1243 1.4489 0.0062 35 1 1.6740 1.9552 -0.8930 36 1 1.6640 1.9586 0.8870 37 1 2.0056 -0.0306 -2.1126 38 1 1.4036 -1.5764 -1.4763 39 1 3.7359 -1.0296 -3.1800 40 1 8.3101 0.0826 -3.9118 41 1 8.1412 -0.8151 -2.3374 42 1 9.7565 -3.0223 -4.4752 43 1 8.7731 -4.9300 -5.6686 44 1 6.3362 -5.0570 -6.0029 45 1 4.8858 -3.2643 -5.1382 46 1 2.4695 -3.0863 -1.1775 47 1 4.2311 -3.1849 -1.0532 48 1 3.1229 -3.9598 0.9466 49 1 4.1220 -2.5146 1.2568 50 1 -1.5849 -2.4450 3.6461 51 1 1.4400 -0.3941 2.1157 52 1 3.0710 -0.4066 1.4490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089476947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:17 Heat of formation + Delta-G solvation = 50.607176 kcal Electronic energy + Delta-G solvation = -31143.450263 eV Core-core repulsion = 27302.679938 eV Total energy + Delta-G solvation = -3840.770326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -41.24052 -39.62916 -38.24288 -35.52679 -34.81767 -34.32896 -32.30885 -31.09245 -30.61814 -28.12861 -27.59284 -26.65892 -25.63671 -25.45175 -23.73518 -22.54720 -21.62773 -20.96618 -20.05847 -19.82893 -18.45723 -17.43416 -16.93123 -16.49236 -16.16097 -15.51148 -15.19815 -14.97464 -14.80997 -14.47740 -14.23326 -13.91362 -13.63891 -13.34468 -13.26625 -13.13838 -12.77505 -12.68569 -12.49512 -12.30705 -12.14532 -12.10490 -11.94052 -11.82886 -11.50068 -11.30130 -11.21280 -10.88905 -10.77462 -10.68626 -10.51253 -10.40537 -10.30730 -10.02123 -9.80263 -9.72225 -9.65960 -9.44700 -9.04896 -8.82134 -8.77126 -8.41035 -6.69534 -5.98725 -3.40054 1.04483 1.13931 2.60323 3.20299 3.35430 3.50038 3.53916 3.58220 3.89933 4.15918 4.24096 4.56559 4.74492 4.80339 4.85796 4.90836 4.97853 5.21547 5.29736 5.31507 5.33826 5.36017 5.42243 5.46826 5.62342 5.67485 5.75130 5.77023 5.83196 5.87654 6.05419 6.09524 6.13225 6.17495 6.23386 6.25312 6.26339 6.35228 6.41998 6.45837 6.53229 6.57707 6.71211 6.72464 6.73451 6.77440 6.82684 6.88952 6.97007 7.04481 7.29256 7.59967 8.11878 8.28804 8.38906 9.04962 9.74841 10.20976 11.16597 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002924 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.316214 B = 9573.485395 C = 9941.745241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.102 4.102 5 C 0.149 3.851 6 H 0.094 0.906 7 N -0.717 5.717 8 C 0.526 3.474 9 O -0.532 6.532 10 C -0.065 4.065 11 H 0.116 0.884 12 C -0.061 4.061 13 C -0.117 4.117 14 C -0.102 4.102 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.136 4.136 20 C 0.139 3.861 21 N -0.598 5.598 22 C -0.264 4.264 23 H 0.074 0.926 24 C 0.045 3.955 25 N -0.896 5.896 26 Si 0.870 3.130 27 H -0.285 1.285 28 H -0.302 1.302 29 H -0.269 1.269 30 C 0.157 3.843 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.396 0.604 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.068 0.932 49 H 0.033 0.967 50 H 0.262 0.738 51 H 0.044 0.956 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.902 3.965 -18.362 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.196 4.196 4 C -0.140 4.140 5 C 0.046 3.954 6 H 0.112 0.888 7 N -0.367 5.367 8 C 0.311 3.689 9 O -0.409 6.409 10 C -0.086 4.086 11 H 0.134 0.866 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.176 4.176 20 C 0.015 3.985 21 N -0.320 5.320 22 C -0.392 4.392 23 H 0.092 0.908 24 C -0.156 4.156 25 N -0.537 5.537 26 Si 0.700 3.300 27 H -0.213 1.213 28 H -0.230 1.230 29 H -0.194 1.194 30 C 0.029 3.971 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.051 0.949 50 H 0.072 0.928 51 H 0.062 0.938 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.159 3.880 -17.458 23.444 hybrid contribution -0.018 0.534 0.265 0.596 sum 15.141 4.414 -17.193 23.331 Atomic orbital electron populations 1.21731 0.94033 1.03463 0.99292 1.21792 0.96417 0.93690 0.96785 1.21876 1.00303 0.96479 1.00941 1.21742 0.94335 1.00486 0.97453 1.20380 0.92135 0.97459 0.85454 0.88846 1.46222 1.06186 1.73944 1.10320 1.20029 0.82573 0.76218 0.90057 1.90709 1.68899 1.49610 1.31652 1.21339 0.97353 0.95478 0.94471 0.86644 1.21747 0.92621 0.93338 1.02034 1.22352 0.94979 0.96527 0.97854 1.20543 0.99643 0.93339 0.98435 1.20996 0.95323 0.97826 0.99076 1.21021 0.93677 0.98486 1.00568 1.20228 1.00032 0.92353 0.97320 1.21233 0.96301 0.95892 0.99170 1.21283 1.00871 0.95276 1.00141 1.20380 0.89368 0.97243 0.91553 1.44188 1.11861 0.99841 1.76112 1.18649 1.00420 1.12497 1.07665 0.90818 1.25477 0.95445 0.97635 0.97054 1.69883 1.06680 1.47580 1.29534 0.87018 0.81146 0.79719 0.82143 1.21335 1.23031 1.19413 1.20770 0.97278 0.84881 0.94149 0.93609 0.94881 0.90328 0.93349 0.93347 0.93075 0.93214 0.90671 0.77043 0.88333 0.86885 0.86366 0.85700 0.85412 0.86113 0.91778 0.93597 0.91383 0.94889 0.92792 0.93810 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.28 37.16 0.31 -2.14 16 2 C -0.08 -1.49 0.76 -152.64 -0.12 -1.61 16 3 C -0.14 -2.14 8.19 37.16 0.30 -1.83 16 4 C -0.10 -1.60 4.14 -27.30 -0.11 -1.72 16 5 C 0.15 2.35 2.13 -69.60 -0.15 2.21 16 6 H 0.09 1.71 5.23 -51.93 -0.27 1.44 16 7 N -0.72 -9.11 4.98 -55.44 -0.28 -9.39 16 8 C 0.53 7.17 7.26 -10.98 -0.08 7.09 16 9 O -0.53 -9.39 15.35 5.55 0.09 -9.31 16 10 C -0.07 -0.66 4.14 -96.60 -0.40 -1.06 16 11 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 12 C -0.06 -0.59 7.91 -27.58 -0.22 -0.81 16 13 C -0.12 -1.25 7.32 -107.60 -0.79 -2.04 16 14 C -0.10 -0.98 10.05 -39.41 -0.40 -1.38 16 15 C -0.11 -1.00 10.03 -39.68 -0.40 -1.40 16 16 C -0.12 -1.07 10.06 -39.60 -0.40 -1.47 16 17 C -0.08 -0.81 10.04 -39.60 -0.40 -1.20 16 18 C -0.13 -1.35 7.06 -104.55 -0.74 -2.09 16 19 C -0.14 -2.36 4.91 -30.19 -0.15 -2.51 16 20 C 0.14 2.82 6.11 -5.21 -0.03 2.78 16 21 N -0.60 -13.80 2.13 -175.08 -0.37 -14.17 16 22 C -0.26 -7.08 9.24 -15.06 -0.14 -7.22 16 23 H 0.07 2.15 8.06 -52.48 -0.42 1.72 16 24 C 0.05 1.26 5.28 -17.43 -0.09 1.17 16 25 N -0.90 -26.57 13.97 55.49 0.78 -25.79 16 26 Si 0.87 22.31 25.26 -169.99 -4.29 18.02 16 27 H -0.29 -7.15 6.74 56.52 0.38 -6.77 16 28 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 29 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.16 3.39 3.04 -4.66 -0.01 3.38 16 31 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.75 7.45 -51.93 -0.39 1.37 16 34 H 0.05 0.73 7.57 -51.93 -0.39 0.33 16 35 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.66 7.64 -51.93 -0.40 0.27 16 38 H 0.07 1.29 6.66 -51.93 -0.35 0.95 16 39 H 0.40 3.91 8.49 -40.82 -0.35 3.56 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 1.29 7.02 -51.93 -0.36 0.92 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.06 1.14 6.94 -51.93 -0.36 0.78 16 47 H 0.05 0.79 7.96 -51.93 -0.41 0.37 16 48 H 0.07 1.38 7.99 -51.93 -0.42 0.97 16 49 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.04 1.05 3.25 -51.93 -0.17 0.88 16 52 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -31.75 397.02 -10.54 -42.29 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.44 Total: 4.21 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -4.00 Total: -11.85 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.13 Total: -49.35 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.29 Total: 18.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.75 -10.54 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089476947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.898 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds