Wall clock time and date at job start Wed Apr 1 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.52598 * 2 1 4 4 C 1.53042 * 109.50012 * 120.08142 * 2 1 3 5 5 C 1.53040 * 109.53928 * 58.58297 * 4 2 1 6 6 C 1.53189 * 109.30998 * 61.36959 * 5 4 2 7 7 H 1.09003 * 109.70635 * 65.22109 * 6 5 4 8 8 C 1.52999 * 109.58632 * 185.57633 * 6 5 4 9 9 N 1.46508 * 109.47000 * 179.41474 * 8 6 5 10 10 C 1.34773 * 119.99822 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.50695 * 120.00273 * 179.97438 * 10 9 8 13 13 H 1.09007 * 112.50785 * 309.67605 * 12 10 9 14 14 C 1.52877 * 113.17114 * 179.84136 * 12 10 9 15 15 C 1.51599 * 84.67568 * 244.77711 * 14 12 10 16 16 C 1.38952 * 145.53565 * 180.02562 * 15 14 12 17 17 C 1.37969 * 120.32304 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.17918 * 359.97438 * 17 16 15 19 19 C 1.38178 * 119.74522 * 359.97438 * 18 17 16 20 20 C 1.38227 * 120.12679 * 0.02562 * 19 18 17 21 21 N 1.46930 * 108.77770 * 305.36523 * 6 5 4 22 22 C 1.36938 * 120.63156 * 233.58772 * 21 6 5 23 23 H 1.08004 * 119.99684 * 49.61814 * 22 21 6 24 24 C 1.38809 * 120.00035 * 229.62495 * 22 21 6 25 25 N 1.31614 * 120.00343 * 188.88644 * 24 22 21 26 26 Si 1.86802 * 119.99797 * 8.61320 * 24 22 21 27 27 H 1.48496 * 109.47187 * 84.41186 * 26 24 22 28 28 H 1.48498 * 109.46866 * 204.41454 * 26 24 22 29 29 H 1.48501 * 109.47172 * 324.41136 * 26 24 22 30 30 C 1.46921 * 118.73761 * 53.85892 * 21 6 5 31 31 H 1.08994 * 109.47283 * 299.92054 * 1 2 3 32 32 H 1.08995 * 109.47250 * 59.92196 * 1 2 3 33 33 H 1.09002 * 109.46570 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47509 * 180.08235 * 3 2 1 35 35 H 1.09005 * 109.46853 * 300.08417 * 3 2 1 36 36 H 1.08999 * 109.47245 * 60.07501 * 3 2 1 37 37 H 1.09004 * 109.45731 * 298.56494 * 4 2 1 38 38 H 1.09002 * 109.46519 * 178.61209 * 4 2 1 39 39 H 1.08996 * 109.49901 * 301.41899 * 5 4 2 40 40 H 1.09000 * 109.49795 * 181.31811 * 5 4 2 41 41 H 1.08998 * 109.47285 * 299.41570 * 8 6 5 42 42 H 1.09001 * 109.46864 * 59.41642 * 8 6 5 43 43 H 0.96995 * 119.99907 * 0.02562 * 9 8 6 44 44 H 1.09000 * 113.98969 * 358.72421 * 14 12 10 45 45 H 1.08999 * 113.99521 * 130.83405 * 14 12 10 46 46 H 1.08002 * 119.83965 * 359.91889 * 16 15 14 47 47 H 1.08006 * 119.91409 * 179.97438 * 17 16 15 48 48 H 1.07998 * 120.13178 * 180.02562 * 18 17 16 49 49 H 1.08005 * 119.93426 * 179.97438 * 19 18 17 50 50 H 0.96994 * 120.00461 * 179.72215 * 25 24 22 51 51 H 1.08999 * 109.59101 * 65.92923 * 30 21 6 52 52 H 1.08998 * 109.58580 * 186.35364 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2661 6 6 2.0140 -2.9040 0.0309 7 1 3.0979 -3.0064 0.0855 8 6 1.3704 -4.2906 -0.0316 9 7 1.8501 -4.9986 -1.2212 10 6 1.4152 -6.2469 -1.4835 11 8 0.6263 -6.7841 -0.7350 12 6 1.9081 -6.9750 -2.7073 13 1 1.8165 -6.3767 -3.6140 14 6 1.3187 -8.3783 -2.8506 15 6 2.7479 -8.8451 -2.6572 16 6 3.5927 -9.9454 -2.5761 17 6 4.9455 -9.7711 -2.3687 18 6 5.4708 -8.4988 -2.2406 19 6 4.6355 -7.4010 -2.3216 20 6 3.2800 -7.5743 -2.5293 21 7 1.6516 -2.1382 -1.1696 22 6 0.9640 -2.7315 -2.1944 23 1 0.0703 -3.3011 -1.9865 24 6 1.4157 -2.6009 -3.5005 25 7 0.6682 -3.0179 -4.5002 26 14 3.0813 -1.8261 -3.8395 27 1 4.1420 -2.8578 -3.7134 28 1 3.0961 -1.2665 -5.2149 29 1 3.3300 -0.7382 -2.8598 30 6 2.0462 -0.7254 -1.2520 31 1 -0.3633 0.5126 0.8906 32 1 -0.3633 0.5150 -0.8892 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1313 1.4410 -0.0015 35 1 1.6772 1.9566 -0.8893 36 1 1.6796 1.9558 0.8906 37 1 1.6988 -0.1958 2.1389 38 1 3.1306 -0.7443 1.2354 39 1 0.4133 -2.1355 1.2541 40 1 1.8481 -2.6628 2.1671 41 1 1.6386 -4.8562 0.8607 42 1 0.2866 -4.1860 -0.0834 43 1 2.4813 -4.5691 -1.8195 44 1 0.6461 -8.6613 -2.0409 45 1 0.9131 -8.5898 -3.8400 46 1 3.1882 -10.9419 -2.6749 47 1 5.5961 -10.6310 -2.3063 48 1 6.5299 -8.3632 -2.0788 49 1 5.0425 -6.4056 -2.2215 50 1 0.9821 -2.9230 -5.4130 51 1 3.1327 -0.6515 -1.2985 52 1 1.6089 -0.2753 -2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089689564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:06 Heat of formation + Delta-G solvation = 45.995756 kcal Electronic energy + Delta-G solvation = -31437.788737 eV Core-core repulsion = 27596.818445 eV Total energy + Delta-G solvation = -3840.970292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.72710 -39.15507 -38.17831 -35.38645 -34.77735 -33.11761 -32.20180 -30.82817 -30.68022 -28.08375 -27.18404 -26.79173 -25.56859 -25.05547 -23.25433 -22.51460 -21.78011 -20.61158 -20.10022 -19.07560 -18.39467 -17.09688 -16.51929 -16.29217 -15.55361 -15.40424 -15.00552 -14.90664 -14.51198 -14.16635 -13.92669 -13.83815 -13.69223 -13.46470 -12.94788 -12.94011 -12.85352 -12.58436 -12.34566 -12.27668 -11.91263 -11.78552 -11.61884 -11.55199 -11.50621 -11.36062 -11.13668 -10.88728 -10.79620 -10.77252 -10.61887 -10.38354 -10.34700 -9.93414 -9.73411 -9.62872 -9.39246 -9.28797 -8.70930 -8.56807 -8.38273 -8.14422 -6.64448 -6.04310 -3.65845 1.40073 1.47054 3.22663 3.26082 3.37643 3.41138 3.78850 4.00501 4.37798 4.43951 4.54492 4.79546 4.85419 5.07005 5.14462 5.18787 5.23450 5.34172 5.35900 5.43491 5.60981 5.66410 5.69702 5.71823 5.77695 5.83339 5.85693 5.97319 6.01524 6.03562 6.06377 6.15202 6.17428 6.23346 6.30967 6.31819 6.33831 6.35922 6.38870 6.44924 6.53286 6.54915 6.58890 6.70998 6.74241 6.86503 6.87120 6.91983 7.07078 7.09531 7.26783 8.03425 8.34465 8.41172 8.89327 8.96123 9.59320 10.08499 11.08508 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003643 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.206108 B = 7684.771956 C = 8144.096085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.159 3.841 7 H 0.034 0.966 8 C 0.139 3.861 9 N -0.683 5.683 10 C 0.531 3.469 11 O -0.563 6.563 12 C -0.066 4.066 13 H 0.124 0.876 14 C -0.058 4.058 15 C -0.117 4.117 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.085 4.085 20 C -0.115 4.115 21 N -0.601 5.601 22 C -0.259 4.259 23 H 0.077 0.923 24 C 0.044 3.956 25 N -0.902 5.902 26 Si 0.842 3.158 27 H -0.286 1.286 28 H -0.300 1.300 29 H -0.236 1.236 30 C 0.152 3.848 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.409 0.591 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.125 0.875 49 H 0.119 0.881 50 H 0.263 0.737 51 H 0.030 0.970 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -3.942 6.202 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.051 0.949 8 C 0.015 3.985 9 N -0.331 5.331 10 C 0.316 3.684 11 O -0.443 6.443 12 C -0.087 4.087 13 H 0.141 0.859 14 C -0.095 4.095 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.115 4.115 21 N -0.327 5.327 22 C -0.389 4.389 23 H 0.094 0.906 24 C -0.157 4.157 25 N -0.542 5.542 26 Si 0.671 3.329 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.161 1.161 30 C 0.026 3.974 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.246 0.754 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.137 0.863 50 H 0.073 0.927 51 H 0.047 0.953 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.522 -4.330 6.534 10.197 hybrid contribution 1.328 0.809 -0.851 1.773 sum 7.850 -3.521 5.683 10.311 Atomic orbital electron populations 1.21707 0.94464 1.02548 0.99595 1.21197 0.96327 0.94169 0.97347 1.21811 1.00333 0.96440 1.00956 1.21415 0.99582 0.95518 0.96874 1.21984 1.01628 0.95744 0.97591 1.20849 0.95940 0.89857 0.88035 0.94883 1.21194 0.99790 0.91052 0.86439 1.45796 1.46455 1.13990 1.26906 1.19797 0.81043 0.81762 0.85799 1.90606 1.35835 1.67903 1.49959 1.21330 0.90306 0.97600 0.99424 0.85863 1.21753 0.92526 0.91462 1.03765 1.22499 0.96858 0.93885 0.98474 1.20504 0.92807 0.97835 1.01022 1.20912 0.94724 0.97203 1.00999 1.20954 0.99340 0.92287 1.01447 1.20254 0.91254 0.99226 0.99617 1.21394 0.93358 0.96824 0.99964 1.44322 1.66054 1.04921 1.17354 1.18650 1.05422 1.30309 0.84473 0.90568 1.25733 0.96930 0.96906 0.96177 1.69777 1.37150 1.48398 0.98891 0.87738 0.85944 0.81560 0.77704 1.21278 1.22746 1.16066 1.21810 0.96092 0.84747 0.94704 0.94661 0.93447 0.91235 0.93344 0.92995 0.93445 0.93173 0.92894 0.91271 0.92807 0.92856 0.91394 0.75386 0.87076 0.88433 0.86579 0.86013 0.85749 0.86272 0.92706 0.95273 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.00 37.16 0.30 -1.76 16 2 C -0.09 -1.41 0.77 -154.16 -0.12 -1.53 16 3 C -0.14 -1.90 8.48 37.16 0.32 -1.58 16 4 C -0.10 -1.40 4.71 -26.69 -0.13 -1.52 16 5 C -0.13 -1.98 5.03 -26.61 -0.13 -2.11 16 6 C 0.16 2.82 3.01 -67.60 -0.20 2.62 16 7 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.14 2.60 4.50 -4.04 -0.02 2.58 16 9 N -0.68 -13.43 4.13 -60.29 -0.25 -13.68 16 10 C 0.53 10.65 7.33 -10.99 -0.08 10.57 16 11 O -0.56 -12.55 15.66 5.55 0.09 -12.46 16 12 C -0.07 -1.15 4.14 -96.59 -0.40 -1.55 16 13 H 0.12 2.25 8.14 -51.92 -0.42 1.82 16 14 C -0.06 -0.89 7.92 -27.50 -0.22 -1.11 16 15 C -0.12 -1.78 7.32 -107.51 -0.79 -2.57 16 16 C -0.10 -1.36 10.05 -39.42 -0.40 -1.75 16 17 C -0.12 -1.43 10.03 -39.68 -0.40 -1.83 16 18 C -0.12 -1.53 10.06 -39.60 -0.40 -1.93 16 19 C -0.09 -1.26 10.04 -39.61 -0.40 -1.66 16 20 C -0.11 -1.87 7.05 -104.55 -0.74 -2.61 16 21 N -0.60 -12.23 1.84 -164.51 -0.30 -12.53 16 22 C -0.26 -6.23 6.60 -15.06 -0.10 -6.33 16 23 H 0.08 2.12 7.12 -52.48 -0.37 1.74 16 24 C 0.04 1.12 5.27 -17.43 -0.09 1.03 16 25 N -0.90 -25.02 13.97 55.49 0.78 -24.25 16 26 Si 0.84 19.19 26.62 -169.99 -4.53 14.67 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.24 -4.97 3.87 56.52 0.22 -4.76 16 30 C 0.15 2.91 2.74 -3.49 -0.01 2.90 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.41 7.47 -51.93 -0.39 1.02 16 43 H 0.41 8.32 7.31 -40.82 -0.30 8.02 16 44 H 0.11 1.79 7.02 -51.93 -0.36 1.42 16 45 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 48 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 49 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 50 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.03 0.58 6.36 -51.93 -0.33 0.24 16 52 H 0.06 1.36 6.49 -51.93 -0.34 1.03 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -28.32 395.66 -11.07 -39.38 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.81 Total: 13.06 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -4.00 Total: -10.15 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.22 Total: -50.46 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.53 Total: 14.67 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.32 -11.07 -39.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.379 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds