Wall clock time and date at job start Wed Apr 1 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.52598 * 2 1 4 4 C 1.53042 * 109.50012 * 120.08142 * 2 1 3 5 5 C 1.53040 * 109.53928 * 58.58297 * 4 2 1 6 6 C 1.53189 * 109.30998 * 61.36959 * 5 4 2 7 7 H 1.09003 * 109.70635 * 65.22109 * 6 5 4 8 8 C 1.52999 * 109.58632 * 185.57633 * 6 5 4 9 9 N 1.46508 * 109.47000 * 179.41474 * 8 6 5 10 10 C 1.34773 * 119.99822 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.50695 * 120.00273 * 179.97438 * 10 9 8 13 13 H 1.09007 * 112.50785 * 309.67605 * 12 10 9 14 14 C 1.52877 * 113.17114 * 179.84136 * 12 10 9 15 15 C 1.51599 * 84.67568 * 244.77711 * 14 12 10 16 16 C 1.38952 * 145.53565 * 180.02562 * 15 14 12 17 17 C 1.37969 * 120.32304 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.17918 * 359.97438 * 17 16 15 19 19 C 1.38178 * 119.74522 * 359.97438 * 18 17 16 20 20 C 1.38227 * 120.12679 * 0.02562 * 19 18 17 21 21 N 1.46930 * 108.77770 * 305.36523 * 6 5 4 22 22 C 1.36938 * 120.63156 * 233.58772 * 21 6 5 23 23 H 1.08004 * 119.99684 * 49.61814 * 22 21 6 24 24 C 1.38809 * 120.00035 * 229.62495 * 22 21 6 25 25 N 1.31614 * 120.00343 * 188.88644 * 24 22 21 26 26 Si 1.86802 * 119.99797 * 8.61320 * 24 22 21 27 27 H 1.48496 * 109.47187 * 84.41186 * 26 24 22 28 28 H 1.48498 * 109.46866 * 204.41454 * 26 24 22 29 29 H 1.48501 * 109.47172 * 324.41136 * 26 24 22 30 30 C 1.46921 * 118.73761 * 53.85892 * 21 6 5 31 31 H 1.08994 * 109.47283 * 299.92054 * 1 2 3 32 32 H 1.08995 * 109.47250 * 59.92196 * 1 2 3 33 33 H 1.09002 * 109.46570 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47509 * 180.08235 * 3 2 1 35 35 H 1.09005 * 109.46853 * 300.08417 * 3 2 1 36 36 H 1.08999 * 109.47245 * 60.07501 * 3 2 1 37 37 H 1.09004 * 109.45731 * 298.56494 * 4 2 1 38 38 H 1.09002 * 109.46519 * 178.61209 * 4 2 1 39 39 H 1.08996 * 109.49901 * 301.41899 * 5 4 2 40 40 H 1.09000 * 109.49795 * 181.31811 * 5 4 2 41 41 H 1.08998 * 109.47285 * 299.41570 * 8 6 5 42 42 H 1.09001 * 109.46864 * 59.41642 * 8 6 5 43 43 H 0.96995 * 119.99907 * 0.02562 * 9 8 6 44 44 H 1.09000 * 113.98969 * 358.72421 * 14 12 10 45 45 H 1.08999 * 113.99521 * 130.83405 * 14 12 10 46 46 H 1.08002 * 119.83965 * 359.91889 * 16 15 14 47 47 H 1.08006 * 119.91409 * 179.97438 * 17 16 15 48 48 H 1.07998 * 120.13178 * 180.02562 * 18 17 16 49 49 H 1.08005 * 119.93426 * 179.97438 * 19 18 17 50 50 H 0.96994 * 120.00461 * 179.72215 * 25 24 22 51 51 H 1.08999 * 109.59101 * 65.92923 * 30 21 6 52 52 H 1.08998 * 109.58580 * 186.35364 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2661 6 6 2.0140 -2.9040 0.0309 7 1 3.0979 -3.0064 0.0855 8 6 1.3704 -4.2906 -0.0316 9 7 1.8501 -4.9986 -1.2212 10 6 1.4152 -6.2469 -1.4835 11 8 0.6263 -6.7841 -0.7350 12 6 1.9081 -6.9750 -2.7073 13 1 1.8165 -6.3767 -3.6140 14 6 1.3187 -8.3783 -2.8506 15 6 2.7479 -8.8451 -2.6572 16 6 3.5927 -9.9454 -2.5761 17 6 4.9455 -9.7711 -2.3687 18 6 5.4708 -8.4988 -2.2406 19 6 4.6355 -7.4010 -2.3216 20 6 3.2800 -7.5743 -2.5293 21 7 1.6516 -2.1382 -1.1696 22 6 0.9640 -2.7315 -2.1944 23 1 0.0703 -3.3011 -1.9865 24 6 1.4157 -2.6009 -3.5005 25 7 0.6682 -3.0179 -4.5002 26 14 3.0813 -1.8261 -3.8395 27 1 4.1420 -2.8578 -3.7134 28 1 3.0961 -1.2665 -5.2149 29 1 3.3300 -0.7382 -2.8598 30 6 2.0462 -0.7254 -1.2520 31 1 -0.3633 0.5126 0.8906 32 1 -0.3633 0.5150 -0.8892 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1313 1.4410 -0.0015 35 1 1.6772 1.9566 -0.8893 36 1 1.6796 1.9558 0.8906 37 1 1.6988 -0.1958 2.1389 38 1 3.1306 -0.7443 1.2354 39 1 0.4133 -2.1355 1.2541 40 1 1.8481 -2.6628 2.1671 41 1 1.6386 -4.8562 0.8607 42 1 0.2866 -4.1860 -0.0834 43 1 2.4813 -4.5691 -1.8195 44 1 0.6461 -8.6613 -2.0409 45 1 0.9131 -8.5898 -3.8400 46 1 3.1882 -10.9419 -2.6749 47 1 5.5961 -10.6310 -2.3063 48 1 6.5299 -8.3632 -2.0788 49 1 5.0425 -6.4056 -2.2215 50 1 0.9821 -2.9230 -5.4130 51 1 3.1327 -0.6515 -1.2985 52 1 1.6089 -0.2753 -2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089689564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:04 Heat of formation + Delta-G solvation = 32.103278 kcal Electronic energy + Delta-G solvation = -31438.391160 eV Core-core repulsion = 27596.818445 eV Total energy + Delta-G solvation = -3841.572715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00293 -40.59278 -39.62952 -36.76927 -36.09139 -34.89663 -33.74314 -32.53274 -31.73677 -29.42804 -28.36069 -28.06912 -27.28091 -26.36209 -24.74977 -23.95219 -22.95769 -21.85728 -21.65677 -20.49595 -19.85585 -18.63167 -17.97374 -17.66777 -17.13338 -16.86387 -16.64514 -16.17253 -15.75678 -15.57127 -15.33799 -15.24758 -15.15535 -14.81809 -14.53256 -14.21740 -14.11486 -13.94341 -13.79300 -13.51766 -13.31243 -13.09842 -12.94039 -12.90021 -12.82159 -12.75424 -12.66730 -12.54613 -12.26594 -12.07915 -11.94688 -11.92185 -11.54859 -11.41464 -11.22737 -11.08171 -10.96769 -10.80581 -10.42029 -9.83509 -9.78652 -9.53247 -8.40087 -8.06144 -5.65126 0.32560 0.41161 1.39324 1.48474 1.52582 1.65258 2.40574 2.50517 2.81480 3.14082 3.20516 3.32247 3.42542 3.51412 3.91323 3.95557 3.97986 4.09981 4.18005 4.20099 4.27784 4.32033 4.38279 4.46338 4.60395 4.61384 4.67795 4.72149 4.77812 4.80771 4.87094 4.91173 4.91943 5.00325 5.00865 5.05809 5.08154 5.13383 5.13470 5.13986 5.21467 5.31667 5.44602 5.47469 5.48978 5.53729 5.57832 5.66957 5.75776 5.76648 6.04657 6.06380 6.37845 6.68997 7.08076 7.32237 7.66623 8.18421 9.09908 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003643 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.206108 B = 7684.771956 C = 8144.096085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.160 3.840 7 H 0.048 0.952 8 C 0.142 3.858 9 N -0.684 5.684 10 C 0.525 3.475 11 O -0.591 6.591 12 C -0.072 4.072 13 H 0.104 0.896 14 C -0.054 4.054 15 C -0.129 4.129 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.144 4.144 21 N -0.609 5.609 22 C -0.224 4.224 23 H 0.028 0.972 24 C -0.003 4.003 25 N -0.951 5.951 26 Si 0.891 3.109 27 H -0.284 1.284 28 H -0.320 1.320 29 H -0.203 1.203 30 C 0.148 3.852 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.406 0.594 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.142 0.858 47 H 0.161 0.839 48 H 0.157 0.843 49 H 0.120 0.880 50 H 0.257 0.743 51 H 0.037 0.963 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 -3.805 8.540 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.191 4.191 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.066 0.934 8 C 0.018 3.982 9 N -0.331 5.331 10 C 0.311 3.689 11 O -0.474 6.474 12 C -0.093 4.093 13 H 0.122 0.878 14 C -0.090 4.090 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.144 4.144 21 N -0.335 5.335 22 C -0.354 4.354 23 H 0.046 0.954 24 C -0.200 4.200 25 N -0.595 5.595 26 Si 0.720 3.280 27 H -0.210 1.210 28 H -0.249 1.249 29 H -0.127 1.127 30 C 0.023 3.977 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.242 0.758 44 H 0.117 0.883 45 H 0.132 0.868 46 H 0.159 0.841 47 H 0.178 0.822 48 H 0.174 0.826 49 H 0.138 0.862 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.791 -4.166 8.924 13.888 hybrid contribution 0.257 0.718 -1.509 1.691 sum 10.048 -3.448 7.415 12.955 Atomic orbital electron populations 1.21646 0.95187 1.00874 1.00118 1.21144 0.95662 0.95649 0.96317 1.21765 1.00994 0.94498 1.01817 1.21409 1.00232 0.94441 0.96788 1.21939 1.00882 0.96590 0.97007 1.20995 0.96543 0.88995 0.87941 0.93416 1.21229 0.98039 0.92240 0.86719 1.45859 1.46157 1.14002 1.27090 1.20307 0.80418 0.81819 0.86315 1.90568 1.37002 1.68541 1.51242 1.21308 0.92635 0.98159 0.97170 0.87781 1.21690 0.93089 0.90008 1.04254 1.22481 0.96354 0.94459 0.99660 1.20882 0.93268 0.98249 1.00096 1.21400 0.94571 0.98276 0.98704 1.21368 1.00598 0.91761 0.99863 1.20506 0.90850 1.00422 1.00223 1.21345 0.93534 0.96994 1.02551 1.44363 1.65819 1.06003 1.17291 1.18190 1.03499 1.28348 0.85397 0.95398 1.26211 0.99765 0.98091 0.95918 1.69927 1.39128 1.51414 0.99065 0.86960 0.82320 0.81730 0.77037 1.21047 1.24907 1.12688 1.21807 0.96227 0.83861 0.95774 0.92075 0.94968 0.93994 0.92249 0.93576 0.91262 0.90604 0.91668 0.92578 0.90069 0.91220 0.94478 0.75835 0.88287 0.86762 0.84067 0.82180 0.82569 0.86195 0.93381 0.94538 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 8.00 71.98 0.58 -3.25 16 2 C -0.09 -2.53 0.77 -51.96 -0.04 -2.57 16 3 C -0.13 -3.18 8.48 71.98 0.61 -2.57 16 4 C -0.09 -2.28 4.71 30.62 0.14 -2.13 16 5 C -0.12 -3.51 5.03 30.67 0.15 -3.36 16 6 C 0.16 5.55 3.01 44.97 0.14 5.69 16 7 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.14 5.44 4.50 86.38 0.39 5.83 16 9 N -0.68 -28.30 4.13 -463.05 -1.91 -30.21 16 10 C 0.52 22.44 7.33 87.66 0.64 23.08 16 11 O -0.59 -27.92 15.66 -3.06 -0.05 -27.97 16 12 C -0.07 -2.69 4.14 -14.66 -0.06 -2.75 16 13 H 0.10 4.20 8.14 -2.38 -0.02 4.18 16 14 C -0.05 -1.72 7.92 30.09 0.24 -1.48 16 15 C -0.13 -3.93 7.32 -21.73 -0.16 -4.09 16 16 C -0.11 -2.56 10.05 22.38 0.22 -2.33 16 17 C -0.11 -2.26 10.03 22.21 0.22 -2.04 16 18 C -0.12 -2.61 10.06 22.26 0.22 -2.38 16 19 C -0.10 -2.93 10.04 22.25 0.22 -2.70 16 20 C -0.14 -4.79 7.05 -19.82 -0.14 -4.93 16 21 N -0.61 -24.92 1.84 -674.39 -1.24 -26.16 16 22 C -0.22 -11.32 6.60 84.03 0.55 -10.77 16 23 H 0.03 1.70 7.12 -2.91 -0.02 1.68 16 24 C 0.00 -0.16 5.27 84.86 0.45 0.29 16 25 N -0.95 -56.19 13.97 21.65 0.30 -55.89 16 26 Si 0.89 40.47 26.62 68.60 1.83 42.30 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 29 H -0.20 -8.12 3.87 99.48 0.38 -7.74 16 30 C 0.15 5.48 2.74 86.51 0.24 5.72 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.54 5.97 -2.39 -0.01 1.53 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.74 6.33 -2.39 -0.02 1.73 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.04 1.64 7.47 -2.39 -0.02 1.63 16 43 H 0.41 17.27 7.31 -92.71 -0.68 16.60 16 44 H 0.10 3.39 7.02 -2.39 -0.02 3.37 16 45 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 48 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 49 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 50 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 51 H 0.04 1.33 6.36 -2.39 -0.02 1.31 16 52 H 0.04 1.61 6.49 -2.39 -0.02 1.60 16 Total: -1.00 -66.50 395.66 3.46 -63.04 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.09 Total: 41.64 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.62 Total: -6.74 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -2.85 Total: -112.26 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.83 Total: 42.30 kcal Total: -66.50 3.46 -63.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.143 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds