Wall clock time and date at job start Wed Apr 1 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.52335 * 2 1 4 4 C 1.53036 * 109.49550 * 120.07796 * 2 1 3 5 5 C 1.53045 * 109.53775 * 181.31912 * 4 2 1 6 6 C 1.53189 * 109.31233 * 298.63572 * 5 4 2 7 7 H 1.09006 * 109.58479 * 294.70334 * 6 5 4 8 8 C 1.52992 * 109.58626 * 174.42198 * 6 5 4 9 9 N 1.46500 * 109.47322 * 179.81614 * 8 6 5 10 10 C 1.34774 * 120.00452 * 184.93669 * 9 8 6 11 11 O 1.21280 * 119.99720 * 4.75590 * 10 9 8 12 12 C 1.50704 * 120.00280 * 184.75604 * 10 9 8 13 13 H 1.08993 * 112.88522 * 313.21567 * 12 10 9 14 14 C 1.52255 * 113.75910 * 182.11823 * 12 10 9 15 15 C 1.50556 * 87.23862 * 245.55994 * 14 12 10 16 16 C 1.38806 * 147.31041 * 180.14037 * 15 14 12 17 17 C 1.38065 * 120.09261 * 179.60247 * 16 15 14 18 18 C 1.38229 * 119.98119 * 0.02562 * 17 16 15 19 19 C 1.38069 * 119.98229 * 0.02562 * 18 17 16 20 20 C 1.37729 * 92.76437 * 359.81747 * 15 14 12 21 21 N 1.46923 * 108.77655 * 54.63351 * 6 5 4 22 22 C 1.36935 * 120.62973 * 126.36851 * 21 6 5 23 23 H 1.07993 * 120.00256 * 335.78397 * 22 21 6 24 24 C 1.38823 * 119.99867 * 155.78289 * 22 21 6 25 25 N 1.31619 * 119.99636 * 157.65660 * 24 22 21 26 26 Si 1.86799 * 119.99969 * 337.66154 * 24 22 21 27 27 H 1.48496 * 109.47261 * 95.32487 * 26 24 22 28 28 H 1.48500 * 109.46796 * 215.32445 * 26 24 22 29 29 H 1.48501 * 109.47190 * 335.32197 * 26 24 22 30 30 C 1.46931 * 118.74024 * 306.39117 * 21 6 5 31 31 H 1.09002 * 109.47707 * 299.92252 * 1 2 3 32 32 H 1.09007 * 109.46976 * 59.92225 * 1 2 3 33 33 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47370 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47201 * 300.08048 * 3 2 1 36 36 H 1.09004 * 109.47185 * 60.07367 * 3 2 1 37 37 H 1.08998 * 109.46287 * 61.29684 * 4 2 1 38 38 H 1.09005 * 109.45996 * 301.33621 * 4 2 1 39 39 H 1.09005 * 109.49408 * 178.68015 * 5 4 2 40 40 H 1.08996 * 109.52161 * 58.60627 * 5 4 2 41 41 H 1.09003 * 109.47138 * 59.82085 * 8 6 5 42 42 H 1.08994 * 109.47341 * 299.81578 * 8 6 5 43 43 H 0.97003 * 119.99489 * 4.93826 * 9 8 6 44 44 H 1.08997 * 113.48394 * 130.98245 * 14 12 10 45 45 H 1.09010 * 113.69130 * 0.16776 * 14 12 10 46 46 H 1.08002 * 119.95048 * 359.62752 * 16 15 14 47 47 H 1.08003 * 120.00941 * 180.02562 * 17 16 15 48 48 H 1.08011 * 120.01095 * 180.02562 * 18 17 16 49 49 H 1.07996 * 119.95082 * 179.97438 * 19 18 17 50 50 H 0.97000 * 119.99680 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58975 * 293.82646 * 30 21 6 52 52 H 1.08999 * 109.58563 * 173.39266 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 3.5708 -0.6949 1.2661 6 6 4.1053 -1.4266 0.0309 7 1 3.8398 -2.4823 0.0882 8 6 5.6272 -1.2832 -0.0315 9 7 6.1361 -1.9875 -1.2110 10 6 7.4644 -2.0820 -1.4185 11 8 8.2396 -1.6604 -0.5866 12 6 7.9865 -2.7117 -2.6843 13 1 7.4928 -3.6534 -2.9241 14 6 9.5056 -2.7909 -2.7487 15 6 9.4344 -1.8253 -3.9016 16 6 10.1262 -1.0933 -4.8568 17 6 9.4383 -0.2977 -5.7512 18 6 8.0589 -0.2291 -5.6956 19 6 7.3697 -0.9558 -4.7453 20 6 8.0599 -1.7569 -3.8462 21 7 3.5047 -0.8291 -1.1694 22 6 4.2937 -0.3785 -2.1939 23 1 5.3168 -0.0915 -2.0014 24 6 3.7783 -0.2906 -3.4799 25 7 4.3327 0.5192 -4.3570 26 14 2.2982 -1.3216 -3.9654 27 1 1.0603 -0.5176 -3.8031 28 1 2.4323 -1.7432 -5.3830 29 1 2.2255 -2.5234 -3.0963 30 6 2.0413 -0.7238 -1.2496 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1313 1.4411 -0.0005 35 1 1.6773 1.9566 -0.8893 36 1 1.6795 1.9558 0.8907 37 1 1.6967 -1.7572 1.2354 38 1 1.6581 -0.2243 2.1389 39 1 3.9333 -1.1895 2.1673 40 1 3.9163 0.3388 1.2545 41 1 6.0698 -1.7130 0.8672 42 1 5.8904 -0.2276 -0.0970 43 1 5.5170 -2.3857 -1.8427 44 1 9.8776 -3.7767 -3.0277 45 1 10.0031 -2.3836 -1.8685 46 1 11.2040 -1.1466 -4.9006 47 1 9.9779 0.2710 -6.4941 48 1 7.5202 0.3929 -6.3953 49 1 6.2919 -0.9015 -4.7020 50 1 3.9728 0.5803 -5.2557 51 1 1.6052 -1.7216 -1.2979 52 1 1.7638 -0.1580 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089689566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:10 Heat of formation + Delta-G solvation = 50.170933 kcal Electronic energy + Delta-G solvation = -31840.591443 eV Core-core repulsion = 27999.802201 eV Total energy + Delta-G solvation = -3840.789243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.65930 -39.23357 -38.19811 -35.40408 -34.71267 -33.23788 -32.28912 -30.78916 -30.22661 -28.11756 -26.99881 -26.78698 -25.57291 -25.00461 -23.30646 -22.64173 -21.54139 -20.37173 -20.05296 -19.07370 -18.43020 -17.12713 -16.41551 -16.15879 -15.63300 -15.44667 -14.90462 -14.73814 -14.43371 -14.13320 -13.88177 -13.78404 -13.62022 -13.53729 -13.01969 -12.76740 -12.56698 -12.52474 -12.29453 -12.11040 -11.88022 -11.71157 -11.61693 -11.55470 -11.53041 -11.46085 -11.09506 -10.99597 -10.67553 -10.56514 -10.54842 -10.34331 -10.04763 -10.01956 -9.82029 -9.62619 -9.39783 -9.32872 -8.69195 -8.29239 -8.27134 -8.14191 -7.04632 -6.00632 -3.34617 1.72602 1.88843 3.14825 3.25497 3.41537 3.42872 3.79935 4.26049 4.44847 4.57614 4.73378 4.83154 4.86130 5.10308 5.21670 5.28115 5.33028 5.39466 5.45452 5.51484 5.56744 5.58251 5.69430 5.81061 5.86642 5.92298 5.98740 6.02115 6.08117 6.11655 6.18077 6.24008 6.26708 6.28285 6.30516 6.32245 6.33411 6.35404 6.46131 6.49621 6.62818 6.64603 6.70741 6.82290 6.83889 6.85532 7.08735 7.09447 7.13752 7.23230 7.49926 7.84439 8.21260 8.28809 8.83030 8.86688 9.64806 10.01420 11.11771 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.004258 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.840924 B = 6574.448403 C = 7878.122810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.165 3.835 7 H 0.036 0.964 8 C 0.134 3.866 9 N -0.693 5.693 10 C 0.528 3.472 11 O -0.558 6.558 12 C -0.068 4.068 13 H 0.111 0.889 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.061 4.061 20 C -0.119 4.119 21 N -0.601 5.601 22 C -0.261 4.261 23 H 0.100 0.900 24 C 0.029 3.971 25 N -0.894 5.894 26 Si 0.867 3.133 27 H -0.292 1.292 28 H -0.306 1.306 29 H -0.272 1.272 30 C 0.140 3.860 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.413 0.587 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.150 0.850 50 H 0.261 0.739 51 H 0.023 0.977 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -5.153 3.786 6.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.184 4.184 4 C -0.134 4.134 5 C -0.171 4.171 6 C 0.058 3.942 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.344 5.344 10 C 0.314 3.686 11 O -0.438 6.438 12 C -0.089 4.089 13 H 0.129 0.871 14 C -0.094 4.094 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.135 4.135 19 C -0.079 4.079 20 C -0.120 4.120 21 N -0.325 5.325 22 C -0.389 4.389 23 H 0.118 0.882 24 C -0.170 4.170 25 N -0.537 5.537 26 Si 0.698 3.302 27 H -0.220 1.220 28 H -0.235 1.235 29 H -0.197 1.197 30 C 0.014 3.986 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.137 0.863 48 H 0.142 0.858 49 H 0.168 0.832 50 H 0.071 0.929 51 H 0.041 0.959 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.377 -4.770 4.187 6.778 hybrid contribution -1.495 -0.521 -0.883 1.813 sum 0.882 -5.292 3.304 6.301 Atomic orbital electron populations 1.21829 0.95779 1.00984 1.01127 1.21041 0.93937 0.96761 0.96939 1.21718 1.02645 0.94331 0.99691 1.21420 0.95521 0.99594 0.96864 1.22003 0.95791 1.01733 0.97543 1.20711 0.90706 0.95101 0.87646 0.94622 1.21281 0.93119 0.97533 0.87067 1.45990 1.06272 1.55524 1.26572 1.19911 0.82719 0.79266 0.86720 1.90618 1.56782 1.50312 1.46103 1.21068 0.97787 0.98435 0.91597 0.87090 1.21362 0.93876 0.97820 0.96307 1.21777 0.95908 0.98376 0.96782 1.20223 0.99003 0.98070 0.95593 1.20959 0.94656 0.99126 0.98983 1.20996 0.93805 0.99491 0.99161 1.21072 1.02683 0.92352 0.91802 1.21207 0.95259 0.99074 0.96415 1.44401 1.00766 1.70191 1.17108 1.19123 0.97544 1.36801 0.85409 0.88213 1.25131 0.97010 0.98758 0.96082 1.69859 1.42382 1.35780 1.05677 0.87219 0.83822 0.82387 0.76735 1.22005 1.23471 1.19679 1.21395 0.84461 0.96729 0.95966 0.93200 0.92978 0.93275 0.91030 0.93400 0.94551 0.92826 0.93000 0.92635 0.91142 0.92191 0.91427 0.74982 0.89315 0.87767 0.87064 0.86329 0.85805 0.83241 0.92910 0.95888 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.48 37.16 0.32 -1.68 16 2 C -0.08 -1.39 0.77 -154.39 -0.12 -1.51 16 3 C -0.13 -2.15 7.99 37.16 0.30 -1.85 16 4 C -0.10 -1.40 4.71 -26.69 -0.13 -1.52 16 5 C -0.13 -1.97 5.03 -26.61 -0.13 -2.11 16 6 C 0.17 2.85 3.02 -67.61 -0.20 2.65 16 7 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.13 2.40 4.44 -4.05 -0.02 2.38 16 9 N -0.69 -12.74 3.87 -60.30 -0.23 -12.97 16 10 C 0.53 9.95 7.35 -10.98 -0.08 9.87 16 11 O -0.56 -11.93 15.69 5.56 0.09 -11.84 16 12 C -0.07 -1.11 4.27 -93.66 -0.40 -1.51 16 13 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.06 -0.83 7.69 -28.63 -0.22 -1.05 16 15 C -0.13 -2.14 7.42 -104.96 -0.78 -2.92 16 16 C -0.11 -1.71 10.06 -39.43 -0.40 -2.11 16 17 C -0.12 -1.84 10.04 -39.65 -0.40 -2.24 16 18 C -0.12 -2.06 10.04 -39.65 -0.40 -2.46 16 19 C -0.06 -1.21 10.06 -39.44 -0.40 -1.61 16 20 C -0.12 -2.19 6.90 -104.96 -0.72 -2.92 16 21 N -0.60 -12.20 2.24 -164.78 -0.37 -12.57 16 22 C -0.26 -6.14 7.62 -15.06 -0.11 -6.25 16 23 H 0.10 2.59 5.69 -52.49 -0.30 2.30 16 24 C 0.03 0.73 5.17 -17.43 -0.09 0.64 16 25 N -0.89 -23.72 12.71 55.49 0.71 -23.01 16 26 Si 0.87 20.22 24.34 -169.99 -4.14 16.08 16 27 H -0.29 -6.89 6.67 56.52 0.38 -6.51 16 28 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.27 -6.20 6.49 56.52 0.37 -5.83 16 30 C 0.14 2.77 2.88 -3.71 -0.01 2.76 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 41 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.07 1.38 7.43 -51.93 -0.39 0.99 16 43 H 0.41 7.70 7.22 -40.82 -0.29 7.41 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.64 7.04 -51.92 -0.37 1.27 16 46 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 47 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 48 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 49 H 0.15 3.35 6.69 -52.49 -0.35 3.00 16 50 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 51 H 0.02 0.46 7.07 -51.93 -0.37 0.10 16 52 H 0.07 1.61 4.25 -51.93 -0.22 1.39 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -27.64 390.91 -10.51 -38.15 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.46 Total: 13.72 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -4.00 Total: -13.45 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.10 Total: -48.56 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.14 Total: 16.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.64 -10.51 -38.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.325 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds