Wall clock time and date at job start Wed Apr 1 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.52335 * 2 1 4 4 C 1.53036 * 109.49550 * 120.07796 * 2 1 3 5 5 C 1.53045 * 109.53775 * 181.31912 * 4 2 1 6 6 C 1.53189 * 109.31233 * 298.63572 * 5 4 2 7 7 H 1.09006 * 109.58479 * 294.70334 * 6 5 4 8 8 C 1.52992 * 109.58626 * 174.42198 * 6 5 4 9 9 N 1.46500 * 109.47322 * 179.81614 * 8 6 5 10 10 C 1.34774 * 120.00452 * 184.93669 * 9 8 6 11 11 O 1.21280 * 119.99720 * 4.75590 * 10 9 8 12 12 C 1.50704 * 120.00280 * 184.75604 * 10 9 8 13 13 H 1.08993 * 112.88522 * 313.21567 * 12 10 9 14 14 C 1.52255 * 113.75910 * 182.11823 * 12 10 9 15 15 C 1.50556 * 87.23862 * 245.55994 * 14 12 10 16 16 C 1.38806 * 147.31041 * 180.14037 * 15 14 12 17 17 C 1.38065 * 120.09261 * 179.60247 * 16 15 14 18 18 C 1.38229 * 119.98119 * 0.02562 * 17 16 15 19 19 C 1.38069 * 119.98229 * 0.02562 * 18 17 16 20 20 C 1.37729 * 92.76437 * 359.81747 * 15 14 12 21 21 N 1.46923 * 108.77655 * 54.63351 * 6 5 4 22 22 C 1.36935 * 120.62973 * 126.36851 * 21 6 5 23 23 H 1.07993 * 120.00256 * 335.78397 * 22 21 6 24 24 C 1.38823 * 119.99867 * 155.78289 * 22 21 6 25 25 N 1.31619 * 119.99636 * 157.65660 * 24 22 21 26 26 Si 1.86799 * 119.99969 * 337.66154 * 24 22 21 27 27 H 1.48496 * 109.47261 * 95.32487 * 26 24 22 28 28 H 1.48500 * 109.46796 * 215.32445 * 26 24 22 29 29 H 1.48501 * 109.47190 * 335.32197 * 26 24 22 30 30 C 1.46931 * 118.74024 * 306.39117 * 21 6 5 31 31 H 1.09002 * 109.47707 * 299.92252 * 1 2 3 32 32 H 1.09007 * 109.46976 * 59.92225 * 1 2 3 33 33 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47370 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47201 * 300.08048 * 3 2 1 36 36 H 1.09004 * 109.47185 * 60.07367 * 3 2 1 37 37 H 1.08998 * 109.46287 * 61.29684 * 4 2 1 38 38 H 1.09005 * 109.45996 * 301.33621 * 4 2 1 39 39 H 1.09005 * 109.49408 * 178.68015 * 5 4 2 40 40 H 1.08996 * 109.52161 * 58.60627 * 5 4 2 41 41 H 1.09003 * 109.47138 * 59.82085 * 8 6 5 42 42 H 1.08994 * 109.47341 * 299.81578 * 8 6 5 43 43 H 0.97003 * 119.99489 * 4.93826 * 9 8 6 44 44 H 1.08997 * 113.48394 * 130.98245 * 14 12 10 45 45 H 1.09010 * 113.69130 * 0.16776 * 14 12 10 46 46 H 1.08002 * 119.95048 * 359.62752 * 16 15 14 47 47 H 1.08003 * 120.00941 * 180.02562 * 17 16 15 48 48 H 1.08011 * 120.01095 * 180.02562 * 18 17 16 49 49 H 1.07996 * 119.95082 * 179.97438 * 19 18 17 50 50 H 0.97000 * 119.99680 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58975 * 293.82646 * 30 21 6 52 52 H 1.08999 * 109.58563 * 173.39266 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 3.5708 -0.6949 1.2661 6 6 4.1053 -1.4266 0.0309 7 1 3.8398 -2.4823 0.0882 8 6 5.6272 -1.2832 -0.0315 9 7 6.1361 -1.9875 -1.2110 10 6 7.4644 -2.0820 -1.4185 11 8 8.2396 -1.6604 -0.5866 12 6 7.9865 -2.7117 -2.6843 13 1 7.4928 -3.6534 -2.9241 14 6 9.5056 -2.7909 -2.7487 15 6 9.4344 -1.8253 -3.9016 16 6 10.1262 -1.0933 -4.8568 17 6 9.4383 -0.2977 -5.7512 18 6 8.0589 -0.2291 -5.6956 19 6 7.3697 -0.9558 -4.7453 20 6 8.0599 -1.7569 -3.8462 21 7 3.5047 -0.8291 -1.1694 22 6 4.2937 -0.3785 -2.1939 23 1 5.3168 -0.0915 -2.0014 24 6 3.7783 -0.2906 -3.4799 25 7 4.3327 0.5192 -4.3570 26 14 2.2982 -1.3216 -3.9654 27 1 1.0603 -0.5176 -3.8031 28 1 2.4323 -1.7432 -5.3830 29 1 2.2255 -2.5234 -3.0963 30 6 2.0413 -0.7238 -1.2496 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1313 1.4411 -0.0005 35 1 1.6773 1.9566 -0.8893 36 1 1.6795 1.9558 0.8907 37 1 1.6967 -1.7572 1.2354 38 1 1.6581 -0.2243 2.1389 39 1 3.9333 -1.1895 2.1673 40 1 3.9163 0.3388 1.2545 41 1 6.0698 -1.7130 0.8672 42 1 5.8904 -0.2276 -0.0970 43 1 5.5170 -2.3857 -1.8427 44 1 9.8776 -3.7767 -3.0277 45 1 10.0031 -2.3836 -1.8685 46 1 11.2040 -1.1466 -4.9006 47 1 9.9779 0.2710 -6.4941 48 1 7.5202 0.3929 -6.3953 49 1 6.2919 -0.9015 -4.7020 50 1 3.9728 0.5803 -5.2557 51 1 1.6052 -1.7216 -1.2979 52 1 1.7638 -0.1580 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089689566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:09 Heat of formation + Delta-G solvation = 36.423631 kcal Electronic energy + Delta-G solvation = -31841.187571 eV Core-core repulsion = 27999.802201 eV Total energy + Delta-G solvation = -3841.385370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.01281 -40.67052 -39.65402 -36.83214 -36.07972 -34.95298 -33.77079 -32.46726 -31.55907 -29.47749 -28.29832 -28.11325 -27.26115 -26.32353 -24.84403 -24.03648 -22.88309 -21.76531 -21.55563 -20.47417 -19.89547 -18.64624 -17.90928 -17.59262 -17.20404 -16.92158 -16.59209 -16.09216 -15.80764 -15.55765 -15.33859 -15.21842 -15.08073 -14.91946 -14.54143 -14.16459 -14.10566 -13.85795 -13.83500 -13.46922 -13.33518 -13.08949 -12.94183 -12.92510 -12.83007 -12.77318 -12.72208 -12.43173 -12.21221 -12.09148 -11.84885 -11.80408 -11.53624 -11.43076 -11.36691 -11.13449 -10.98554 -10.81580 -10.50573 -9.85513 -9.63523 -9.46553 -8.79115 -7.97952 -5.26124 0.40257 0.54359 1.33260 1.45264 1.50085 1.65604 2.37561 2.50942 2.91146 3.10194 3.30265 3.39262 3.57558 3.58271 3.86833 3.92117 3.97954 4.04604 4.22471 4.24282 4.29100 4.35175 4.36930 4.43334 4.54274 4.67468 4.70219 4.73768 4.82901 4.84457 4.85622 4.90396 4.92572 4.96112 5.01540 5.03944 5.07826 5.09070 5.11559 5.17308 5.26401 5.29479 5.42704 5.45978 5.52047 5.53310 5.64110 5.73675 5.74345 5.86511 5.99581 6.16313 6.32429 6.69471 7.02075 7.32123 7.77161 8.16251 9.17320 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.004258 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.840924 B = 6574.448403 C = 7878.122810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.091 4.091 5 C -0.126 4.126 6 C 0.165 3.835 7 H 0.051 0.949 8 C 0.139 3.861 9 N -0.693 5.693 10 C 0.525 3.475 11 O -0.587 6.587 12 C -0.069 4.069 13 H 0.137 0.863 14 C -0.041 4.041 15 C -0.133 4.133 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.133 4.133 19 C -0.092 4.092 20 C -0.148 4.148 21 N -0.609 5.609 22 C -0.226 4.226 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.930 5.930 26 Si 0.916 3.084 27 H -0.298 1.298 28 H -0.325 1.325 29 H -0.259 1.259 30 C 0.137 3.863 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.411 0.589 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.147 0.853 47 H 0.154 0.846 48 H 0.122 0.878 49 H 0.114 0.886 50 H 0.253 0.747 51 H 0.026 0.974 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -6.839 5.852 9.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.178 4.178 4 C -0.128 4.128 5 C -0.166 4.166 6 C 0.059 3.941 7 H 0.069 0.931 8 C 0.015 3.985 9 N -0.342 5.342 10 C 0.312 3.688 11 O -0.469 6.469 12 C -0.090 4.090 13 H 0.155 0.845 14 C -0.078 4.078 15 C -0.133 4.133 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.151 4.151 19 C -0.110 4.110 20 C -0.148 4.148 21 N -0.334 5.334 22 C -0.356 4.356 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.576 5.576 26 Si 0.748 3.252 27 H -0.226 1.226 28 H -0.255 1.255 29 H -0.183 1.183 30 C 0.012 3.988 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.247 0.753 44 H 0.146 0.854 45 H 0.114 0.886 46 H 0.165 0.835 47 H 0.172 0.828 48 H 0.140 0.860 49 H 0.132 0.868 50 H 0.063 0.937 51 H 0.044 0.956 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.651 -6.480 6.299 9.418 hybrid contribution -1.542 0.074 -1.487 2.144 sum 1.109 -6.407 4.811 8.088 Atomic orbital electron populations 1.21796 0.93771 1.01974 1.01798 1.21014 0.95553 0.95788 0.96193 1.21646 1.00892 0.95250 0.99977 1.21407 0.94634 1.00272 0.96502 1.21962 0.96517 1.00867 0.97215 1.20909 0.89916 0.95941 0.87312 0.93096 1.21256 0.93943 0.95695 0.87617 1.46031 1.06385 1.55178 1.26621 1.20373 0.82485 0.78780 0.87206 1.90592 1.57298 1.51627 1.47336 1.21225 0.99514 0.98797 0.89457 0.84540 1.21365 0.92231 0.99222 0.94993 1.22190 0.94981 0.98665 0.97432 1.20674 1.00841 0.96747 0.94478 1.21325 0.93518 0.98747 0.99407 1.21127 0.95301 0.99636 0.99044 1.20961 1.01261 0.94742 0.94066 1.21463 0.96543 0.99763 0.97037 1.44481 1.01084 1.70563 1.17249 1.18855 0.96407 1.34369 0.85951 0.91192 1.25467 0.98921 1.00069 0.96460 1.69966 1.44090 1.37892 1.05671 0.86439 0.81692 0.81639 0.75402 1.22636 1.25484 1.18326 1.21398 0.83889 0.96795 0.96749 0.90738 0.94174 0.92136 0.93598 0.95555 0.91774 0.91626 0.90361 0.89643 0.92496 0.90394 0.94696 0.75257 0.85398 0.88585 0.83513 0.82839 0.85954 0.86818 0.93736 0.95576 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.48 71.98 0.61 -2.90 16 2 C -0.08 -2.58 0.77 -52.11 -0.04 -2.62 16 3 C -0.12 -4.00 7.99 71.98 0.57 -3.43 16 4 C -0.09 -2.29 4.71 30.62 0.14 -2.14 16 5 C -0.13 -3.47 5.03 30.67 0.15 -3.32 16 6 C 0.16 5.50 3.02 44.97 0.14 5.64 16 7 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 8 C 0.14 4.99 4.44 86.38 0.38 5.37 16 9 N -0.69 -25.93 3.87 -463.08 -1.79 -27.72 16 10 C 0.52 19.97 7.35 87.66 0.64 20.62 16 11 O -0.59 -25.25 15.69 -3.03 -0.05 -25.30 16 12 C -0.07 -2.24 4.27 -12.76 -0.05 -2.29 16 13 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 14 C -0.04 -1.14 7.69 29.37 0.23 -0.91 16 15 C -0.13 -4.27 7.42 -20.08 -0.15 -4.42 16 16 C -0.11 -3.15 10.06 22.36 0.22 -2.92 16 17 C -0.11 -3.33 10.04 22.23 0.22 -3.10 16 18 C -0.13 -4.89 10.04 22.23 0.22 -4.66 16 19 C -0.09 -3.88 10.06 22.36 0.22 -3.65 16 20 C -0.15 -5.54 6.90 -20.08 -0.14 -5.68 16 21 N -0.61 -24.89 2.24 -675.24 -1.51 -26.40 16 22 C -0.23 -11.13 7.62 84.04 0.64 -10.49 16 23 H 0.07 3.88 5.69 -2.91 -0.02 3.86 16 24 C -0.01 -0.71 5.17 84.86 0.44 -0.27 16 25 N -0.93 -52.82 12.71 21.65 0.28 -52.55 16 26 Si 0.92 43.60 24.34 68.60 1.67 45.27 16 27 H -0.30 -14.29 6.67 99.48 0.66 -13.63 16 28 H -0.32 -16.28 7.11 99.48 0.71 -15.57 16 29 H -0.26 -11.58 6.49 99.48 0.65 -10.93 16 30 C 0.14 5.33 2.88 86.36 0.25 5.58 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.74 5.97 -2.39 -0.01 1.73 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.06 1.74 6.34 -2.39 -0.02 1.73 16 41 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 42 H 0.03 1.48 7.43 -2.39 -0.02 1.46 16 43 H 0.41 15.66 7.22 -92.71 -0.67 14.99 16 44 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.10 2.86 7.04 -2.38 -0.02 2.84 16 46 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 47 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 48 H 0.12 4.34 8.06 -2.90 -0.02 4.32 16 49 H 0.11 5.59 6.69 -2.91 -0.02 5.57 16 50 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.03 1.01 7.07 -2.39 -0.02 0.99 16 52 H 0.04 1.87 4.25 -2.39 -0.01 1.86 16 Total: -1.00 -64.71 390.91 3.45 -61.26 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.15 Total: 41.05 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.71 Total: -15.61 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -3.03 Total: -106.67 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -64.71 3.45 -61.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.680 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds