Wall clock time and date at job start Wed Apr 1 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.49732 * 2 1 4 4 C 1.53042 * 109.50121 * 239.90058 * 2 1 3 5 5 C 1.53042 * 109.53504 * 301.41733 * 4 2 1 6 6 C 1.53193 * 109.31235 * 298.62682 * 5 4 2 7 7 H 1.09001 * 109.58835 * 294.85363 * 6 5 4 8 8 C 1.52995 * 109.58875 * 174.42455 * 6 5 4 9 9 N 1.46500 * 109.47277 * 180.50649 * 8 6 5 10 10 C 1.34781 * 119.99929 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99932 * 179.97438 * 10 9 8 13 13 H 1.09005 * 112.50734 * 50.32368 * 12 10 9 14 14 C 1.52886 * 113.16541 * 180.22511 * 12 10 9 15 15 C 1.51422 * 84.72975 * 115.22650 * 14 12 10 16 16 C 1.38953 * 145.52787 * 180.02562 * 15 14 12 17 17 C 1.37978 * 120.32369 * 179.97438 * 16 15 14 18 18 C 1.38239 * 120.17717 * 359.97438 * 17 16 15 19 19 C 1.38179 * 119.74725 * 0.02562 * 18 17 16 20 20 C 1.38226 * 120.12770 * 0.02562 * 19 18 17 21 21 N 1.46934 * 108.77017 * 54.63982 * 6 5 4 22 22 C 1.36936 * 120.62729 * 126.66501 * 21 6 5 23 23 H 1.08000 * 120.00217 * 328.00098 * 22 21 6 24 24 C 1.38813 * 119.99641 * 147.99648 * 22 21 6 25 25 N 1.31616 * 120.00307 * 347.91429 * 24 22 21 26 26 Si 1.86799 * 119.99823 * 167.91936 * 24 22 21 27 27 H 1.48501 * 109.47162 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47192 * 120.00097 * 26 24 22 29 29 H 1.48498 * 109.47314 * 239.99835 * 26 24 22 30 30 C 1.46920 * 118.73767 * 306.38943 * 21 6 5 31 31 H 1.08995 * 109.47244 * 299.93451 * 1 2 3 32 32 H 1.09004 * 109.46796 * 59.94061 * 1 2 3 33 33 H 1.09006 * 109.47099 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47329 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46811 * 300.05872 * 3 2 1 36 36 H 1.09000 * 109.47486 * 60.06245 * 3 2 1 37 37 H 1.08999 * 109.45914 * 61.43306 * 4 2 1 38 38 H 1.08991 * 109.46642 * 181.40791 * 4 2 1 39 39 H 1.09002 * 109.50314 * 58.58283 * 5 4 2 40 40 H 1.09006 * 109.49700 * 178.64898 * 5 4 2 41 41 H 1.09003 * 109.47261 * 300.51041 * 8 6 5 42 42 H 1.08998 * 109.47047 * 60.50449 * 8 6 5 43 43 H 0.96995 * 119.99913 * 359.97438 * 9 8 6 44 44 H 1.09000 * 113.98388 * 229.16833 * 14 12 10 45 45 H 1.08996 * 113.99088 * 1.27565 * 14 12 10 46 46 H 1.08002 * 119.83904 * 0.02562 * 16 15 14 47 47 H 1.07991 * 119.91162 * 180.02562 * 17 16 15 48 48 H 1.08001 * 120.12716 * 179.97438 * 18 17 16 49 49 H 1.08002 * 119.93553 * 180.02562 * 19 18 17 50 50 H 0.97001 * 120.00222 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.58208 * 173.40179 * 30 21 6 52 52 H 1.09000 * 109.58780 * 293.81949 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0409 -0.7235 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0141 -2.9041 -0.0299 7 1 3.0980 -3.0043 -0.0858 8 6 1.3704 -4.2906 0.0331 9 7 1.8516 -4.9989 1.2218 10 6 1.4168 -6.2474 1.4844 11 8 0.6270 -6.7842 0.7368 12 6 1.9122 -6.9762 2.7068 13 1 1.8227 -6.3783 3.6139 14 6 1.3239 -8.3800 2.8497 15 6 2.7511 -8.8466 2.6541 16 6 3.5952 -9.9472 2.5702 17 6 4.9478 -9.7733 2.3605 18 6 5.4732 -8.5011 2.2317 19 6 4.6385 -7.4031 2.3143 20 6 3.2834 -7.5759 2.5254 21 7 1.6515 -2.1378 1.1703 22 6 0.9684 -2.7321 2.1975 23 1 0.2626 -3.5229 1.9905 24 6 1.1831 -2.3181 3.5050 25 7 2.2008 -1.5329 3.7879 26 14 0.0278 -2.8756 4.8628 27 1 -1.0280 -3.7473 4.2876 28 1 0.7937 -3.6347 5.8838 29 1 -0.6004 -1.6887 5.4967 30 6 2.0413 -0.7234 1.2498 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1306 1.4418 -0.0005 35 1 1.6767 1.9565 -0.8895 36 1 1.6785 1.9560 0.8905 37 1 1.6989 -0.1965 -2.1388 38 1 3.1305 -0.7450 -1.2350 39 1 0.4133 -2.1359 -1.2534 40 1 1.8477 -2.6634 -2.1665 41 1 0.2867 -4.1860 0.0862 42 1 1.6374 -4.8560 -0.8597 43 1 2.4835 -4.5696 1.8194 44 1 0.9200 -8.5925 3.8396 45 1 0.6503 -8.6627 2.0408 46 1 3.1904 -10.9436 2.6687 47 1 5.5977 -10.6334 2.2959 48 1 6.5321 -8.3660 2.0680 49 1 5.0456 -6.4078 2.2137 50 1 2.3506 -1.2433 4.7015 51 1 1.6007 -0.2725 2.1390 52 1 3.1275 -0.6459 1.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089689570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:19 Heat of formation + Delta-G solvation = 38.991809 kcal Electronic energy + Delta-G solvation = -31287.989241 eV Core-core repulsion = 27446.715235 eV Total energy + Delta-G solvation = -3841.274006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.82170 -39.01390 -38.17184 -35.39215 -34.80410 -33.20562 -32.14667 -30.72392 -30.00836 -28.04678 -27.16621 -26.61418 -25.50791 -25.07702 -23.21841 -22.27792 -21.81918 -20.66653 -20.12286 -19.16641 -17.91360 -17.19298 -16.59457 -16.20647 -15.60483 -15.47754 -14.97571 -14.66348 -14.23239 -14.07030 -13.98489 -13.69802 -13.64361 -13.30677 -12.99588 -12.97903 -12.86511 -12.37577 -12.36731 -12.18630 -11.95173 -11.73239 -11.60344 -11.40129 -11.29628 -11.15428 -10.91841 -10.87344 -10.79482 -10.60913 -10.42291 -10.41767 -10.12977 -10.07493 -9.80655 -9.56694 -9.41750 -9.26645 -8.75494 -8.60393 -8.44881 -8.21812 -6.65124 -5.86134 -3.33641 1.34632 1.42794 3.10546 3.28136 3.38921 3.41409 3.72169 3.92143 4.28599 4.39933 4.48153 4.67728 5.04212 5.14645 5.18490 5.27859 5.32053 5.44527 5.49179 5.53948 5.60550 5.64476 5.66385 5.75110 5.76675 5.88097 5.94549 6.02383 6.08011 6.12337 6.17251 6.22116 6.24138 6.32963 6.36780 6.40803 6.45209 6.47267 6.47961 6.51551 6.52296 6.65139 6.80578 6.90375 6.93683 7.01739 7.02249 7.11766 7.18979 7.37834 7.66112 7.77315 8.25676 8.39397 8.85028 9.14507 9.75465 10.34289 11.20187 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.003662 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.894506 B = 7644.988745 C = 8503.657795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.030 0.970 8 C 0.135 3.865 9 N -0.687 5.687 10 C 0.524 3.476 11 O -0.561 6.561 12 C -0.067 4.067 13 H 0.119 0.881 14 C -0.060 4.060 15 C -0.118 4.118 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.082 4.082 20 C -0.115 4.115 21 N -0.585 5.585 22 C -0.247 4.247 23 H 0.070 0.930 24 C 0.009 3.991 25 N -0.899 5.899 26 Si 0.887 3.113 27 H -0.276 1.276 28 H -0.289 1.289 29 H -0.289 1.289 30 C 0.188 3.812 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.416 0.584 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.122 0.878 50 H 0.253 0.747 51 H 0.086 0.914 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -7.102 -4.290 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.048 0.952 8 C 0.011 3.989 9 N -0.337 5.337 10 C 0.309 3.691 11 O -0.441 6.441 12 C -0.088 4.088 13 H 0.137 0.863 14 C -0.097 4.097 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.137 4.137 18 C -0.139 4.139 19 C -0.100 4.100 20 C -0.115 4.115 21 N -0.308 5.308 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.190 4.190 25 N -0.543 5.543 26 Si 0.717 3.283 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.216 1.216 30 C 0.063 3.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.115 0.885 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.140 0.860 50 H 0.063 0.937 51 H 0.104 0.896 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.525 -7.403 -4.655 9.429 hybrid contribution -0.131 0.185 1.173 1.195 sum 3.394 -7.218 -3.482 8.703 Atomic orbital electron populations 1.21702 0.95152 1.02071 0.99216 1.21247 0.95849 0.94386 0.98209 1.21756 1.00354 0.96510 1.00501 1.21406 0.99573 0.95348 0.96985 1.22005 1.01298 0.96052 0.97593 1.20729 0.95930 0.89346 0.88649 0.95202 1.21285 0.99535 0.91688 0.86401 1.45963 1.46461 1.13996 1.27248 1.19886 0.81291 0.81863 0.86046 1.90618 1.35802 1.67752 1.49904 1.21338 0.90845 0.97567 0.99070 0.86322 1.21731 0.92804 0.91430 1.03726 1.22411 0.96690 0.93998 0.98747 1.20499 0.92834 0.97802 1.01056 1.20929 0.94707 0.97281 1.00815 1.20980 0.99452 0.92249 1.01252 1.20283 0.91160 0.99404 0.99167 1.21305 0.93294 0.96577 1.00343 1.44042 1.65609 1.05633 1.15551 1.19213 1.15892 1.17905 0.84708 0.91257 1.25078 0.96644 1.00038 0.97221 1.69990 1.27774 1.37890 1.18608 0.86443 0.80926 0.78334 0.82574 1.20112 1.21601 1.21555 1.20802 0.95986 0.83104 0.93840 0.93662 0.95073 0.91592 0.93357 0.93985 0.93057 0.93675 0.92972 0.91633 0.93187 0.91594 0.92855 0.74640 0.88518 0.87030 0.86596 0.85968 0.85630 0.85951 0.93676 0.89595 0.96546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 7.99 37.16 0.30 -1.89 16 2 C -0.10 -1.67 0.77 -154.39 -0.12 -1.79 16 3 C -0.13 -2.08 8.48 37.16 0.32 -1.77 16 4 C -0.10 -1.53 4.71 -26.69 -0.13 -1.66 16 5 C -0.13 -2.12 5.03 -26.61 -0.13 -2.26 16 6 C 0.16 3.00 3.01 -67.60 -0.20 2.80 16 7 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 8 C 0.13 2.51 4.43 -4.04 -0.02 2.49 16 9 N -0.69 -12.97 3.85 -60.30 -0.23 -13.20 16 10 C 0.52 9.88 7.33 -10.98 -0.08 9.80 16 11 O -0.56 -11.92 15.66 5.56 0.09 -11.83 16 12 C -0.07 -1.08 4.14 -96.60 -0.40 -1.48 16 13 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 14 C -0.06 -0.85 7.91 -27.59 -0.22 -1.07 16 15 C -0.12 -1.70 7.32 -107.60 -0.79 -2.49 16 16 C -0.10 -1.30 10.05 -39.41 -0.40 -1.69 16 17 C -0.12 -1.36 10.03 -39.68 -0.40 -1.76 16 18 C -0.12 -1.45 10.06 -39.60 -0.40 -1.85 16 19 C -0.08 -1.15 10.04 -39.61 -0.40 -1.55 16 20 C -0.11 -1.76 7.05 -104.55 -0.74 -2.50 16 21 N -0.58 -12.66 2.41 -164.77 -0.40 -13.06 16 22 C -0.25 -5.88 6.94 -15.06 -0.10 -5.98 16 23 H 0.07 1.71 5.89 -52.49 -0.31 1.41 16 24 C 0.01 0.24 5.01 -17.43 -0.09 0.15 16 25 N -0.90 -23.59 11.17 55.49 0.62 -22.97 16 26 Si 0.89 20.39 29.57 -169.99 -5.03 15.36 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 C 0.19 4.05 3.92 -3.71 -0.01 4.04 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.34 7.43 -51.93 -0.39 0.95 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.42 8.18 7.38 -40.82 -0.30 7.88 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.11 1.67 7.02 -51.93 -0.36 1.31 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 48 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 49 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 50 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 51 H 0.09 2.13 6.20 -51.93 -0.32 1.80 16 52 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -27.50 400.81 -11.56 -39.06 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.64 Total: 11.05 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -4.01 Total: -10.45 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.01 Total: -49.23 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -27.50 -11.56 -39.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.049 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds