Wall clock time and date at job start Wed Apr 1 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.49732 * 2 1 4 4 C 1.53042 * 109.50121 * 239.90058 * 2 1 3 5 5 C 1.53042 * 109.53504 * 301.41733 * 4 2 1 6 6 C 1.53193 * 109.31235 * 298.62682 * 5 4 2 7 7 H 1.09001 * 109.58835 * 294.85363 * 6 5 4 8 8 C 1.52995 * 109.58875 * 174.42455 * 6 5 4 9 9 N 1.46500 * 109.47277 * 180.50649 * 8 6 5 10 10 C 1.34781 * 119.99929 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99932 * 179.97438 * 10 9 8 13 13 H 1.09005 * 112.50734 * 50.32368 * 12 10 9 14 14 C 1.52886 * 113.16541 * 180.22511 * 12 10 9 15 15 C 1.51422 * 84.72975 * 115.22650 * 14 12 10 16 16 C 1.38953 * 145.52787 * 180.02562 * 15 14 12 17 17 C 1.37978 * 120.32369 * 179.97438 * 16 15 14 18 18 C 1.38239 * 120.17717 * 359.97438 * 17 16 15 19 19 C 1.38179 * 119.74725 * 0.02562 * 18 17 16 20 20 C 1.38226 * 120.12770 * 0.02562 * 19 18 17 21 21 N 1.46934 * 108.77017 * 54.63982 * 6 5 4 22 22 C 1.36936 * 120.62729 * 126.66501 * 21 6 5 23 23 H 1.08000 * 120.00217 * 328.00098 * 22 21 6 24 24 C 1.38813 * 119.99641 * 147.99648 * 22 21 6 25 25 N 1.31616 * 120.00307 * 347.91429 * 24 22 21 26 26 Si 1.86799 * 119.99823 * 167.91936 * 24 22 21 27 27 H 1.48501 * 109.47162 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47192 * 120.00097 * 26 24 22 29 29 H 1.48498 * 109.47314 * 239.99835 * 26 24 22 30 30 C 1.46920 * 118.73767 * 306.38943 * 21 6 5 31 31 H 1.08995 * 109.47244 * 299.93451 * 1 2 3 32 32 H 1.09004 * 109.46796 * 59.94061 * 1 2 3 33 33 H 1.09006 * 109.47099 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47329 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46811 * 300.05872 * 3 2 1 36 36 H 1.09000 * 109.47486 * 60.06245 * 3 2 1 37 37 H 1.08999 * 109.45914 * 61.43306 * 4 2 1 38 38 H 1.08991 * 109.46642 * 181.40791 * 4 2 1 39 39 H 1.09002 * 109.50314 * 58.58283 * 5 4 2 40 40 H 1.09006 * 109.49700 * 178.64898 * 5 4 2 41 41 H 1.09003 * 109.47261 * 300.51041 * 8 6 5 42 42 H 1.08998 * 109.47047 * 60.50449 * 8 6 5 43 43 H 0.96995 * 119.99913 * 359.97438 * 9 8 6 44 44 H 1.09000 * 113.98388 * 229.16833 * 14 12 10 45 45 H 1.08996 * 113.99088 * 1.27565 * 14 12 10 46 46 H 1.08002 * 119.83904 * 0.02562 * 16 15 14 47 47 H 1.07991 * 119.91162 * 180.02562 * 17 16 15 48 48 H 1.08001 * 120.12716 * 179.97438 * 18 17 16 49 49 H 1.08002 * 119.93553 * 180.02562 * 19 18 17 50 50 H 0.97001 * 120.00222 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.58208 * 173.40179 * 30 21 6 52 52 H 1.09000 * 109.58780 * 293.81949 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0409 -0.7235 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0141 -2.9041 -0.0299 7 1 3.0980 -3.0043 -0.0858 8 6 1.3704 -4.2906 0.0331 9 7 1.8516 -4.9989 1.2218 10 6 1.4168 -6.2474 1.4844 11 8 0.6270 -6.7842 0.7368 12 6 1.9122 -6.9762 2.7068 13 1 1.8227 -6.3783 3.6139 14 6 1.3239 -8.3800 2.8497 15 6 2.7511 -8.8466 2.6541 16 6 3.5952 -9.9472 2.5702 17 6 4.9478 -9.7733 2.3605 18 6 5.4732 -8.5011 2.2317 19 6 4.6385 -7.4031 2.3143 20 6 3.2834 -7.5759 2.5254 21 7 1.6515 -2.1378 1.1703 22 6 0.9684 -2.7321 2.1975 23 1 0.2626 -3.5229 1.9905 24 6 1.1831 -2.3181 3.5050 25 7 2.2008 -1.5329 3.7879 26 14 0.0278 -2.8756 4.8628 27 1 -1.0280 -3.7473 4.2876 28 1 0.7937 -3.6347 5.8838 29 1 -0.6004 -1.6887 5.4967 30 6 2.0413 -0.7234 1.2498 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1306 1.4418 -0.0005 35 1 1.6767 1.9565 -0.8895 36 1 1.6785 1.9560 0.8905 37 1 1.6989 -0.1965 -2.1388 38 1 3.1305 -0.7450 -1.2350 39 1 0.4133 -2.1359 -1.2534 40 1 1.8477 -2.6634 -2.1665 41 1 0.2867 -4.1860 0.0862 42 1 1.6374 -4.8560 -0.8597 43 1 2.4835 -4.5696 1.8194 44 1 0.9200 -8.5925 3.8396 45 1 0.6503 -8.6627 2.0408 46 1 3.1904 -10.9436 2.6687 47 1 5.5977 -10.6334 2.2959 48 1 6.5321 -8.3660 2.0680 49 1 5.0456 -6.4078 2.2137 50 1 2.3506 -1.2433 4.7015 51 1 1.6007 -0.2725 2.1390 52 1 3.1275 -0.6459 1.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089689570.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:18 Heat of formation + Delta-G solvation = 27.250856 kcal Electronic energy + Delta-G solvation = -31288.498367 eV Core-core repulsion = 27446.715235 eV Total energy + Delta-G solvation = -3841.783132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.01314 -40.49235 -39.59983 -36.74733 -36.08670 -34.98291 -33.67204 -31.74266 -31.71832 -29.38778 -28.32730 -28.01274 -27.32080 -26.32230 -24.66952 -23.82665 -22.95136 -21.82507 -21.70775 -20.51443 -19.46015 -18.64505 -17.85854 -17.68992 -17.20330 -16.88839 -16.22086 -16.04429 -15.79806 -15.47961 -15.41351 -15.17413 -15.06622 -14.73210 -14.56949 -14.10467 -13.93865 -13.79905 -13.75350 -13.51212 -13.15012 -13.01386 -12.95631 -12.90526 -12.81009 -12.74755 -12.50917 -12.49779 -12.19618 -12.11475 -11.92426 -11.86262 -11.64613 -11.50678 -11.26067 -11.04731 -10.90643 -10.80238 -10.48274 -9.84432 -9.77354 -9.52331 -8.49485 -7.79314 -5.26975 0.33275 0.42550 1.38897 1.46772 1.52346 1.63262 2.36952 2.50855 2.82461 3.14999 3.35635 3.44134 3.50345 3.59731 3.94487 4.00275 4.04279 4.19395 4.20618 4.20971 4.28475 4.32816 4.43005 4.52274 4.61771 4.67697 4.69586 4.74279 4.81269 4.87112 4.92752 4.93117 4.96141 5.01103 5.05846 5.09849 5.13899 5.14869 5.16153 5.26087 5.40563 5.45977 5.48462 5.54505 5.55571 5.59747 5.66211 5.74594 5.75881 5.82884 5.90265 6.05617 6.48392 6.69118 7.23280 7.30469 7.92056 8.46046 9.24390 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.003662 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.894506 B = 7644.988745 C = 8503.657795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.161 3.839 7 H 0.027 0.973 8 C 0.140 3.860 9 N -0.689 5.689 10 C 0.522 3.478 11 O -0.587 6.587 12 C -0.073 4.073 13 H 0.114 0.886 14 C -0.054 4.054 15 C -0.131 4.131 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.100 4.100 20 C -0.143 4.143 21 N -0.595 5.595 22 C -0.227 4.227 23 H 0.060 0.940 24 C -0.031 4.031 25 N -0.924 5.924 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.298 1.298 30 C 0.198 3.802 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.411 0.589 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.141 0.859 47 H 0.158 0.842 48 H 0.154 0.846 49 H 0.120 0.880 50 H 0.246 0.754 51 H 0.049 0.951 52 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -8.239 -5.935 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.163 4.163 6 C 0.055 3.945 7 H 0.045 0.955 8 C 0.016 3.984 9 N -0.337 5.337 10 C 0.309 3.691 11 O -0.470 6.470 12 C -0.094 4.094 13 H 0.132 0.868 14 C -0.090 4.090 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.118 4.118 20 C -0.144 4.144 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.078 0.922 24 C -0.228 4.228 25 N -0.571 5.571 26 Si 0.761 3.239 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.225 1.225 30 C 0.072 3.928 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.248 0.752 44 H 0.137 0.863 45 H 0.118 0.882 46 H 0.158 0.842 47 H 0.176 0.824 48 H 0.171 0.829 49 H 0.138 0.862 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 4.406 -8.546 -6.320 11.506 hybrid contribution -0.360 0.491 1.633 1.743 sum 4.046 -8.055 -4.687 10.160 Atomic orbital electron populations 1.21620 0.94984 1.00991 0.99837 1.21157 0.95879 0.95444 0.96920 1.21704 1.00512 0.95038 1.01356 1.21385 0.99610 0.94923 0.96922 1.21948 1.00980 0.96336 0.97066 1.20849 0.95735 0.89359 0.88534 0.95509 1.21246 0.98274 0.91941 0.86916 1.46015 1.46274 1.14207 1.27252 1.20381 0.80558 0.81622 0.86579 1.90588 1.36964 1.68269 1.51146 1.21374 0.92453 0.98243 0.97311 0.86777 1.21698 0.92933 0.89893 1.04513 1.22485 0.96581 0.94391 0.99631 1.20871 0.93231 0.98341 1.00196 1.21386 0.94700 0.98200 0.98787 1.21358 1.00587 0.91882 0.99997 1.20505 0.91049 1.00326 0.99918 1.21325 0.93502 0.96987 1.02561 1.44185 1.65456 1.06192 1.16003 1.19178 1.14793 1.16608 0.85160 0.92242 1.25470 0.97731 1.00958 0.98593 1.70103 1.29212 1.39541 1.18222 0.85752 0.79625 0.77429 0.81046 1.20266 1.21597 1.22506 1.20568 0.94217 0.83320 0.94654 0.95225 0.92195 0.93494 0.93115 0.91297 0.94006 0.90822 0.92861 0.92073 0.90439 0.93481 0.91481 0.75228 0.86327 0.88192 0.84161 0.82435 0.82880 0.86211 0.94429 0.93242 0.98961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 7.99 71.98 0.57 -3.41 16 2 C -0.09 -3.15 0.77 -52.10 -0.04 -3.19 16 3 C -0.13 -3.78 8.48 71.98 0.61 -3.17 16 4 C -0.09 -2.67 4.71 30.62 0.14 -2.53 16 5 C -0.12 -3.81 5.03 30.67 0.15 -3.65 16 6 C 0.16 6.00 3.01 44.97 0.14 6.13 16 7 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 8 C 0.14 5.26 4.43 86.38 0.38 5.64 16 9 N -0.69 -26.79 3.85 -463.06 -1.78 -28.57 16 10 C 0.52 20.26 7.33 87.66 0.64 20.90 16 11 O -0.59 -25.55 15.66 -3.04 -0.05 -25.60 16 12 C -0.07 -2.41 4.14 -14.67 -0.06 -2.47 16 13 H 0.11 3.77 8.14 -2.38 -0.02 3.75 16 14 C -0.05 -1.51 7.91 30.04 0.24 -1.27 16 15 C -0.13 -3.65 7.32 -21.79 -0.16 -3.81 16 16 C -0.11 -2.45 10.05 22.38 0.22 -2.22 16 17 C -0.11 -2.21 10.03 22.21 0.22 -1.99 16 18 C -0.12 -2.60 10.06 22.26 0.22 -2.38 16 19 C -0.10 -2.76 10.04 22.25 0.22 -2.53 16 20 C -0.14 -4.42 7.05 -19.82 -0.14 -4.56 16 21 N -0.59 -26.29 2.41 -675.22 -1.63 -27.92 16 22 C -0.23 -11.10 6.94 84.03 0.58 -10.52 16 23 H 0.06 3.04 5.89 -2.91 -0.02 3.02 16 24 C -0.03 -1.61 5.01 84.86 0.43 -1.19 16 25 N -0.92 -50.50 11.17 21.65 0.24 -50.26 16 26 Si 0.93 43.28 29.57 68.60 2.03 45.31 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 C 0.20 8.73 3.92 86.36 0.34 9.07 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.76 5.97 -2.38 -0.01 1.75 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.96 6.33 -2.39 -0.02 1.95 16 40 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.05 1.95 7.43 -2.39 -0.02 1.93 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.41 16.85 7.38 -92.71 -0.68 16.16 16 44 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.10 3.04 7.02 -2.39 -0.02 3.02 16 46 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 48 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 50 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 51 H 0.05 2.55 6.20 -2.38 -0.01 2.53 16 52 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -61.55 400.81 3.76 -57.79 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.22 Total: 36.40 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.72 Total: -7.16 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.17 Total: -106.75 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -61.55 3.76 -57.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089689570.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.041 kcal (2) G-P(sol) polarization free energy of solvation -61.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds