Wall clock time and date at job start Wed Apr 1 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 115.56215 * 2 1 4 4 C 1.53001 * 117.49610 * 145.68571 * 2 1 3 5 5 H 1.09002 * 117.50409 * 359.97438 * 4 2 1 6 6 C 1.50701 * 117.49963 * 214.97758 * 4 2 1 7 7 O 1.21284 * 120.00149 * 264.04789 * 6 4 2 8 8 N 1.34780 * 119.99968 * 84.03840 * 6 4 2 9 9 C 1.46498 * 120.00042 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47381 * 180.02562 * 9 8 6 11 11 C 1.53776 * 113.61510 * 185.00326 * 10 9 8 12 12 C 1.53785 * 87.07874 * 220.02187 * 11 10 9 13 13 N 1.46494 * 113.61336 * 139.98438 * 12 11 10 14 14 C 1.36943 * 119.99816 * 154.99985 * 13 12 11 15 15 H 1.08001 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99996 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00344 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47116 * 90.00149 * 18 16 14 20 20 H 1.48499 * 109.46816 * 330.00129 * 18 16 14 21 21 H 1.48499 * 109.47200 * 210.00604 * 18 16 14 22 22 C 1.53774 * 87.08460 * 25.43237 * 12 11 10 23 23 C 1.52995 * 59.99991 * 107.48917 * 4 2 1 24 24 H 1.09003 * 117.49897 * 107.48507 * 23 4 2 25 25 C 1.50703 * 117.50183 * 252.50827 * 23 4 2 26 26 C 1.38240 * 119.99474 * 8.33633 * 25 23 4 27 27 C 1.38232 * 119.99638 * 179.81090 * 26 25 23 28 28 C 1.38236 * 120.00273 * 0.41391 * 27 26 25 29 29 C 1.38236 * 119.99561 * 359.81837 * 28 27 26 30 30 C 1.38227 * 120.00317 * 188.60631 * 25 23 4 31 31 H 1.09008 * 109.47086 * 325.70325 * 1 2 3 32 32 H 1.08996 * 109.46955 * 85.70782 * 1 2 3 33 33 H 1.09001 * 109.47079 * 205.70521 * 1 2 3 34 34 H 1.09003 * 109.47231 * 200.33175 * 3 2 1 35 35 H 1.09007 * 109.46875 * 320.32740 * 3 2 1 36 36 H 1.08994 * 109.47658 * 80.32863 * 3 2 1 37 37 H 0.96998 * 120.00036 * 0.02562 * 8 6 4 38 38 H 1.09008 * 109.46976 * 60.01081 * 9 8 6 39 39 H 1.08999 * 109.47604 * 300.00657 * 9 8 6 40 40 H 1.09004 * 112.84753 * 316.20174 * 10 9 8 41 41 H 1.09000 * 113.61310 * 105.47479 * 11 10 9 42 42 H 1.08994 * 113.61670 * 334.56982 * 11 10 9 43 43 H 1.09008 * 113.61374 * 270.80066 * 12 11 10 44 44 H 0.96997 * 120.00738 * 334.99767 * 13 12 11 45 45 H 0.97003 * 119.99908 * 180.02562 * 17 16 14 46 46 H 1.09001 * 113.61572 * 89.11185 * 22 12 11 47 47 H 1.09003 * 113.61995 * 220.02297 * 22 12 11 48 48 H 1.08002 * 120.00158 * 359.97438 * 26 25 23 49 49 H 1.08001 * 119.99874 * 180.20355 * 27 26 25 50 50 H 1.08002 * 120.00210 * 179.78677 * 28 27 26 51 51 H 1.08008 * 119.99531 * 179.97438 * 29 28 27 52 52 H 1.08007 * 120.00146 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 0.7651 5 1 1.6112 -1.8582 1.2688 6 6 3.5292 -0.7811 1.4609 7 8 4.5888 -1.0013 0.9133 8 7 3.5081 -0.2323 2.6917 9 6 4.7648 0.0975 3.3684 10 6 4.4618 0.7024 4.7407 11 6 5.7128 1.1972 5.4857 12 6 5.0810 0.6241 6.7653 13 7 6.0432 -0.0399 7.6481 14 6 5.7858 -0.1400 8.9894 15 1 4.8737 0.2709 9.3965 16 6 6.6977 -0.7687 9.8261 17 7 6.4502 -0.8654 11.1152 18 14 8.2756 -1.4789 9.1222 19 1 9.3401 -0.4439 9.1505 20 1 8.0421 -1.9107 7.7207 21 1 8.6990 -2.6468 9.9359 22 6 4.3085 -0.3456 5.8556 23 6 2.2364 -1.1211 -0.7649 24 1 3.1715 -0.8752 -1.2682 25 6 1.3720 -2.1407 -1.4607 26 6 0.4894 -2.9132 -0.7291 27 6 -0.3063 -3.8458 -1.3678 28 6 -0.2134 -4.0119 -2.7370 29 6 0.6727 -3.2427 -3.4679 30 6 1.4656 -2.3074 -2.8297 31 1 -0.3634 0.8490 0.5791 32 1 -0.3633 0.0769 -1.0248 33 1 -0.3633 -0.9260 0.4457 34 1 3.2163 1.2922 -0.3571 35 1 1.6333 2.0493 -0.6561 36 1 2.1912 1.7825 1.0130 37 1 2.6607 -0.0565 3.1298 38 1 5.3223 0.8173 2.7688 39 1 5.3585 -0.8080 3.4940 40 1 3.6532 1.4329 4.7120 41 1 5.8137 2.2825 5.4968 42 1 6.6291 0.6889 5.1857 43 1 4.4423 1.3331 7.2923 44 1 6.8625 -0.4087 7.2828 45 1 7.0876 -1.3045 11.6999 46 1 4.8410 -1.2757 5.6567 47 1 3.2757 -0.5058 6.1652 48 1 0.4197 -2.7863 0.3412 49 1 -0.9982 -4.4470 -0.7967 50 1 -0.8326 -4.7429 -3.2356 51 1 0.7456 -3.3727 -4.5377 52 1 2.1580 -1.7066 -3.4008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091029605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:44 Heat of formation + Delta-G solvation = 36.587128 kcal Electronic energy + Delta-G solvation = -28822.726232 eV Core-core repulsion = 24981.347951 eV Total energy + Delta-G solvation = -3841.378281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.96625 -39.50512 -38.67577 -37.42966 -34.76932 -33.32784 -31.71214 -31.27789 -30.79654 -29.57123 -27.85341 -27.71338 -25.23100 -24.78215 -23.57514 -22.83475 -21.98086 -20.99164 -20.14075 -19.58683 -19.12343 -17.68405 -17.42359 -16.59743 -16.16754 -15.81207 -15.42229 -15.37109 -14.86909 -14.72270 -14.46564 -14.29290 -14.15886 -13.78008 -13.73996 -13.37428 -13.12206 -12.95386 -12.77152 -12.74630 -12.67927 -12.45475 -12.22308 -12.00046 -11.88314 -11.64060 -11.60906 -11.38274 -11.25665 -10.91187 -10.75178 -10.51535 -10.46387 -10.21707 -10.15994 -9.86925 -9.78126 -9.55776 -9.25827 -9.09610 -8.91323 -8.86175 -7.28600 -5.80061 -3.15599 0.95028 1.05534 2.41926 2.94125 3.20215 3.36597 3.39783 3.44485 3.61845 4.12780 4.25188 4.33480 4.51995 4.56824 4.58802 4.64570 4.72566 4.79276 4.80857 4.85547 4.95347 5.10092 5.12820 5.19349 5.21783 5.25597 5.37120 5.40569 5.45029 5.53012 5.54090 5.61995 5.63224 5.66285 5.70759 5.71565 5.76983 5.78784 5.83275 5.90883 6.13121 6.15486 6.16825 6.17276 6.21465 6.28327 6.37389 6.48272 6.64213 6.66510 6.96104 7.41188 7.96270 8.12787 8.39754 9.17608 9.90442 10.10151 11.38086 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.001827 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.129292 B =15324.078443 C =15754.710946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.177 4.177 5 H 0.131 0.869 6 C 0.544 3.456 7 O -0.541 6.541 8 N -0.719 5.719 9 C 0.132 3.868 10 C -0.126 4.126 11 C -0.145 4.145 12 C 0.172 3.828 13 N -0.737 5.737 14 C -0.248 4.248 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.277 1.277 21 H -0.291 1.291 22 C -0.161 4.161 23 C -0.079 4.079 24 H 0.122 0.878 25 C -0.045 4.045 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.111 4.111 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 0.740 -30.270 34.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.089 4.089 3 C -0.179 4.179 4 C -0.198 4.198 5 H 0.148 0.852 6 C 0.329 3.671 7 O -0.418 6.418 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.145 4.145 11 C -0.185 4.185 12 C 0.060 3.940 13 N -0.377 5.377 14 C -0.378 4.378 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.203 1.203 21 H -0.217 1.217 22 C -0.202 4.202 23 C -0.097 4.097 24 H 0.140 0.860 25 C -0.045 4.045 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.129 4.129 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.521 0.598 -30.359 34.102 hybrid contribution 0.792 -0.722 -0.104 1.077 sum -14.729 -0.124 -30.463 33.837 Atomic orbital electron populations 1.21434 0.91154 1.02457 1.02458 1.21726 0.95192 0.90867 1.01082 1.21425 1.00358 0.93525 1.02583 1.22676 0.98113 1.04001 0.94975 0.85183 1.19539 0.89524 0.76783 0.81234 1.90710 1.32100 1.53206 1.65772 1.45987 1.10273 1.63400 1.17339 1.21437 0.85404 1.00028 0.92273 1.22634 0.99931 0.99639 0.92319 1.23467 0.96706 1.00574 0.97774 1.21509 0.91336 0.93061 0.88072 1.42763 1.21477 1.67891 1.05538 1.19137 1.05183 1.31642 0.81877 0.89141 1.24698 0.98397 1.00747 0.95276 1.69706 1.36937 1.48690 1.02681 0.86556 0.84763 0.78986 0.78267 1.21014 1.20296 1.21695 1.23915 1.01274 0.98353 0.96616 1.21304 0.99952 0.97371 0.91100 0.85960 1.19057 0.96106 0.95894 0.93465 1.21084 0.96373 0.96259 0.99878 1.21136 0.99327 0.98242 0.94799 1.21159 0.99102 0.99769 0.94336 1.21135 0.96354 0.96187 0.99908 1.20960 0.99604 0.98586 0.93757 0.91659 0.91683 0.91855 0.92007 0.91439 0.91537 0.76444 0.91750 0.91375 0.89083 0.91617 0.90361 0.89790 0.80449 0.93029 0.90485 0.92308 0.85991 0.86019 0.86178 0.86040 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 8.61 37.16 0.32 -0.39 16 2 C -0.09 -0.65 2.70 -154.51 -0.42 -1.07 16 3 C -0.12 -0.89 8.85 37.16 0.33 -0.56 16 4 C -0.18 -1.58 5.16 -91.77 -0.47 -2.06 16 5 H 0.13 1.00 6.08 -51.93 -0.32 0.68 16 6 C 0.54 6.48 6.44 -10.98 -0.07 6.41 16 7 O -0.54 -8.70 16.61 5.55 0.09 -8.61 16 8 N -0.72 -7.50 5.56 -60.29 -0.33 -7.84 16 9 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 10 C -0.13 -1.53 3.75 -89.81 -0.34 -1.87 16 11 C -0.15 -2.11 7.39 -25.92 -0.19 -2.30 16 12 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 13 N -0.74 -17.15 5.21 -52.64 -0.27 -17.43 16 14 C -0.25 -6.94 10.45 -15.06 -0.16 -7.09 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 16 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 17 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 18 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 C -0.16 -2.47 7.43 -25.92 -0.19 -2.67 16 23 C -0.08 -0.70 5.20 -91.77 -0.48 -1.18 16 24 H 0.12 1.25 7.87 -51.93 -0.41 0.84 16 25 C -0.05 -0.38 5.04 -104.62 -0.53 -0.91 16 26 C -0.12 -0.92 7.78 -39.58 -0.31 -1.23 16 27 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 28 C -0.13 -0.87 10.05 -39.58 -0.40 -1.26 16 29 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 30 C -0.11 -0.88 9.74 -39.59 -0.39 -1.27 16 31 H 0.06 0.34 8.09 -51.92 -0.42 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.36 5.94 -51.93 -0.31 0.05 16 34 H 0.06 0.54 7.81 -51.93 -0.41 0.14 16 35 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 3.26 8.47 -40.82 -0.35 2.91 16 38 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.08 1.54 8.10 -51.92 -0.42 1.12 16 44 H 0.36 8.36 5.78 -40.82 -0.24 8.12 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.12 0.82 5.19 -52.49 -0.27 0.55 16 49 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 50 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 51 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 52 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 416.72 15.07 6.28 6.28 Total: -1.00 -33.57 416.72 -11.29 -44.86 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.61 Total: 9.18 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -4.50 Total: -15.48 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.17 Total: -53.67 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.57 -11.29 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091029605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.447 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds