Wall clock time and date at job start Wed Apr 1 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46842 * 2 1 4 4 C 1.38254 * 119.99724 * 265.01825 * 3 2 1 5 5 C 1.38214 * 119.99915 * 180.02562 * 4 3 2 6 6 C 1.38248 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.38207 * 119.99969 * 359.74150 * 6 5 4 8 8 C 1.38207 * 119.99985 * 85.00276 * 3 2 1 9 9 C 1.50695 * 120.00335 * 359.97438 * 8 3 2 10 10 H 1.08998 * 115.56297 * 334.31800 * 9 8 3 11 11 C 1.53003 * 117.50038 * 188.62505 * 9 8 3 12 12 C 1.53000 * 117.49792 * 120.00171 * 9 8 3 13 13 H 1.08999 * 117.51799 * 0.02562 * 12 9 8 14 14 C 1.50699 * 117.50171 * 214.97941 * 12 9 8 15 15 O 1.21281 * 119.99785 * 359.97438 * 14 12 9 16 16 N 1.34772 * 120.00326 * 179.97438 * 14 12 9 17 17 C 1.46494 * 120.00463 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47391 * 180.02562 * 17 16 14 19 19 C 1.53786 * 113.61361 * 184.99937 * 18 17 16 20 20 C 1.53781 * 87.17350 * 220.06273 * 19 18 17 21 21 N 1.46501 * 113.61619 * 270.84587 * 20 19 18 22 22 C 1.36932 * 119.99939 * 205.00090 * 21 20 19 23 23 H 1.08001 * 120.00293 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00189 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00391 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99630 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47028 * 90.00012 * 26 24 22 28 28 H 1.48496 * 109.47213 * 210.00326 * 26 24 22 29 29 H 1.48509 * 109.47361 * 329.99928 * 26 24 22 30 30 C 1.53782 * 87.08260 * 25.39213 * 20 19 18 31 31 H 1.09006 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47689 * 300.00068 * 1 2 3 33 33 H 1.09003 * 109.47121 * 60.00358 * 1 2 3 34 34 H 1.08998 * 109.47322 * 239.99547 * 2 1 3 35 35 H 1.09003 * 109.47121 * 119.99642 * 2 1 3 36 36 H 1.08004 * 119.99963 * 359.97438 * 4 3 2 37 37 H 1.08009 * 119.99603 * 179.97438 * 5 4 3 38 38 H 1.08005 * 119.99558 * 179.97438 * 6 5 4 39 39 H 1.08008 * 119.99753 * 180.28179 * 7 6 5 40 40 H 1.08998 * 117.49876 * 145.02372 * 11 9 8 41 41 H 1.08994 * 117.51478 * 359.97438 * 11 9 8 42 42 H 0.97000 * 119.99857 * 0.02562 * 16 14 12 43 43 H 1.09002 * 109.47287 * 60.00002 * 17 16 14 44 44 H 1.09004 * 109.47020 * 300.00283 * 17 16 14 45 45 H 1.08993 * 112.90825 * 316.25137 * 18 17 16 46 46 H 1.09002 * 113.61357 * 105.47190 * 19 18 17 47 47 H 1.09002 * 113.61608 * 334.65352 * 19 18 17 48 48 H 1.09001 * 113.61695 * 139.93969 * 20 19 18 49 49 H 0.97001 * 119.99973 * 24.99171 * 21 20 19 50 50 H 0.96995 * 120.00333 * 179.97438 * 25 24 22 51 51 H 1.08997 * 113.61668 * 89.11298 * 30 20 19 52 52 H 1.08998 * 113.61674 * 219.93807 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8218 3.3408 -1.1928 6 6 2.9542 4.0272 -0.0001 7 6 2.6203 3.4123 1.1918 8 6 2.1643 2.1071 1.1924 9 6 1.8055 1.4349 2.4925 10 1 1.0737 0.6303 2.4196 11 6 1.7786 2.3024 3.7525 12 6 2.9091 1.2930 3.5425 13 1 3.8948 1.6862 3.2935 14 6 2.9013 0.0517 4.3970 15 8 2.0408 -0.7881 4.2385 16 7 3.8504 -0.1252 5.3374 17 6 3.8431 -1.3321 6.1677 18 6 5.0174 -1.2843 7.1473 19 6 5.1728 -2.5643 7.9854 20 6 5.5045 -1.6520 9.1781 21 7 6.9309 -1.3405 9.2998 22 6 7.4562 -1.0022 10.5182 23 1 6.8190 -0.9645 11.3894 24 6 8.8078 -0.7076 10.6337 25 7 9.3129 -0.3829 11.8049 26 14 9.9101 -0.7734 9.1270 27 1 9.9302 0.5581 8.4699 28 1 11.2883 -1.1436 9.5377 29 1 9.3881 -1.7872 8.1756 30 6 4.6936 -0.5570 8.4651 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.2577 1.5015 -2.1246 37 1 3.0788 3.8227 -2.1247 38 1 3.3150 5.0452 -0.0001 39 1 2.7194 3.9501 2.1232 40 1 1.0291 2.0685 4.5086 41 1 2.0208 3.3592 3.6415 42 1 4.5384 0.5467 5.4644 43 1 3.9362 -2.2118 5.5308 44 1 2.9076 -1.3842 6.7247 45 1 5.9451 -0.9520 6.6816 46 1 6.0060 -3.1932 7.6717 47 1 4.2441 -3.1219 8.1073 48 1 5.0607 -1.9823 10.1173 49 1 7.5031 -1.3741 8.5173 50 1 10.2574 -0.1774 11.8857 51 1 3.6333 -0.5647 8.7174 52 1 5.1393 0.4349 8.5397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091207170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:27 Heat of formation + Delta-G solvation = 32.870387 kcal Electronic energy + Delta-G solvation = -28601.085945 eV Core-core repulsion = 24759.546494 eV Total energy + Delta-G solvation = -3841.539451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -40.69679 -39.66107 -38.71603 -36.63789 -34.74191 -34.52369 -33.25034 -31.01083 -30.67129 -29.67091 -27.98416 -25.21755 -24.80076 -24.22224 -24.04182 -23.14327 -21.71556 -21.39861 -20.63423 -20.12172 -18.62466 -17.73626 -17.64627 -16.87766 -16.17451 -15.86926 -15.49095 -15.27249 -15.03325 -14.57313 -14.47225 -14.23221 -14.13786 -13.82211 -13.64321 -13.57017 -13.47370 -12.85980 -12.82335 -12.56440 -12.53441 -12.17295 -12.09393 -12.06919 -11.72998 -11.61105 -11.39563 -11.22284 -11.17790 -10.95867 -10.87476 -10.73327 -10.54971 -10.35408 -10.14969 -9.91340 -9.68978 -9.55645 -9.11691 -9.09212 -8.94776 -8.80686 -7.34061 -5.83093 -3.19390 0.94713 1.05178 2.35992 2.99807 3.31187 3.31857 3.34216 3.40423 3.73135 4.19654 4.37136 4.44959 4.51050 4.52613 4.55697 4.67299 4.77434 4.84748 4.87154 4.89208 4.92209 5.06646 5.07232 5.17105 5.18756 5.26023 5.33625 5.35406 5.40997 5.47715 5.54573 5.58288 5.67011 5.67439 5.71922 5.73545 5.82692 5.83571 5.88941 5.95967 6.09249 6.18125 6.19133 6.20576 6.31479 6.36051 6.45822 6.58967 6.66624 6.70692 6.85641 7.41968 7.94688 8.11755 8.36551 9.14239 9.86462 10.05695 11.34973 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.001911 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.381495 B =14646.990621 C =15558.627093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.178 4.178 13 H 0.124 0.876 14 C 0.541 3.459 15 O -0.545 6.545 16 N -0.720 5.720 17 C 0.131 3.869 18 C -0.124 4.124 19 C -0.149 4.149 20 C 0.172 3.828 21 N -0.730 5.730 22 C -0.247 4.247 23 H 0.092 0.908 24 C 0.005 3.995 25 N -0.931 5.931 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.277 1.277 30 C -0.166 4.166 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.403 0.597 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.072 0.928 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 6.299 -26.560 32.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.051 4.051 9 C -0.103 4.103 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.199 4.199 13 H 0.142 0.858 14 C 0.327 3.673 15 O -0.423 6.423 16 N -0.370 5.370 17 C 0.008 3.992 18 C -0.142 4.142 19 C -0.188 4.188 20 C 0.061 3.939 21 N -0.370 5.370 22 C -0.377 4.377 23 H 0.110 0.890 24 C -0.191 4.191 25 N -0.579 5.579 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.203 1.203 30 C -0.207 4.207 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.237 0.763 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.090 0.910 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.828 5.714 -26.369 32.339 hybrid contribution 1.456 0.460 -1.029 1.842 sum -16.371 6.174 -27.399 32.509 Atomic orbital electron populations 1.21742 0.94553 1.01936 1.02088 1.20604 0.96393 0.92527 1.03284 1.19734 0.98534 0.96249 0.92372 1.21034 0.99914 0.95194 0.97400 1.21142 0.99819 0.94811 0.98115 1.21104 1.00491 0.99997 0.92494 1.21069 0.99488 0.94477 0.98435 1.18967 0.99680 0.93740 0.92759 1.21122 1.00283 1.01776 0.87135 0.85250 1.23140 0.99067 0.96481 0.99459 1.22359 0.97096 0.97995 1.02477 0.85763 1.19582 0.81181 0.86607 0.79954 1.90687 1.37458 1.44751 1.69368 1.45988 1.30724 1.23842 1.36463 1.21475 0.98982 0.86527 0.92193 1.22780 0.97277 0.99691 0.94482 1.23462 1.01534 0.95924 0.97909 1.21002 0.85280 0.92332 0.95328 1.42509 1.03529 1.82753 1.08185 1.19112 0.93190 1.38790 0.86586 0.89020 1.24685 0.96633 1.01430 0.96309 1.69691 1.13139 1.52882 1.22155 0.86566 0.80875 0.77798 0.83377 1.21062 1.21633 1.20329 1.23886 1.00189 1.00845 0.95738 0.92225 0.92343 0.92728 0.91139 0.90247 0.86081 0.86151 0.86060 0.85804 0.87645 0.87361 0.76279 0.91790 0.91387 0.89256 0.91446 0.90009 0.91062 0.80528 0.92968 0.90967 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.74 37.16 0.36 -0.70 16 2 C -0.09 -0.73 5.38 -27.88 -0.15 -0.88 16 3 C -0.07 -0.60 5.13 -104.63 -0.54 -1.14 16 4 C -0.12 -0.92 9.68 -39.58 -0.38 -1.30 16 5 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 6 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 7 C -0.12 -0.93 9.30 -39.59 -0.37 -1.29 16 8 C -0.05 -0.46 5.61 -104.63 -0.59 -1.04 16 9 C -0.08 -0.77 4.66 -91.77 -0.43 -1.20 16 10 H 0.13 1.34 5.47 -51.93 -0.28 1.06 16 11 C -0.14 -1.14 9.56 -26.73 -0.26 -1.39 16 12 C -0.18 -1.65 5.82 -91.77 -0.53 -2.18 16 13 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.54 6.55 7.61 -10.99 -0.08 6.47 16 15 O -0.54 -8.42 16.26 5.56 0.09 -8.33 16 16 N -0.72 -8.09 5.56 -60.30 -0.33 -8.43 16 17 C 0.13 1.62 5.51 -4.05 -0.02 1.60 16 18 C -0.12 -1.67 3.64 -89.71 -0.33 -2.00 16 19 C -0.15 -2.18 7.38 -25.92 -0.19 -2.37 16 20 C 0.17 3.14 4.56 -67.12 -0.31 2.84 16 21 N -0.73 -16.61 5.11 -52.64 -0.27 -16.88 16 22 C -0.25 -6.81 10.45 -15.06 -0.16 -6.96 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 26 Si 0.88 21.59 27.73 -169.99 -4.71 16.88 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 30 C -0.17 -2.54 7.44 -25.82 -0.19 -2.73 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 7.17 -51.93 -0.37 0.08 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.08 0.74 6.94 -51.93 -0.36 0.38 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.79 6.02 -52.48 -0.32 0.47 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.11 0.66 6.17 -51.93 -0.32 0.34 16 42 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 48 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 49 H 0.36 8.08 5.76 -40.82 -0.24 7.84 16 50 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 51 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 52 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 418.14 15.07 6.30 6.30 Total: -1.00 -32.58 418.14 -11.76 -44.34 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.55 Total: 10.95 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -5.05 Total: -16.80 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.17 Total: -53.34 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.58 -11.76 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091207170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.210 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds