Wall clock time and date at job start Wed Apr 1 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47162 * 2 1 4 4 C 1.38253 * 119.99923 * 90.00040 * 3 2 1 5 5 C 1.38215 * 120.00294 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99734 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00088 * 0.02885 * 6 5 4 8 8 C 1.50700 * 119.99988 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47288 * 269.95383 * 8 7 6 10 10 O 1.21279 * 119.99935 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00108 * 180.02562 * 9 8 7 12 12 C 1.47220 * 126.70175 * 359.68871 * 11 9 8 13 13 C 1.54074 * 106.22495 * 148.66739 * 12 11 9 14 14 H 1.09001 * 112.46089 * 141.24752 * 13 12 11 15 15 C 1.53785 * 109.53238 * 266.28628 * 13 12 11 16 16 N 1.47212 * 106.37998 * 131.53424 * 15 13 12 17 17 C 1.36936 * 126.70532 * 148.72587 * 16 15 13 18 18 H 1.07997 * 119.99821 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99619 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99593 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47001 * 60.00566 * 21 19 17 23 23 H 1.48508 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47389 * 299.99966 * 21 19 17 25 25 C 1.47222 * 106.59313 * 328.72654 * 16 15 13 26 26 C 1.53784 * 106.37553 * 31.27418 * 25 16 15 27 27 C 1.52996 * 111.85932 * 104.04137 * 26 25 16 28 28 C 1.47221 * 126.70490 * 179.97438 * 11 9 8 29 29 C 1.38220 * 120.00025 * 269.98204 * 3 2 1 30 30 H 1.09002 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47037 * 299.99594 * 1 2 3 32 32 H 1.08997 * 109.47483 * 60.00032 * 1 2 3 33 33 H 1.09007 * 109.46887 * 240.00677 * 2 1 3 34 34 H 1.09000 * 109.47236 * 120.00420 * 2 1 3 35 35 H 1.08000 * 120.00399 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.00164 * 179.70679 * 5 4 3 37 37 H 1.08001 * 120.00211 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47203 * 29.95264 * 8 7 6 39 39 H 1.08999 * 109.47314 * 149.95482 * 8 7 6 40 40 H 1.09001 * 110.07198 * 267.97505 * 12 11 9 41 41 H 1.08996 * 110.07410 * 29.51690 * 12 11 9 42 42 H 1.09003 * 110.07075 * 12.30178 * 15 13 12 43 43 H 1.09003 * 110.11919 * 250.78989 * 15 13 12 44 44 H 0.97004 * 119.99531 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.07462 * 272.04344 * 25 16 15 46 46 H 1.09002 * 110.12200 * 150.52504 * 25 16 15 47 47 H 1.08996 * 109.47322 * 182.04038 * 27 26 25 48 48 H 1.09000 * 109.47269 * 302.04593 * 27 26 25 49 49 H 1.09008 * 109.47159 * 62.04484 * 27 26 25 50 50 H 1.09001 * 110.07198 * 330.48081 * 28 11 9 51 51 H 1.09005 * 110.07128 * 92.02068 * 28 11 9 52 52 H 1.07999 * 120.00153 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7230 3.3758 1.1974 6 6 2.9534 4.0275 0.0001 7 6 2.7230 3.3760 -1.1969 8 6 2.9747 4.0863 -2.5020 9 6 1.7190 4.7963 -2.9379 10 8 0.7183 4.7323 -2.2557 11 7 1.7080 5.5024 -4.0858 12 6 2.8328 5.6835 -5.0182 13 6 2.2113 5.8170 -6.4217 14 1 2.7230 6.5587 -7.0350 15 6 2.1758 4.4380 -7.1016 16 7 0.8138 4.2733 -7.6354 17 6 0.4529 3.5736 -8.7558 18 1 -0.5850 3.5231 -9.0499 19 6 1.4211 2.9284 -9.5129 20 7 2.6859 2.9896 -9.1541 21 14 0.9287 1.9733 -11.0409 22 1 0.2700 2.8894 -12.0063 23 1 2.1389 1.3825 -11.6668 24 1 -0.0139 0.8894 -10.6648 25 6 -0.0846 5.0078 -6.7294 26 6 0.7285 6.1908 -6.1776 27 6 0.3344 7.5118 -6.8413 28 6 0.5705 6.2481 -4.6493 29 6 2.2630 2.0722 -1.1970 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0824 1.5636 2.1326 36 1 2.8984 3.8864 2.1327 37 1 3.3134 5.0458 0.0001 38 1 3.7763 4.8132 -2.3713 39 1 3.2634 3.3596 -3.2614 40 1 3.3874 6.5869 -4.7644 41 1 3.4922 4.8164 -4.9818 42 1 2.3891 3.6560 -6.3728 43 1 2.9027 4.4012 -7.9130 44 1 3.3625 2.5389 -9.6834 45 1 -0.4039 4.3601 -5.9130 46 1 -0.9527 5.3739 -7.2776 47 1 0.9574 8.3155 -6.4490 48 1 0.4777 7.4339 -7.9190 49 1 -0.7128 7.7270 -6.6286 50 1 -0.3679 5.7797 -4.3524 51 1 0.5966 7.2834 -4.3092 52 1 2.0837 1.5629 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091794702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:52 Heat of formation + Delta-G solvation = 7.365561 kcal Electronic energy + Delta-G solvation = -30457.927006 eV Core-core repulsion = 26615.281583 eV Total energy + Delta-G solvation = -3842.645423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.39328 -39.50523 -38.08589 -34.95130 -34.45684 -32.94894 -32.30118 -30.86564 -30.03052 -29.55689 -28.07821 -26.22982 -25.41884 -25.09035 -23.98296 -22.62471 -21.97799 -20.57758 -20.26800 -19.09676 -18.48331 -16.96491 -16.61437 -16.50080 -15.99873 -15.39766 -15.30312 -14.85784 -14.72270 -14.21409 -13.90025 -13.78570 -13.65037 -13.45433 -13.35956 -13.10560 -13.02615 -12.66862 -12.56826 -12.17756 -12.02468 -11.95024 -11.75017 -11.73326 -11.59172 -11.38799 -11.29360 -11.00123 -10.93672 -10.87221 -10.79970 -10.76285 -10.18412 -10.12560 -9.98649 -9.78708 -9.64032 -9.49037 -8.76016 -8.73991 -8.59173 -8.37728 -6.90705 -5.67813 -3.12340 1.33985 1.42485 2.85216 3.21680 3.37970 3.42426 3.43364 3.80660 4.44777 4.62023 4.66835 4.71871 4.82288 4.91892 5.06412 5.09895 5.14812 5.19123 5.26457 5.28740 5.40368 5.46712 5.47541 5.51202 5.56950 5.59650 5.60124 5.65904 5.75164 5.80598 5.83073 5.91596 5.99873 6.04486 6.05931 6.09442 6.16035 6.17866 6.28681 6.37521 6.42281 6.45940 6.53661 6.58216 6.64360 6.64989 6.80045 6.93355 7.02478 7.40103 7.56991 7.77434 7.81669 8.35641 8.39454 9.17607 9.78329 10.46281 11.33279 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003041 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.136234 B = 9206.353528 C =10663.748161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.057 4.057 8 C -0.100 4.100 9 C 0.535 3.465 10 O -0.540 6.540 11 N -0.611 5.611 12 C 0.108 3.892 13 C -0.115 4.115 14 H 0.087 0.913 15 C 0.144 3.856 16 N -0.595 5.595 17 C -0.218 4.218 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.144 3.856 26 C -0.087 4.087 27 C -0.121 4.121 28 C 0.121 3.879 29 C -0.101 4.101 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.006 0.994 43 H 0.123 0.877 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.042 0.958 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 3.326 16.786 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.129 4.129 7 C -0.057 4.057 8 C -0.140 4.140 9 C 0.323 3.677 10 O -0.418 6.418 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.136 4.136 14 H 0.105 0.895 15 C 0.019 3.981 16 N -0.318 5.318 17 C -0.346 4.346 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.017 3.983 26 C -0.090 4.090 27 C -0.179 4.179 28 C -0.002 4.002 29 C -0.119 4.119 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.024 0.976 43 H 0.141 0.859 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.406 3.066 17.036 17.476 hybrid contribution -0.226 -0.418 -0.792 0.923 sum 2.181 2.648 16.245 16.603 Atomic orbital electron populations 1.21749 0.94669 1.01561 1.02495 1.20537 0.96315 0.92631 1.02668 1.19839 0.98983 0.96301 0.93051 1.20953 1.00621 0.95111 0.97285 1.21022 1.00006 0.94941 0.97696 1.20925 1.00674 0.99305 0.91993 1.19280 0.98858 0.93962 0.93601 1.20667 0.96734 1.00411 0.96183 1.20050 0.89905 0.78185 0.79516 1.90700 1.35433 1.62026 1.53609 1.48466 1.14092 1.50273 1.21615 1.22259 0.89073 1.01039 0.89129 1.23134 0.93898 1.02247 0.94297 0.89468 1.21981 0.90185 0.88235 0.97748 1.44491 1.02166 1.58767 1.26367 1.19058 0.93151 1.23330 0.99086 0.90471 1.24752 0.95403 1.00948 0.99567 1.69577 0.99514 1.48008 1.40042 0.86127 0.77050 0.79667 0.82521 1.21166 1.21530 1.21245 1.21442 0.93133 0.90714 0.92963 1.22153 0.96923 0.96986 0.92888 1.21609 1.00397 0.94706 1.01198 1.22041 0.90324 0.95228 0.92647 1.20911 0.98784 0.94374 0.97789 0.92493 0.92676 0.92236 0.90974 0.91241 0.86462 0.86286 0.86451 0.88140 0.87673 0.92077 0.90298 0.97633 0.85930 0.93621 0.96487 0.93961 0.93135 0.91646 0.92902 0.90535 0.92196 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.08 -0.85 6.06 -27.89 -0.17 -1.02 16 3 C -0.08 -1.00 5.13 -104.62 -0.54 -1.53 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 5 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 6 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 7 C -0.06 -0.77 4.37 -104.62 -0.46 -1.22 16 8 C -0.10 -1.30 4.81 -29.04 -0.14 -1.44 16 9 C 0.53 8.81 7.87 -10.99 -0.09 8.72 16 10 O -0.54 -10.73 16.27 5.56 0.09 -10.64 16 11 N -0.61 -9.72 3.32 -171.41 -0.57 -10.29 16 12 C 0.11 1.56 6.19 -3.09 -0.02 1.55 16 13 C -0.12 -2.00 3.70 -88.68 -0.33 -2.33 16 14 H 0.09 1.44 7.91 -51.93 -0.41 1.03 16 15 C 0.14 3.29 5.71 -3.24 -0.02 3.27 16 16 N -0.59 -14.84 3.39 -171.12 -0.58 -15.42 16 17 C -0.22 -5.96 10.34 -15.06 -0.16 -6.11 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -25.89 10.08 55.49 0.56 -25.33 16 21 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.14 3.02 6.37 -3.24 -0.02 3.00 16 26 C -0.09 -1.47 1.09 -152.74 -0.17 -1.64 16 27 C -0.12 -1.75 8.50 37.16 0.32 -1.43 16 28 C 0.12 1.92 5.94 -3.26 -0.02 1.90 16 29 C -0.10 -1.38 9.36 -39.58 -0.37 -1.75 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.11 1.32 7.81 -51.93 -0.41 0.91 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.11 6.70 -51.93 -0.35 0.76 16 42 H 0.01 0.14 7.42 -51.93 -0.39 -0.24 16 43 H 0.12 3.17 5.44 -51.93 -0.28 2.89 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.02 0.39 7.39 -51.93 -0.38 0.00 16 46 H 0.04 0.86 7.82 -51.93 -0.41 0.45 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 50 H 0.08 1.33 7.29 -51.93 -0.38 0.95 16 51 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 52 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -31.85 409.48 -11.28 -43.14 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.87 Total: 2.52 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.07 Total: -6.82 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.59 Total: -51.04 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.85 -11.28 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091794702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.503 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds