Wall clock time and date at job start Wed Apr 1 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 120.00005 * 2 1 4 4 C 1.38212 * 119.99826 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00105 * 359.73934 * 4 3 2 6 6 C 1.50698 * 120.00240 * 180.27623 * 5 4 3 7 7 C 1.38214 * 119.99966 * 0.51371 * 5 4 3 8 8 C 1.50703 * 120.00074 * 179.76104 * 7 5 4 9 9 C 1.50696 * 109.46710 * 84.72658 * 8 7 5 10 10 O 1.21273 * 120.00573 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99713 * 179.97438 * 9 8 7 12 12 C 1.47197 * 126.70493 * 0.02562 * 11 9 8 13 13 C 1.53746 * 106.43312 * 211.34054 * 12 11 9 14 14 H 1.08997 * 112.72302 * 104.04595 * 13 12 11 15 15 C 1.54458 * 109.01390 * 229.45700 * 13 12 11 16 16 N 1.48330 * 104.43517 * 137.42295 * 15 13 12 17 17 C 1.36933 * 128.20129 * 138.10200 * 16 15 13 18 18 H 1.08009 * 119.99752 * 344.11625 * 17 16 15 19 19 C 1.38818 * 120.00456 * 164.10943 * 17 16 15 20 20 N 1.31620 * 119.99368 * 350.54214 * 19 17 16 21 21 Si 1.86794 * 120.00032 * 170.53983 * 19 17 16 22 22 H 1.48506 * 109.47440 * 60.00301 * 21 19 17 23 23 H 1.48504 * 109.46720 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47419 * 300.00018 * 21 19 17 25 25 C 1.48336 * 103.60482 * 318.12719 * 16 15 13 26 26 C 1.54453 * 104.32303 * 41.80606 * 25 16 15 27 27 C 1.52998 * 112.29692 * 96.99012 * 26 25 16 28 28 C 1.49031 * 126.45327 * 180.18346 * 11 9 8 29 29 C 1.38218 * 120.00066 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47028 * 270.02306 * 1 2 3 31 31 H 1.09008 * 109.46829 * 30.02427 * 1 2 3 32 32 H 1.08997 * 109.47180 * 150.02122 * 1 2 3 33 33 H 1.08001 * 119.99623 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.99495 * 180.02562 * 4 3 2 35 35 H 1.09004 * 109.47261 * 270.24304 * 6 5 4 36 36 H 1.09003 * 109.47210 * 30.23470 * 6 5 4 37 37 H 1.08995 * 109.47565 * 150.23629 * 6 5 4 38 38 H 1.09003 * 109.46723 * 324.72495 * 8 7 5 39 39 H 1.09004 * 109.47152 * 204.72570 * 8 7 5 40 40 H 1.09007 * 110.06395 * 92.09828 * 12 11 9 41 41 H 1.08999 * 110.06869 * 330.58367 * 12 11 9 42 42 H 1.08994 * 110.46155 * 18.64928 * 15 13 12 43 43 H 1.09001 * 110.45959 * 256.19621 * 15 13 12 44 44 H 0.97000 * 119.99493 * 180.02562 * 20 19 17 45 45 H 1.08994 * 110.46687 * 160.52056 * 25 16 15 46 46 H 1.09007 * 110.45882 * 282.97233 * 25 16 15 47 47 H 1.09002 * 109.47600 * 61.01000 * 27 26 25 48 48 H 1.09001 * 109.47118 * 181.01528 * 27 26 25 49 49 H 1.09003 * 109.47065 * 301.01113 * 27 26 25 50 50 H 1.08998 * 110.61200 * 29.81217 * 28 11 9 51 51 H 1.09002 * 110.14532 * 267.88011 * 28 11 9 52 52 H 1.07995 * 119.99818 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0065 6 6 5.7787 0.0000 0.0134 7 6 3.5806 -1.1969 0.0012 8 6 4.3342 -2.5021 0.0023 9 6 4.6919 -2.8743 1.4181 10 8 4.3667 -2.1513 2.3358 11 7 5.3725 -4.0112 1.6644 12 6 5.8377 -4.9912 0.6696 13 6 5.8098 -6.3626 1.3640 14 1 4.9650 -6.9761 1.0507 15 6 7.1640 -7.0697 1.1361 16 7 7.4961 -7.6658 2.4531 17 6 8.0191 -8.9041 2.7145 18 1 8.0028 -9.6691 1.9522 19 6 8.5703 -9.1762 3.9592 20 7 8.7608 -8.2006 4.8219 21 14 9.0416 -10.9267 4.4094 22 1 10.0578 -11.4283 3.4497 23 1 9.6039 -10.9499 5.7837 24 1 7.8372 -11.7936 4.3533 25 6 7.1271 -6.6032 3.4201 26 6 5.7861 -6.0515 2.8881 27 6 4.5806 -6.6774 3.5922 28 6 5.7955 -4.5182 3.0005 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0010 35 1 6.1467 0.0019 -1.0126 36 1 6.1397 0.8891 0.5304 37 1 6.1397 -0.8909 0.5273 38 1 5.2451 -2.3961 -0.5869 39 1 3.7094 -3.2827 -0.4318 40 1 6.8537 -4.7517 0.3554 41 1 5.1704 -4.9949 -0.1923 42 1 7.9258 -6.3481 0.8414 43 1 7.0648 -7.8482 0.3796 44 1 9.1463 -8.3906 5.6915 45 1 6.9974 -7.0237 4.4172 46 1 7.8852 -5.8201 3.4333 47 1 4.6235 -6.4502 4.6574 48 1 3.6617 -6.2702 3.1705 49 1 4.5977 -7.7581 3.4503 50 1 5.0966 -4.1955 3.7722 51 1 6.8003 -4.1665 3.2346 52 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091971845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:48 Heat of formation + Delta-G solvation = 9.571239 kcal Electronic energy + Delta-G solvation = -30285.685090 eV Core-core repulsion = 26443.135313 eV Total energy + Delta-G solvation = -3842.549777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.44702 -39.60402 -38.12210 -34.91997 -34.31652 -32.72856 -32.27154 -31.35612 -29.56773 -29.42863 -28.31202 -26.35371 -25.44296 -25.10564 -24.83503 -22.63322 -22.11495 -20.63289 -20.41951 -18.96070 -18.29931 -17.05971 -16.55541 -16.27652 -15.97191 -15.45328 -15.21481 -14.83439 -14.69627 -14.25365 -14.06054 -13.86524 -13.58709 -13.41713 -13.27451 -13.17191 -12.86919 -12.86248 -12.72311 -12.36706 -12.19613 -12.10023 -12.02416 -11.70830 -11.60638 -11.52202 -11.37302 -11.07011 -11.03608 -10.89594 -10.79563 -10.77004 -10.20531 -10.03880 -9.99712 -9.87693 -9.67338 -9.56509 -8.84386 -8.70764 -8.46383 -8.44913 -6.89659 -5.82225 -3.17121 1.22898 1.30896 2.77392 3.12103 3.36351 3.41465 3.42355 3.66591 4.43169 4.50301 4.61711 4.68134 4.75329 4.86729 4.88490 5.03919 5.06572 5.11389 5.22550 5.27916 5.35688 5.40809 5.41680 5.43637 5.50386 5.54812 5.59433 5.61876 5.63613 5.66097 5.72820 5.80164 5.93051 5.99963 6.04104 6.11348 6.11488 6.22684 6.26822 6.32170 6.34152 6.47022 6.48127 6.56288 6.63680 6.69510 6.75424 6.92107 6.93675 7.25235 7.49818 7.68521 7.75744 8.17276 8.32030 9.06718 9.70354 10.48345 11.31461 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.002243 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.423144 B =12480.974650 C =12726.477772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.100 4.100 9 C 0.529 3.471 10 O -0.538 6.538 11 N -0.618 5.618 12 C 0.107 3.893 13 C -0.109 4.109 14 H 0.084 0.916 15 C 0.131 3.869 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.167 3.833 26 C -0.095 4.095 27 C -0.117 4.117 28 C 0.120 3.880 29 C -0.103 4.103 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.048 0.952 44 H 0.255 0.745 45 H 0.091 0.909 46 H 0.024 0.976 47 H 0.052 0.948 48 H 0.040 0.960 49 H 0.062 0.938 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.214 15.281 -12.252 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.173 4.173 7 C -0.059 4.059 8 C -0.140 4.140 9 C 0.318 3.682 10 O -0.415 6.415 11 N -0.352 5.352 12 C -0.016 4.016 13 C -0.130 4.130 14 H 0.103 0.897 15 C 0.004 3.996 16 N -0.316 5.316 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.041 3.959 26 C -0.098 4.098 27 C -0.174 4.174 28 C -0.002 4.002 29 C -0.121 4.121 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.273 15.585 -11.581 22.971 hybrid contribution 0.361 -0.921 0.265 1.024 sum -11.912 14.664 -11.316 22.022 Atomic orbital electron populations 1.20763 0.91336 1.02486 1.02287 1.19821 0.95918 0.93094 1.00595 1.20956 0.94138 0.97327 1.01294 1.20940 0.94139 0.97272 1.01178 1.19680 0.95915 0.92553 0.99139 1.20819 0.91398 1.03164 1.01911 1.19137 0.93315 0.93195 1.00293 1.20679 1.01902 0.96126 0.95298 1.20053 0.77494 0.79828 0.90854 1.90714 1.53923 1.50490 1.46405 1.49156 1.55135 1.21398 1.09527 1.22250 0.99537 0.88400 0.91398 1.23134 1.00572 0.94333 0.94925 0.89731 1.21853 0.91876 0.95378 0.90471 1.45034 1.73347 1.13609 0.99570 1.18916 1.31626 0.86371 0.98575 0.90695 1.24888 0.99716 0.97726 0.97836 1.69872 1.48338 1.29845 1.07936 0.86223 0.78253 0.83962 0.77444 1.21022 1.21574 1.21099 1.21775 0.87980 0.89991 0.96198 1.22594 0.99663 0.92474 0.95056 1.21548 0.95316 1.01063 0.99489 1.22546 1.00016 0.93416 0.84233 1.20831 0.93242 0.97601 1.00457 0.91270 0.91739 0.91670 0.86341 0.86196 0.91193 0.91469 0.91545 0.88016 0.88247 0.91026 0.91251 0.95560 0.93322 0.93494 0.89094 0.95825 0.92853 0.94064 0.91879 0.90713 0.91044 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.07 -0.86 5.88 -104.63 -0.62 -1.47 16 6 C -0.12 -1.19 9.22 36.00 0.33 -0.86 16 7 C -0.06 -0.72 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.12 4.13 -29.04 -0.12 -1.24 16 9 C 0.53 7.92 7.08 -10.99 -0.08 7.84 16 10 O -0.54 -10.08 16.30 5.56 0.09 -9.99 16 11 N -0.62 -9.19 3.36 -170.14 -0.57 -9.76 16 12 C 0.11 1.40 6.39 -3.27 -0.02 1.38 16 13 C -0.11 -1.73 3.75 -88.10 -0.33 -2.06 16 14 H 0.08 1.29 7.93 -51.93 -0.41 0.87 16 15 C 0.13 2.48 6.75 -2.27 -0.02 2.47 16 16 N -0.59 -14.25 3.37 -168.47 -0.57 -14.82 16 17 C -0.23 -6.04 10.37 -15.06 -0.16 -6.19 16 18 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 19 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 20 N -0.91 -26.03 10.89 55.49 0.60 -25.42 16 21 Si 0.91 21.42 29.56 -169.99 -5.03 16.39 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 C 0.17 3.76 5.10 -2.27 -0.01 3.75 16 26 C -0.10 -1.69 1.07 -151.99 -0.16 -1.85 16 27 C -0.12 -1.99 8.58 37.16 0.32 -1.67 16 28 C 0.12 2.01 6.32 -2.25 -0.01 1.99 16 29 C -0.10 -1.20 9.34 -39.58 -0.37 -1.57 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.41 8.09 -51.92 -0.42 -0.01 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 38 H 0.10 0.96 7.01 -51.93 -0.36 0.59 16 39 H 0.10 0.92 7.77 -51.93 -0.40 0.52 16 40 H 0.07 0.91 7.10 -51.93 -0.37 0.54 16 41 H 0.07 0.71 7.31 -51.93 -0.38 0.33 16 42 H 0.03 0.50 7.17 -51.93 -0.37 0.12 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.09 2.33 6.24 -51.93 -0.32 2.01 16 46 H 0.02 0.57 7.18 -51.92 -0.37 0.20 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.07 1.29 7.66 -51.93 -0.40 0.90 16 51 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -31.77 405.92 -10.87 -42.64 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.69 Total: 1.09 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.82 Total: -6.25 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.54 Total: -50.00 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.77 -10.87 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091971845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.212 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds