Wall clock time and date at job start Wed Apr 1 2020 02:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38237 * 120.00356 * 2 1 4 4 C 1.38231 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99656 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00208 * 359.97438 * 4 3 2 7 7 C 1.38240 * 120.00046 * 0.02562 * 6 4 3 8 8 C 1.50696 * 119.99918 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46943 * 90.00442 * 8 7 6 10 10 O 1.21286 * 120.00161 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99996 * 179.97438 * 9 8 7 12 12 C 1.47191 * 126.70772 * 0.02679 * 11 9 8 13 13 C 1.53740 * 106.43110 * 211.35322 * 12 11 9 14 14 H 1.09003 * 112.28700 * 103.78626 * 13 12 11 15 15 C 1.54816 * 108.88279 * 229.54690 * 13 12 11 16 16 N 1.48335 * 104.14555 * 137.53389 * 15 13 12 17 17 C 1.36940 * 128.20157 * 138.19627 * 16 15 13 18 18 H 1.07997 * 120.00359 * 200.02152 * 17 16 15 19 19 C 1.38812 * 119.99758 * 20.01478 * 17 16 15 20 20 N 1.31616 * 119.99804 * 20.86021 * 19 17 16 21 21 Si 1.86793 * 120.00209 * 200.85264 * 19 17 16 22 22 H 1.48499 * 109.47313 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47304 * 60.00515 * 21 19 17 24 24 H 1.48506 * 109.47306 * 300.00888 * 21 19 17 25 25 C 1.48327 * 103.60193 * 317.94009 * 16 15 13 26 26 C 1.54449 * 104.32707 * 42.02934 * 25 16 15 27 27 C 1.53004 * 112.29966 * 96.98790 * 26 25 16 28 28 C 1.47196 * 126.70192 * 179.97438 * 11 9 8 29 29 C 1.38232 * 119.99799 * 0.26110 * 7 6 4 30 30 H 1.09006 * 109.46829 * 90.00208 * 1 2 3 31 31 H 1.08999 * 109.47367 * 209.99476 * 1 2 3 32 32 H 1.08995 * 109.47108 * 329.99657 * 1 2 3 33 33 H 1.08004 * 119.99326 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.47450 * 269.97875 * 5 4 3 35 35 H 1.09005 * 109.47502 * 29.98279 * 5 4 3 36 36 H 1.09001 * 109.47229 * 149.98123 * 5 4 3 37 37 H 1.08005 * 119.99991 * 179.97438 * 6 4 3 38 38 H 1.09004 * 109.47605 * 330.00681 * 8 7 6 39 39 H 1.08997 * 109.47339 * 209.99954 * 8 7 6 40 40 H 1.08994 * 110.06798 * 92.10701 * 12 11 9 41 41 H 1.09004 * 110.10522 * 330.61452 * 12 11 9 42 42 H 1.09003 * 110.57399 * 18.87310 * 15 13 12 43 43 H 1.09001 * 110.52565 * 256.17432 * 15 13 12 44 44 H 0.97004 * 120.00601 * 5.83644 * 20 19 17 45 45 H 1.09004 * 110.46761 * 160.74419 * 25 16 15 46 46 H 1.09001 * 110.46320 * 283.32291 * 25 16 15 47 47 H 1.08994 * 109.47132 * 61.01398 * 27 26 25 48 48 H 1.08998 * 109.46804 * 181.01986 * 27 26 25 49 49 H 1.09002 * 109.46922 * 301.01128 * 27 26 25 50 50 H 1.08995 * 110.06859 * 29.41061 * 28 11 9 51 51 H 1.09000 * 110.06889 * 267.88978 * 28 11 9 52 52 H 1.08002 * 119.99945 * 179.72244 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1972 0.0016 8 6 4.3340 -2.5023 0.0022 9 6 4.5845 -2.9370 1.4233 10 8 4.1904 -2.2541 2.3448 11 7 5.2465 -4.0848 1.6701 12 6 5.7872 -5.0208 0.6711 13 6 5.7090 -6.4214 1.3004 14 1 4.8864 -7.0110 0.8957 15 6 7.0828 -7.1180 1.1448 16 7 7.3083 -7.7719 2.4570 17 6 7.8132 -9.0203 2.7055 18 1 7.6314 -9.4968 3.6575 19 6 8.5586 -9.6735 1.7336 20 7 9.1279 -8.9846 0.7674 21 14 8.7540 -11.5301 1.7972 22 1 9.5899 -11.9794 0.6550 23 1 7.4171 -12.1716 1.7152 24 1 9.4105 -11.9155 3.0723 25 6 6.8635 -6.7508 3.4366 26 6 5.5665 -6.1754 2.8266 27 6 4.3115 -6.8292 3.4084 28 6 5.5709 -4.6465 2.9914 29 6 2.1982 -1.1972 -0.0049 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.6582 2.1324 0.0004 34 1 4.5164 2.8160 -1.0279 35 1 3.7446 3.2623 0.5128 36 1 5.2861 2.3723 0.5145 37 1 5.3517 0.0000 0.0016 38 1 5.2867 -2.3721 -0.5112 39 1 3.7452 -3.2621 -0.5117 40 1 6.8235 -4.7696 0.4456 41 1 5.1877 -4.9856 -0.2385 42 1 7.8639 -6.3844 0.9454 43 1 7.0459 -7.8625 0.3495 44 1 9.0985 -8.0151 0.7805 45 1 6.6581 -7.2129 4.4022 46 1 7.6156 -5.9686 3.5398 47 1 4.2716 -6.6472 4.4823 48 1 3.4271 -6.4033 2.9345 49 1 4.3417 -7.9028 3.2226 50 1 4.8180 -4.3469 3.7203 51 1 6.5565 -4.3075 3.3102 52 1 1.6582 -2.1325 -0.0095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091975926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:52 Heat of formation + Delta-G solvation = 4.496613 kcal Electronic energy + Delta-G solvation = -29955.143883 eV Core-core repulsion = 26112.374053 eV Total energy + Delta-G solvation = -3842.769830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.52310 -39.70709 -38.30105 -35.20452 -33.68602 -33.68513 -32.89742 -30.97463 -29.92080 -28.83265 -27.37892 -26.85739 -26.32742 -25.49336 -25.06378 -22.60950 -21.17657 -20.90285 -20.53169 -19.11445 -18.51213 -17.41067 -16.91618 -16.46386 -16.19176 -15.54016 -15.34668 -14.72447 -14.33382 -14.27508 -14.08160 -14.00890 -13.74872 -13.50605 -13.43625 -13.13756 -13.11354 -12.94985 -12.77321 -12.75262 -12.45651 -12.29926 -12.05734 -11.91063 -11.66989 -11.61297 -11.31169 -11.17726 -11.13097 -10.91913 -10.74078 -10.56047 -10.32120 -10.17082 -10.14208 -10.00004 -9.76545 -9.41451 -8.72438 -8.66012 -8.61633 -8.51977 -7.04594 -6.15250 -3.24047 1.20752 1.26138 2.68609 3.05387 3.46210 3.48880 3.62987 3.67041 4.45455 4.50920 4.56769 4.57326 4.61293 4.75042 4.96263 4.98185 5.04242 5.10874 5.13652 5.15714 5.32371 5.33924 5.36109 5.38129 5.38903 5.40975 5.42509 5.48581 5.51230 5.60145 5.64095 5.64900 5.84460 5.88803 5.91791 5.98672 6.03221 6.04435 6.16398 6.21010 6.32078 6.40048 6.40484 6.43042 6.50316 6.54553 6.59538 6.74526 6.86291 6.90208 6.93944 7.65285 7.66313 8.23104 8.38261 8.91845 9.72981 10.35478 11.20306 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.002162 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.222308 B =12948.231241 C =13222.193826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.099 4.099 9 C 0.531 3.469 10 O -0.539 6.539 11 N -0.615 5.615 12 C 0.104 3.896 13 C -0.111 4.111 14 H 0.086 0.914 15 C 0.143 3.857 16 N -0.598 5.598 17 C -0.323 4.323 18 H 0.066 0.934 19 C -0.029 4.029 20 N -0.925 5.925 21 Si 1.071 2.929 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.136 3.864 26 C -0.085 4.085 27 C -0.119 4.119 28 C 0.118 3.882 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.028 0.972 43 H 0.069 0.931 44 H 0.268 0.732 45 H 0.052 0.948 46 H 0.026 0.974 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.609 17.999 -4.037 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.139 4.139 9 C 0.320 3.680 10 O -0.416 6.416 11 N -0.349 5.349 12 C -0.019 4.019 13 C -0.132 4.132 14 H 0.104 0.896 15 C 0.016 3.984 16 N -0.322 5.322 17 C -0.451 4.451 18 H 0.083 0.917 19 C -0.229 4.229 20 N -0.566 5.566 21 Si 0.900 3.100 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.010 3.990 26 C -0.088 4.088 27 C -0.176 4.176 28 C -0.005 4.005 29 C -0.128 4.128 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.156 16.973 -4.318 21.904 hybrid contribution -0.477 1.249 0.861 1.590 sum -13.634 18.221 -3.457 23.018 Atomic orbital electron populations 1.20774 0.91262 1.02776 1.02145 1.19827 0.95931 0.93017 0.99578 1.20850 0.93482 0.97382 1.02424 1.19824 0.93810 0.95144 0.99562 1.20777 0.99979 0.94058 1.02155 1.20825 0.99510 0.91434 1.01054 1.19247 0.93498 0.93527 0.99175 1.20661 1.02253 0.96032 0.94956 1.20104 0.77281 0.79534 0.91113 1.90714 1.51253 1.53229 1.46441 1.48656 1.55620 1.21688 1.08892 1.22330 0.99086 0.88890 0.91578 1.23188 1.01330 0.94295 0.94354 0.89552 1.21908 0.90385 0.95160 0.90939 1.45155 1.74357 1.12923 0.99744 1.19772 1.30401 0.90645 1.04290 0.91665 1.25854 0.94477 1.06638 0.95974 1.70784 1.41149 1.08811 1.35887 0.83427 0.76051 0.74725 0.75760 1.21001 1.22041 1.21991 1.21874 0.91470 0.91878 0.93807 1.22351 0.97818 0.92704 0.95914 1.21569 0.95234 1.01104 0.99739 1.22156 1.00754 0.92581 0.85006 1.20821 0.93331 0.97584 1.01111 0.91269 0.91541 0.91645 0.86358 0.91261 0.91647 0.91529 0.86342 0.87955 0.87991 0.90853 0.90950 0.95422 0.91213 0.92081 0.92970 0.95658 0.92943 0.93465 0.91655 0.90714 0.91390 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 4 C -0.08 -0.89 5.88 -104.63 -0.62 -1.50 16 5 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 6 C -0.11 -1.28 9.36 -39.58 -0.37 -1.65 16 7 C -0.05 -0.65 4.37 -104.63 -0.46 -1.11 16 8 C -0.10 -1.11 4.81 -29.03 -0.14 -1.25 16 9 C 0.53 7.85 7.87 -10.98 -0.09 7.76 16 10 O -0.54 -9.90 16.26 5.55 0.09 -9.81 16 11 N -0.62 -9.00 3.32 -171.64 -0.57 -9.57 16 12 C 0.10 1.43 6.38 -3.28 -0.02 1.41 16 13 C -0.11 -1.85 3.76 -88.09 -0.33 -2.18 16 14 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 15 C 0.14 3.04 4.62 -2.07 -0.01 3.03 16 16 N -0.60 -14.44 3.24 -168.25 -0.55 -14.98 16 17 C -0.32 -8.81 10.26 -15.06 -0.15 -8.97 16 18 H 0.07 1.77 7.91 -52.49 -0.42 1.36 16 19 C -0.03 -0.79 5.20 -17.43 -0.09 -0.88 16 20 N -0.92 -27.11 12.70 55.49 0.70 -26.41 16 21 Si 1.07 24.75 29.97 -169.99 -5.09 19.65 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.14 2.72 6.37 -2.28 -0.01 2.71 16 26 C -0.09 -1.41 1.08 -152.16 -0.16 -1.58 16 27 C -0.12 -1.82 8.61 37.16 0.32 -1.50 16 28 C 0.12 1.84 6.22 -3.26 -0.02 1.82 16 29 C -0.11 -1.28 9.36 -39.58 -0.37 -1.65 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.10 0.95 7.80 -51.93 -0.41 0.54 16 40 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 41 H 0.07 0.81 7.31 -51.93 -0.38 0.43 16 42 H 0.03 0.60 6.80 -51.93 -0.35 0.25 16 43 H 0.07 1.67 7.16 -51.93 -0.37 1.29 16 44 H 0.27 7.79 6.11 -40.82 -0.25 7.54 16 45 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 46 H 0.03 0.51 7.17 -51.93 -0.37 0.14 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.07 1.18 7.63 -51.93 -0.40 0.79 16 51 H 0.07 1.08 7.10 -51.93 -0.37 0.71 16 52 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -32.77 409.49 -10.81 -43.59 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.78 Total: 1.08 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.79 Total: -9.72 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.41 Total: -50.96 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.77 -10.81 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091975926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.084 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds