Wall clock time and date at job start Wed Apr 1 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38259 * 119.99732 * 2 1 4 4 C 1.38215 * 119.99727 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00235 * 359.74951 * 4 3 2 6 6 C 1.38220 * 119.99801 * 0.50738 * 5 4 3 7 7 C 1.50696 * 120.00173 * 179.76248 * 6 5 4 8 8 H 1.08996 * 109.47369 * 179.72624 * 7 6 5 9 9 C 1.53002 * 109.46918 * 59.72325 * 7 6 5 10 10 C 1.50706 * 109.46969 * 299.72990 * 7 6 5 11 11 O 1.21273 * 120.00189 * 31.35787 * 10 7 6 12 12 N 1.34775 * 119.99604 * 211.35073 * 10 7 6 13 13 C 1.47191 * 126.70077 * 184.85358 * 12 10 7 14 14 C 1.53742 * 106.43139 * 211.40455 * 13 12 10 15 15 H 1.09008 * 112.28549 * 103.79161 * 14 13 12 16 16 C 1.54868 * 108.86655 * 229.57095 * 14 13 12 17 17 N 1.48331 * 104.11957 * 137.56257 * 16 14 13 18 18 C 1.36940 * 128.20262 * 138.15652 * 17 16 14 19 19 H 1.08000 * 120.00002 * 195.60103 * 18 17 16 20 20 C 1.38804 * 119.99662 * 15.60380 * 18 17 16 21 21 N 1.31624 * 120.00159 * 198.35603 * 20 18 17 22 22 Si 1.86802 * 120.00196 * 18.35526 * 20 18 17 23 23 H 1.48502 * 109.47221 * 265.59423 * 22 20 18 24 24 H 1.48504 * 109.47007 * 145.59582 * 22 20 18 25 25 H 1.48502 * 109.47315 * 25.59297 * 22 20 18 26 26 C 1.48337 * 103.60127 * 317.89963 * 17 16 14 27 27 C 1.54449 * 104.32265 * 42.06606 * 26 17 16 28 28 C 1.53000 * 112.30017 * 97.55453 * 27 26 17 29 29 C 1.47199 * 126.70728 * 4.89859 * 12 10 7 30 30 C 1.38209 * 120.00002 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46527 * 270.01654 * 1 2 3 32 32 H 1.09004 * 109.47009 * 30.01962 * 1 2 3 33 33 H 1.08995 * 109.46888 * 150.01816 * 1 2 3 34 34 H 1.08004 * 120.00333 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.99766 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.00231 * 180.27356 * 5 4 3 37 37 H 1.08998 * 109.47642 * 300.70463 * 9 7 6 38 38 H 1.09008 * 109.46630 * 60.70310 * 9 7 6 39 39 H 1.09000 * 109.47187 * 180.69714 * 9 7 6 40 40 H 1.08996 * 110.07232 * 330.65168 * 13 12 10 41 41 H 1.09003 * 110.06554 * 92.11339 * 13 12 10 42 42 H 1.09002 * 110.59307 * 18.90885 * 16 14 13 43 43 H 1.09003 * 110.54019 * 256.18960 * 16 14 13 44 44 H 0.97003 * 119.99189 * 4.93269 * 21 20 18 45 45 H 1.08996 * 110.46187 * 160.77578 * 26 17 16 46 46 H 1.08999 * 110.46066 * 283.35485 * 26 17 16 47 47 H 1.08999 * 109.47358 * 61.01628 * 28 27 26 48 48 H 1.09005 * 109.47346 * 181.01686 * 28 27 26 49 49 H 1.09003 * 109.47324 * 301.01087 * 28 27 26 50 50 H 1.09002 * 110.05924 * 29.34996 * 29 12 10 51 51 H 1.09001 * 110.06569 * 267.83770 * 29 12 10 52 52 H 1.07993 * 120.00323 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0063 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0018 8 1 3.6259 -3.3305 0.0020 9 6 5.2134 -2.5823 1.2514 10 6 5.2011 -2.5823 -1.2283 11 8 5.6664 -1.5710 -1.7094 12 7 5.4592 -3.7782 -1.7938 13 6 6.3597 -4.0386 -2.9287 14 6 5.7680 -5.2380 -3.6869 15 1 5.2643 -4.9384 -4.6060 16 6 6.8873 -6.2814 -3.9254 17 7 6.2372 -7.5825 -3.6342 18 6 6.3541 -8.7604 -4.3226 19 1 5.6420 -9.5555 -4.1573 20 6 7.3876 -8.9326 -5.2330 21 7 7.3112 -9.8794 -6.1442 22 14 8.8871 -7.8207 -5.1650 23 1 8.7051 -6.6861 -6.1057 24 1 10.0948 -8.5942 -5.5503 25 1 9.0535 -7.2977 -3.7851 26 6 5.4356 -7.3072 -2.4168 27 6 4.8046 -5.9222 -2.6799 28 6 3.3715 -6.0275 -3.2051 29 6 4.8952 -5.0788 -1.3977 30 6 2.1981 -1.1969 0.0005 31 1 -0.3632 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3518 0.0001 0.0112 37 1 5.9134 -1.7468 1.2576 38 1 4.5853 -2.5367 2.1411 39 1 5.7678 -3.5208 1.2458 40 1 6.4005 -3.1667 -3.5815 41 1 7.3586 -4.2806 -2.5656 42 1 7.7213 -6.1113 -3.2445 43 1 7.2267 -6.2483 -4.9607 44 1 6.5031 -10.4097 -6.2258 45 1 4.6594 -8.0622 -2.2929 46 1 6.0784 -7.2722 -1.5372 47 1 2.7492 -6.5304 -2.4649 48 1 2.9784 -5.0280 -3.3915 49 1 3.3657 -6.5990 -4.1333 50 1 3.9022 -4.9410 -0.9698 51 1 5.5499 -5.5660 -0.6751 52 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092055319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:00 Heat of formation + Delta-G solvation = 16.136492 kcal Electronic energy + Delta-G solvation = -30649.089106 eV Core-core repulsion = 26806.824020 eV Total energy + Delta-G solvation = -3842.265087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.77112 -39.71676 -38.38895 -35.25957 -34.60779 -32.80779 -32.43220 -31.43449 -30.46706 -29.69754 -27.03890 -26.77746 -25.97003 -25.70561 -24.39791 -22.46425 -22.10246 -20.99010 -20.82939 -18.84813 -18.78505 -17.36253 -17.20964 -16.65382 -15.92493 -15.59561 -15.47519 -15.04953 -14.75265 -14.45128 -14.21567 -13.99291 -13.78449 -13.69785 -13.42415 -13.24051 -13.13593 -12.97130 -12.69341 -12.52281 -12.46389 -12.38012 -12.16800 -11.98708 -11.92239 -11.67439 -11.42216 -11.20852 -11.15185 -11.03523 -10.92922 -10.67597 -10.52049 -10.34423 -10.01814 -9.68312 -9.49275 -9.19174 -8.93401 -8.79322 -8.71442 -8.60646 -7.15459 -6.37512 -3.29030 1.16553 1.26711 2.60795 2.97254 3.39330 3.49683 3.63374 3.63807 4.33985 4.36117 4.56662 4.57849 4.62833 4.71144 4.81072 4.86657 4.90859 5.02592 5.03066 5.13020 5.18532 5.26908 5.30723 5.33629 5.37984 5.39311 5.44242 5.51987 5.53054 5.57026 5.57558 5.60563 5.72952 5.83562 5.86835 5.88776 5.93595 5.98828 6.05928 6.12750 6.21210 6.32124 6.34809 6.38264 6.40756 6.41748 6.49063 6.59080 6.63857 6.70042 6.86662 7.53275 7.57980 8.15548 8.25903 8.95386 9.48379 10.22723 11.12315 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.002608 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.580834 B =10733.791122 C =11248.972870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.072 4.072 7 C -0.067 4.067 8 H 0.097 0.903 9 C -0.135 4.135 10 C 0.537 3.463 11 O -0.538 6.538 12 N -0.613 5.613 13 C 0.110 3.890 14 C -0.107 4.107 15 H 0.089 0.911 16 C 0.112 3.888 17 N -0.604 5.604 18 C -0.316 4.316 19 H 0.078 0.922 20 C -0.018 4.018 21 N -0.924 5.924 22 Si 1.055 2.945 23 H -0.295 1.295 24 H -0.300 1.300 25 H -0.281 1.281 26 C 0.138 3.862 27 C -0.086 4.086 28 C -0.121 4.121 29 C 0.109 3.891 30 C -0.112 4.112 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.263 0.737 45 H 0.055 0.945 46 H 0.031 0.969 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 18.720 16.129 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.072 4.072 7 C -0.089 4.089 8 H 0.115 0.885 9 C -0.193 4.193 10 C 0.325 3.675 11 O -0.415 6.415 12 N -0.345 5.345 13 C -0.013 4.013 14 C -0.128 4.128 15 H 0.108 0.892 16 C -0.014 4.014 17 N -0.328 5.328 18 C -0.443 4.443 19 H 0.095 0.905 20 C -0.218 4.218 21 N -0.564 5.564 22 Si 0.887 3.113 23 H -0.224 1.224 24 H -0.228 1.228 25 H -0.207 1.207 26 C 0.011 3.989 27 C -0.089 4.089 28 C -0.178 4.178 29 C -0.014 4.014 30 C -0.130 4.130 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.498 19.432 15.169 26.418 hybrid contribution -1.488 -0.351 0.555 1.626 sum -10.986 19.081 15.724 27.056 Atomic orbital electron populations 1.20770 0.91259 1.02739 1.02158 1.19829 0.95947 0.93066 1.00560 1.21023 0.94316 0.97358 1.01160 1.21133 0.94206 0.98058 1.00576 1.21069 1.00436 0.91493 0.97327 1.19374 0.93145 0.93718 1.00990 1.20226 0.97401 0.96900 0.94334 0.88495 1.21713 0.99388 1.02938 0.95259 1.20050 0.81090 0.81755 0.84594 1.90682 1.53108 1.33909 1.63849 1.48623 1.45576 1.06617 1.33719 1.22196 0.93105 0.98342 0.87646 1.23148 0.97500 0.94239 0.97926 0.89230 1.22430 0.93522 0.85711 0.99714 1.45464 1.53825 1.06269 1.27254 1.20097 1.12351 0.91884 1.19975 0.90459 1.25943 1.00969 1.00449 0.94436 1.70878 1.30811 1.23090 1.31655 0.83981 0.77019 0.74636 0.75705 1.22360 1.22788 1.20711 1.21873 0.94241 0.92570 0.90201 1.22344 0.96128 0.96998 0.93390 1.21592 0.93643 1.00977 1.01636 1.22353 0.98631 0.83063 0.97370 1.20892 0.93179 0.97692 1.01241 0.91314 0.91661 0.91585 0.86358 0.86150 0.85510 0.91650 0.91148 0.91618 0.90475 0.91110 0.94003 0.91783 0.92706 0.92602 0.95141 0.92785 0.93322 0.91522 0.90843 0.90843 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.09 -1.00 7.95 -39.58 -0.31 -1.32 16 6 C -0.07 -0.81 4.69 -104.62 -0.49 -1.30 16 7 C -0.07 -0.71 2.59 -92.92 -0.24 -0.96 16 8 H 0.10 0.87 6.14 -51.93 -0.32 0.56 16 9 C -0.14 -1.20 9.00 37.16 0.33 -0.87 16 10 C 0.54 7.50 6.90 -10.98 -0.08 7.42 16 11 O -0.54 -9.20 14.80 5.56 0.08 -9.12 16 12 N -0.61 -8.44 3.32 -171.66 -0.57 -9.01 16 13 C 0.11 1.66 6.56 -3.28 -0.02 1.64 16 14 C -0.11 -1.78 3.77 -88.06 -0.33 -2.12 16 15 H 0.09 1.51 7.95 -51.92 -0.41 1.09 16 16 C 0.11 2.30 4.23 -2.05 -0.01 2.29 16 17 N -0.60 -13.91 3.22 -168.22 -0.54 -14.45 16 18 C -0.32 -8.68 10.66 -15.06 -0.16 -8.84 16 19 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 20 C -0.02 -0.52 5.49 -17.43 -0.10 -0.61 16 21 N -0.92 -28.46 13.70 55.49 0.76 -27.69 16 22 Si 1.05 25.94 24.93 -169.99 -4.24 21.71 16 23 H -0.30 -6.96 6.76 56.52 0.38 -6.58 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.28 -6.41 5.73 56.52 0.32 -6.09 16 26 C 0.14 2.50 6.38 -2.27 -0.01 2.49 16 27 C -0.09 -1.29 1.08 -152.17 -0.16 -1.45 16 28 C -0.12 -1.67 8.61 37.16 0.32 -1.35 16 29 C 0.11 1.33 5.99 -3.27 -0.02 1.31 16 30 C -0.11 -1.14 9.33 -39.58 -0.37 -1.51 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.56 6.74 -52.49 -0.35 1.20 16 37 H 0.06 0.62 7.35 -51.93 -0.38 0.23 16 38 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 41 H 0.07 1.06 7.10 -51.93 -0.37 0.70 16 42 H 0.04 0.85 5.85 -51.93 -0.30 0.54 16 43 H 0.06 1.42 4.85 -51.93 -0.25 1.17 16 44 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 45 H 0.06 1.01 7.91 -51.93 -0.41 0.59 16 46 H 0.03 0.53 7.17 -51.93 -0.37 0.16 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 51 H 0.07 0.86 7.10 -51.93 -0.37 0.49 16 52 H 0.12 1.02 7.95 -52.49 -0.42 0.60 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -32.62 396.65 -9.81 -42.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.59 Total: 0.46 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.69 Total: -10.30 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.35 Total: -51.16 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -4.24 Total: 21.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.62 -9.81 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092055319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.570 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds