Wall clock time and date at job start Wed Apr 1 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47123 * 2 1 4 4 C 1.38244 * 119.99811 * 90.00652 * 3 2 1 5 5 C 1.38228 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.95197 * 5 4 3 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.47207 * 126.70237 * 359.68797 * 10 8 7 12 12 C 1.54078 * 106.22313 * 148.66800 * 11 10 8 13 13 H 1.09005 * 112.45866 * 141.24893 * 12 11 10 14 14 C 1.53787 * 109.53300 * 266.28585 * 12 11 10 15 15 N 1.47211 * 106.37450 * 131.53249 * 14 12 11 16 16 C 1.36942 * 126.69719 * 148.72934 * 15 14 12 17 17 H 1.07998 * 119.99762 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00163 * 359.97438 * 16 15 14 19 19 N 1.31615 * 119.99890 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46986 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46910 * 119.99967 * 20 18 16 23 23 H 1.48497 * 109.46885 * 240.00164 * 20 18 16 24 24 C 1.47206 * 106.59972 * 328.72718 * 15 14 12 25 25 C 1.53785 * 106.37346 * 31.27376 * 24 15 14 26 26 C 1.53003 * 111.85753 * 104.04750 * 25 24 15 27 27 C 1.47218 * 126.69928 * 180.02562 * 10 8 7 28 28 C 1.38237 * 119.99938 * 0.27676 * 6 5 4 29 29 C 1.38232 * 120.00475 * 269.97881 * 3 2 1 30 30 H 1.09000 * 109.47037 * 59.99156 * 1 2 3 31 31 H 1.08997 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46548 * 299.99937 * 1 2 3 33 33 H 1.09008 * 109.46865 * 240.00623 * 2 1 3 34 34 H 1.08992 * 109.47191 * 120.00561 * 2 1 3 35 35 H 1.07996 * 119.99692 * 359.96894 * 4 3 2 36 36 H 1.07995 * 120.00359 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.46665 * 330.00035 * 7 6 5 38 38 H 1.09000 * 109.47722 * 210.00366 * 7 6 5 39 39 H 1.08999 * 110.07775 * 267.97837 * 11 10 8 40 40 H 1.09004 * 110.07810 * 29.51939 * 11 10 8 41 41 H 1.08999 * 110.06895 * 12.30381 * 14 12 11 42 42 H 1.09004 * 110.12202 * 250.79136 * 14 12 11 43 43 H 0.97003 * 119.99726 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.07877 * 272.04881 * 24 15 14 45 45 H 1.09000 * 110.12405 * 150.52346 * 24 15 14 46 46 H 1.09001 * 109.46913 * 182.04440 * 26 25 24 47 47 H 1.09006 * 109.46963 * 302.03746 * 26 25 24 48 48 H 1.08995 * 109.47694 * 62.04172 * 26 25 24 49 49 H 1.08996 * 110.07477 * 330.48116 * 27 10 8 50 50 H 1.09003 * 110.07024 * 91.96774 * 27 10 8 51 51 H 1.08000 * 119.99953 * 179.73050 * 28 6 5 52 52 H 1.08004 * 120.00066 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9539 4.0274 0.0002 7 6 3.4562 5.4482 0.0002 8 6 4.9633 5.4482 0.0007 9 8 5.5696 4.3979 0.0005 10 7 5.6371 6.6154 0.0013 11 6 5.0549 7.9675 -0.0049 12 6 6.0414 8.8645 0.7673 13 1 6.1419 9.8537 0.3206 14 6 5.6175 8.9432 2.2434 15 7 6.8290 8.6815 3.0377 16 6 7.1237 9.1928 4.2734 17 1 8.0501 8.9271 4.7608 18 6 6.2322 10.0534 4.8992 19 7 5.1034 10.3776 4.3050 20 14 6.6346 10.7513 6.5845 21 1 7.9539 10.2364 7.0314 22 1 6.6823 12.2336 6.5079 23 1 5.5877 10.3391 7.5537 24 6 7.6618 7.7629 2.2441 25 6 7.3823 8.0903 0.7678 26 6 8.5254 8.8863 0.1346 27 6 7.0992 6.7872 0.0013 28 6 2.7189 3.3775 -1.1970 29 6 2.2632 2.0723 -1.1971 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0825 1.5633 2.1325 36 1 2.9029 3.8850 2.1326 37 1 3.0926 5.9620 0.8901 38 1 3.0931 5.9621 -0.8899 39 1 4.9452 8.3230 -1.0294 40 1 4.0861 7.9600 0.4947 41 1 4.8604 8.1884 2.4560 42 1 5.2290 9.9363 2.4696 43 1 4.4803 10.9786 4.7424 44 1 7.3865 6.7299 2.4568 45 1 8.7161 7.9229 2.4697 46 1 8.2717 9.1278 -0.8976 47 1 8.6808 9.8078 0.6957 48 1 9.4378 8.2904 0.1546 49 1 7.5748 5.9458 0.5052 50 1 7.4666 6.8664 -1.0219 51 1 2.8950 3.8880 -2.1323 52 1 2.0832 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092057629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:57 Heat of formation + Delta-G solvation = 7.104546 kcal Electronic energy + Delta-G solvation = -30143.020486 eV Core-core repulsion = 26300.363744 eV Total energy + Delta-G solvation = -3842.656741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.38847 -39.50688 -38.10730 -34.97925 -34.66297 -32.89316 -31.38590 -30.91337 -30.80370 -30.00642 -27.77134 -26.22942 -25.47666 -25.09871 -23.34356 -22.74111 -22.40231 -20.69153 -20.26990 -19.17269 -18.54593 -16.96852 -16.62112 -16.21719 -16.02922 -15.41325 -15.32057 -14.84858 -14.71089 -14.19160 -13.92919 -13.85003 -13.73977 -13.52755 -13.41552 -13.26168 -13.00985 -12.66557 -12.58118 -12.20140 -12.07410 -11.96167 -11.78646 -11.71999 -11.58590 -11.39872 -11.30953 -11.00439 -10.95141 -10.90445 -10.86895 -10.78130 -10.14822 -10.10815 -9.98648 -9.79156 -9.63412 -9.49033 -8.87839 -8.75206 -8.50791 -8.37679 -6.90840 -5.68349 -3.12776 1.30946 1.44889 2.85375 3.21597 3.36682 3.42722 3.44777 3.80238 4.44384 4.58267 4.69119 4.71140 4.79616 4.91836 4.94354 5.00328 5.13908 5.15924 5.21041 5.29152 5.35413 5.44344 5.46868 5.50848 5.54303 5.59400 5.59803 5.65867 5.67359 5.75970 5.79026 5.90752 5.94123 5.99905 6.04429 6.06404 6.09070 6.17737 6.28634 6.37057 6.40577 6.44148 6.53819 6.59538 6.63116 6.64955 6.80006 6.93347 7.02133 7.40007 7.57738 7.77280 7.81712 8.35329 8.39632 9.17341 9.78003 10.45826 11.32915 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.002613 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.073363 B =10713.462596 C =12020.940040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.100 4.100 6 C -0.064 4.064 7 C -0.100 4.100 8 C 0.535 3.465 9 O -0.541 6.541 10 N -0.611 5.611 11 C 0.108 3.892 12 C -0.115 4.115 13 H 0.087 0.913 14 C 0.144 3.856 15 N -0.595 5.595 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.144 3.856 25 C -0.087 4.087 26 C -0.121 4.121 27 C 0.120 3.880 28 C -0.103 4.103 29 C -0.119 4.119 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.006 0.994 42 H 0.124 0.876 43 H 0.252 0.748 44 H 0.018 0.982 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -11.793 -13.328 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.134 4.134 5 C -0.118 4.118 6 C -0.064 4.064 7 C -0.139 4.139 8 C 0.323 3.677 9 O -0.418 6.418 10 N -0.345 5.345 11 C -0.015 4.015 12 C -0.136 4.136 13 H 0.105 0.895 14 C 0.018 3.982 15 N -0.318 5.318 16 C -0.344 4.344 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.017 3.983 25 C -0.089 4.089 26 C -0.179 4.179 27 C -0.003 4.003 28 C -0.121 4.121 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.024 0.976 42 H 0.141 0.859 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.402 -12.308 -13.114 19.090 hybrid contribution 0.214 0.448 0.876 1.007 sum -6.188 -11.860 -12.238 18.130 Atomic orbital electron populations 1.21747 0.94841 1.01501 1.02240 1.20526 0.96052 0.92868 1.02711 1.19847 0.99540 0.96070 0.93279 1.20954 1.00284 0.94759 0.97451 1.21027 0.98255 0.94847 0.97634 1.19288 0.98855 0.94729 0.93566 1.20662 0.92509 0.95419 1.05355 1.20069 0.89295 0.82183 0.76125 1.90699 1.70278 1.30515 1.50313 1.48466 1.07669 1.05764 1.72561 1.22256 0.98138 0.81497 0.99594 1.23135 0.92905 0.97149 1.00405 0.89460 1.21986 0.88440 1.04075 0.83700 1.44512 1.18391 1.51673 1.17264 1.19151 1.02868 1.20851 0.91521 0.90358 1.24762 0.96565 1.00391 0.99080 1.69595 1.10448 1.39630 1.37460 0.85976 0.77456 0.78577 0.83385 1.20546 1.21725 1.21759 1.21444 0.95235 0.93387 0.88220 1.22160 0.95817 0.93831 0.97116 1.21611 0.96636 1.00150 0.99514 1.22053 0.80685 0.98091 0.99443 1.20925 0.99084 0.94864 0.97253 1.20903 1.00699 0.94743 0.97341 0.92607 0.92568 0.92517 0.91209 0.91136 0.86245 0.86034 0.87678 0.88182 0.92082 0.90293 0.97608 0.85910 0.93722 0.96454 0.93937 0.93135 0.91650 0.92897 0.90531 0.92185 0.86394 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 37.16 0.37 -0.71 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -0.98 5.13 -104.62 -0.54 -1.52 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 5 C -0.10 -1.35 9.70 -39.59 -0.38 -1.73 16 6 C -0.06 -0.86 4.37 -104.62 -0.46 -1.32 16 7 C -0.10 -1.29 4.81 -29.03 -0.14 -1.43 16 8 C 0.53 8.81 7.87 -10.98 -0.09 8.73 16 9 O -0.54 -10.76 16.27 5.56 0.09 -10.67 16 10 N -0.61 -9.74 3.32 -171.38 -0.57 -10.31 16 11 C 0.11 1.57 6.19 -3.09 -0.02 1.55 16 12 C -0.12 -2.01 3.70 -88.68 -0.33 -2.34 16 13 H 0.09 1.44 7.91 -51.93 -0.41 1.03 16 14 C 0.14 3.28 5.71 -3.24 -0.02 3.27 16 15 N -0.60 -14.87 3.39 -171.13 -0.58 -15.45 16 16 C -0.22 -5.89 10.34 -15.06 -0.16 -6.05 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -25.94 10.08 55.49 0.56 -25.38 16 20 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 C 0.14 3.01 6.37 -3.25 -0.02 2.99 16 25 C -0.09 -1.47 1.09 -152.71 -0.17 -1.63 16 26 C -0.12 -1.74 8.50 37.16 0.32 -1.43 16 27 C 0.12 1.92 5.94 -3.23 -0.02 1.90 16 28 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 29 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.54 8.09 -51.92 -0.42 0.12 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.31 7.81 -51.93 -0.41 0.91 16 38 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.11 6.70 -51.93 -0.35 0.76 16 41 H 0.01 0.15 7.41 -51.93 -0.39 -0.24 16 42 H 0.12 3.18 5.44 -51.93 -0.28 2.89 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 45 H 0.04 0.87 7.82 -51.93 -0.41 0.46 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 1.33 7.29 -51.93 -0.38 0.95 16 50 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 51 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 52 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -32.01 409.49 -11.28 -43.29 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.87 Total: 1.90 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.07 Total: -6.25 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.59 Total: -51.14 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.01 -11.28 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092057629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.395 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds