Wall clock time and date at job start Wed Apr 1 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99837 * 2 1 4 4 C 1.38209 * 120.00262 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99921 * 359.97266 * 4 3 2 6 6 C 1.38207 * 119.99942 * 0.02562 * 5 4 3 7 7 C 1.50709 * 120.00098 * 179.97438 * 6 5 4 8 8 H 1.09002 * 115.55920 * 154.31559 * 7 6 5 9 9 C 1.53002 * 117.49540 * 8.62918 * 7 6 5 10 10 C 1.52999 * 117.49775 * 300.00572 * 7 6 5 11 11 H 1.08998 * 117.50093 * 359.97438 * 10 7 6 12 12 C 1.50703 * 117.49614 * 214.97677 * 10 7 6 13 13 O 1.21279 * 119.99926 * 359.97438 * 12 10 7 14 14 N 1.34775 * 119.99773 * 180.02562 * 12 10 7 15 15 C 1.46504 * 119.99531 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 H 1.08996 * 110.63567 * 56.68877 * 16 15 14 18 18 C 1.54323 * 110.72165 * 293.54989 * 16 15 14 19 19 N 1.47012 * 107.27122 * 219.44146 * 18 16 15 20 20 C 1.36943 * 125.64984 * 178.97599 * 19 18 16 21 21 H 1.07995 * 119.99981 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99864 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00089 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99690 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46992 * 119.99820 * 24 22 20 27 27 H 1.48499 * 109.47384 * 239.99876 * 24 22 20 28 28 C 1.47421 * 108.70603 * 358.94283 * 19 18 16 29 29 C 1.54913 * 104.83160 * 24.12725 * 28 19 18 30 30 H 1.08995 * 111.00330 * 81.07002 * 29 28 19 31 31 C 1.53002 * 111.00613 * 204.92362 * 29 28 19 32 32 C 1.38208 * 120.00241 * 180.23331 * 2 1 3 33 33 H 1.08999 * 109.47246 * 90.00516 * 1 2 3 34 34 H 1.09003 * 109.46767 * 209.99765 * 1 2 3 35 35 H 1.08997 * 109.47388 * 329.99490 * 1 2 3 36 36 H 1.08002 * 119.99748 * 359.97438 * 3 2 1 37 37 H 1.08007 * 120.00394 * 180.02562 * 4 3 2 38 38 H 1.08001 * 120.00171 * 180.02562 * 5 4 3 39 39 H 1.09003 * 117.49294 * 145.01986 * 9 7 6 40 40 H 1.08999 * 117.50037 * 359.97438 * 9 7 6 41 41 H 0.96992 * 120.00503 * 359.97438 * 14 12 10 42 42 H 1.09001 * 109.46891 * 60.00097 * 15 14 12 43 43 H 1.08993 * 109.47378 * 299.99469 * 15 14 12 44 44 H 1.08998 * 109.88049 * 338.86070 * 18 16 15 45 45 H 1.09000 * 109.88155 * 99.87092 * 18 16 15 46 46 H 0.96998 * 119.99615 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.37217 * 142.96726 * 28 19 18 48 48 H 1.08998 * 110.36809 * 265.29016 * 28 19 18 49 49 H 1.08990 * 109.47531 * 172.19932 * 31 29 28 50 50 H 1.09008 * 109.46816 * 292.19417 * 31 29 28 51 51 H 1.08997 * 109.47630 * 52.18830 * 31 29 28 52 52 H 1.08001 * 120.00428 * 0.04239 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0016 6 6 3.5807 -1.1968 0.0017 7 6 4.3343 -2.5019 0.0023 8 1 3.8018 -3.3522 0.4285 9 6 5.8494 -2.4426 0.2065 10 6 5.2757 -2.7746 -1.1725 11 1 5.3497 -2.0103 -1.9461 12 6 5.3959 -4.1983 -1.6518 13 8 4.7597 -5.0766 -1.1091 14 7 6.2113 -4.4956 -2.6830 15 6 6.3285 -5.8797 -3.1485 16 6 7.3099 -5.9421 -4.3208 17 1 8.2785 -5.5333 -4.0330 18 6 6.7443 -5.1947 -5.5468 19 7 7.0934 -5.9828 -6.7377 20 6 6.7567 -5.6711 -8.0280 21 1 6.1853 -4.7787 -8.2364 22 6 7.1490 -6.5028 -9.0679 23 7 7.8441 -7.5912 -8.8137 24 14 6.6891 -6.0780 -10.8278 25 1 5.9119 -4.8127 -10.8447 26 1 7.9240 -5.9106 -11.6354 27 1 5.8664 -7.1725 -11.4024 28 6 7.8668 -7.1639 -6.3130 29 6 7.4556 -7.3977 -4.8378 30 1 6.5070 -7.9309 -4.7765 31 6 8.5520 -8.1435 -4.0745 32 6 2.1981 -1.1969 -0.0049 33 1 -0.3634 -0.0001 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3634 0.8899 0.5139 36 1 1.6581 2.1326 -0.0004 37 1 4.1203 2.1328 0.0010 38 1 5.3517 0.0002 0.0025 39 1 6.3138 -3.2540 0.7670 40 1 6.3012 -1.4597 0.3400 41 1 6.7204 -3.7932 -3.1168 42 1 5.3516 -6.2377 -3.4736 43 1 6.6933 -6.5070 -2.3352 44 1 5.6608 -5.1108 -5.4623 45 1 7.1888 -4.2017 -5.6132 46 1 8.1179 -8.1725 -9.5404 47 1 7.6035 -8.0289 -6.9218 48 1 8.9357 -6.9621 -6.3814 49 1 8.3009 -8.1729 -3.0143 50 1 8.6330 -9.1611 -4.4570 51 1 9.5030 -7.6282 -4.2086 52 1 1.6582 -2.1322 -0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093044766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:16 Heat of formation + Delta-G solvation = 5.083136 kcal Electronic energy + Delta-G solvation = -28781.278220 eV Core-core repulsion = 24938.533824 eV Total energy + Delta-G solvation = -3842.744396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.35149 -40.34167 -39.58360 -37.51456 -36.02990 -34.66859 -33.38882 -32.57047 -31.81611 -30.81377 -27.99055 -27.74011 -26.93154 -25.45027 -24.52550 -23.91768 -22.95449 -21.74113 -21.39598 -20.77008 -20.41090 -18.92580 -18.44991 -17.65898 -17.17775 -16.85947 -16.45517 -16.17855 -15.93666 -15.77565 -15.55513 -15.04589 -14.93555 -14.66781 -14.62275 -14.28123 -14.04935 -14.03220 -13.58205 -13.52445 -13.40920 -13.17736 -13.03723 -13.00495 -12.79760 -12.77790 -12.67672 -12.47510 -12.20994 -11.94934 -11.87280 -11.84488 -11.64110 -11.57515 -11.43362 -11.41500 -11.25688 -10.85667 -10.75115 -10.10521 -9.65059 -9.40889 -8.88661 -7.78167 -5.22592 0.37133 0.49094 1.45420 1.46274 1.47987 1.56532 2.12312 2.48275 2.66546 3.08124 3.30970 3.50012 3.62143 3.69204 3.77857 3.85387 3.90443 3.96102 3.98658 4.07282 4.13143 4.22742 4.25842 4.37438 4.49144 4.51188 4.54712 4.61344 4.73766 4.74529 4.78870 4.80950 4.83684 4.86448 4.95521 4.97034 5.01769 5.08643 5.09481 5.16749 5.18191 5.31645 5.35620 5.38953 5.42959 5.50172 5.59592 5.69309 5.71757 5.72871 5.84080 6.13758 6.31378 6.53706 7.10667 7.21316 7.78253 8.41780 9.23480 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002057 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.331751 B =13609.165257 C =15074.165869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.059 4.059 7 C -0.091 4.091 8 H 0.105 0.895 9 C -0.121 4.121 10 C -0.180 4.180 11 H 0.142 0.858 12 C 0.539 3.461 13 O -0.586 6.586 14 N -0.712 5.712 15 C 0.145 3.855 16 C -0.088 4.088 17 H 0.097 0.903 18 C 0.138 3.862 19 N -0.629 5.629 20 C -0.238 4.238 21 H 0.079 0.921 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.979 3.021 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.162 3.838 29 C -0.102 4.102 30 H 0.064 0.936 31 C -0.127 4.127 32 C -0.133 4.133 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.414 0.586 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.018 0.982 45 H 0.030 0.970 46 H 0.247 0.753 47 H 0.068 0.932 48 H -0.008 1.008 49 H 0.073 0.927 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 16.727 22.339 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.110 4.110 8 H 0.123 0.877 9 C -0.158 4.158 10 C -0.201 4.201 11 H 0.160 0.840 12 C 0.326 3.674 13 O -0.467 6.467 14 N -0.362 5.362 15 C 0.021 3.979 16 C -0.107 4.107 17 H 0.115 0.885 18 C 0.013 3.987 19 N -0.355 5.355 20 C -0.367 4.367 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.037 3.963 29 C -0.122 4.122 30 H 0.082 0.918 31 C -0.185 4.185 32 C -0.151 4.151 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.251 0.749 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.010 0.990 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.350 16.039 22.496 28.349 hybrid contribution -0.043 -0.065 -1.705 1.707 sum -6.393 15.974 20.791 26.987 Atomic orbital electron populations 1.20838 0.89985 1.03521 1.02827 1.20194 0.97233 0.93024 0.99114 1.21359 0.94836 0.97963 1.00969 1.21447 0.94436 0.98717 0.98923 1.21291 1.01083 0.91500 1.00953 1.19172 0.93318 0.93201 1.00236 1.20974 0.92916 0.96537 1.00579 0.87690 1.23260 0.94032 1.04923 0.93603 1.22333 1.08782 0.94152 0.94823 0.84017 1.20109 0.78004 0.90105 0.79138 1.90672 1.46966 1.50596 1.58470 1.45894 1.45716 1.10607 1.34029 1.21184 0.98339 0.82896 0.95505 1.22325 0.98986 0.96599 0.92820 0.88488 1.21489 0.96622 0.94213 0.86425 1.44822 1.63153 1.25592 1.01931 1.19473 1.28067 1.06144 0.82983 0.90320 1.25635 1.00901 0.97563 1.02005 1.70064 1.43649 1.15461 1.30598 0.84993 0.77122 0.77488 0.79638 1.19173 1.21786 1.21919 1.21763 0.91797 0.91291 0.91416 1.22447 0.99407 0.94502 0.95842 0.91793 1.21600 0.97303 0.99775 0.99777 1.21040 0.93901 0.98190 1.01939 0.90853 0.91398 0.90159 0.84316 0.83690 0.83892 0.87814 0.84614 0.74941 0.93378 0.90592 0.96442 0.95229 0.94352 0.91391 0.99026 0.90815 0.92741 0.92574 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.10 -1.58 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 5 C -0.13 -1.90 9.30 22.27 0.21 -1.69 16 6 C -0.06 -1.08 5.61 -19.86 -0.11 -1.20 16 7 C -0.09 -1.75 5.56 -11.54 -0.06 -1.81 16 8 H 0.11 2.45 7.67 -2.39 -0.02 2.43 16 9 C -0.12 -1.71 9.56 30.60 0.29 -1.42 16 10 C -0.18 -3.36 5.82 -11.54 -0.07 -3.42 16 11 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 12 C 0.54 14.02 7.61 87.66 0.67 14.69 16 13 O -0.59 -20.08 16.26 -3.03 -0.05 -20.13 16 14 N -0.71 -17.14 5.40 -463.05 -2.50 -19.64 16 15 C 0.14 4.09 4.99 86.38 0.43 4.52 16 16 C -0.09 -2.78 2.48 -9.60 -0.02 -2.80 16 17 H 0.10 2.73 8.04 -2.39 -0.02 2.71 16 18 C 0.14 5.49 6.52 86.73 0.57 6.05 16 19 N -0.63 -32.45 3.39 -692.01 -2.35 -34.80 16 20 C -0.24 -13.43 10.27 84.03 0.86 -12.57 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 22 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 23 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 24 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 C 0.16 7.94 5.36 86.86 0.47 8.41 16 29 C -0.10 -3.69 3.09 -9.40 -0.03 -3.72 16 30 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 31 C -0.13 -3.66 9.31 71.98 0.67 -2.99 16 32 C -0.13 -2.57 9.39 22.27 0.21 -2.36 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 35 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 36 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.14 1.40 6.02 -2.91 -0.02 1.38 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.14 1.16 6.18 -2.39 -0.01 1.15 16 41 H 0.41 8.06 8.33 -92.71 -0.77 7.29 16 42 H 0.05 1.58 8.06 -2.39 -0.02 1.56 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.02 0.72 7.76 -2.39 -0.02 0.70 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.07 3.86 5.87 -2.39 -0.01 3.84 16 48 H -0.01 -0.43 7.98 -2.39 -0.02 -0.45 16 49 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 51 H 0.06 1.58 8.07 -2.39 -0.02 1.56 16 52 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.89 417.54 3.06 -69.83 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.13 Total: 22.48 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 5.58 Total: -9.19 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.63 Total: -111.04 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.89 3.06 -69.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093044766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.918 kcal (2) G-P(sol) polarization free energy of solvation -72.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds