Wall clock time and date at job start Wed Apr 1 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38235 * 119.99989 * 2 1 4 4 C 1.38229 * 119.99801 * 180.26991 * 3 2 1 5 5 C 1.38233 * 120.00174 * 359.75402 * 4 3 2 6 6 C 1.38227 * 120.00094 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00319 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00051 * 179.76794 * 2 1 3 9 9 C 1.50702 * 119.99932 * 0.02562 * 8 2 1 10 10 C 1.50706 * 109.47086 * 269.72490 * 9 8 2 11 11 O 1.21277 * 119.99864 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00107 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00191 * 179.97438 * 12 10 9 14 14 C 1.54321 * 112.36134 * 299.34679 * 13 12 10 15 15 C 1.55062 * 103.93547 * 262.38610 * 14 13 12 16 16 C 1.55057 * 102.10704 * 319.94498 * 15 14 13 17 17 C 1.54325 * 103.93854 * 40.05601 * 16 15 14 18 18 H 1.08993 * 111.69103 * 97.20422 * 17 16 15 19 19 C 1.53776 * 109.06055 * 221.16515 * 17 16 15 20 20 N 1.47218 * 106.37951 * 94.89174 * 19 17 16 21 21 C 1.36941 * 126.70120 * 211.27903 * 20 19 17 22 22 H 1.07995 * 119.99663 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99609 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00630 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99406 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47099 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47100 * 120.00239 * 25 23 21 28 28 H 1.48498 * 109.47089 * 239.99827 * 25 23 21 29 29 C 1.47214 * 106.59604 * 31.27894 * 20 19 17 30 30 H 1.09000 * 109.46591 * 270.23316 * 1 2 3 31 31 H 1.08994 * 109.47163 * 30.23373 * 1 2 3 32 32 H 1.08998 * 109.47025 * 150.23739 * 1 2 3 33 33 H 1.08006 * 120.00137 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.99870 * 179.72468 * 4 3 2 35 35 H 1.08001 * 119.99971 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47061 * 270.02248 * 7 6 5 37 37 H 1.09009 * 109.47072 * 30.02203 * 7 6 5 38 38 H 1.09001 * 109.47459 * 150.01572 * 7 6 5 39 39 H 1.08995 * 109.47274 * 149.73005 * 9 8 2 40 40 H 1.08994 * 109.47219 * 29.72557 * 9 8 2 41 41 H 0.96998 * 119.99604 * 0.02562 * 12 10 9 42 42 H 1.09002 * 110.53536 * 143.77856 * 14 13 12 43 43 H 1.08994 * 110.53769 * 21.00205 * 14 13 12 44 44 H 1.08996 * 110.90165 * 201.73821 * 15 14 13 45 45 H 1.09004 * 110.89792 * 78.14209 * 15 14 13 46 46 H 1.09003 * 110.52966 * 158.66676 * 16 15 14 47 47 H 1.08996 * 110.53083 * 281.43837 * 16 15 14 48 48 H 1.08999 * 110.07460 * 214.11918 * 19 17 16 49 49 H 1.09003 * 110.07606 * 335.60442 * 19 17 16 50 50 H 0.96994 * 120.00102 * 179.97438 * 24 23 21 51 51 H 1.08996 * 110.07042 * 87.94631 * 29 20 19 52 52 H 1.08990 * 110.07290 * 209.49029 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0056 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1971 -0.0005 7 6 4.3340 -2.5022 -0.0016 8 6 2.1982 -1.1971 0.0048 9 6 1.4447 -2.5022 0.0096 10 6 1.1989 -2.9352 1.4320 11 8 1.5960 -2.2512 2.3513 12 7 0.5368 -4.0822 1.6824 13 6 0.2984 -4.5034 3.0651 14 6 1.6108 -4.7236 3.8464 15 6 1.8412 -6.2548 3.7656 16 6 0.4053 -6.8099 3.9512 17 6 -0.4758 -5.8431 3.1323 18 1 -0.6899 -6.2367 2.1388 19 6 -1.7647 -5.5505 3.9183 20 7 -1.5235 -4.3029 4.6617 21 6 -2.0541 -3.9583 5.8762 22 1 -1.8017 -3.0095 6.3260 23 6 -2.9164 -4.8285 6.5289 24 7 -3.2244 -5.9846 5.9805 25 14 -3.6396 -4.3586 8.1860 26 1 -3.1395 -3.0176 8.5821 27 1 -5.1210 -4.3260 8.0882 28 1 -3.2328 -5.3590 9.2053 29 6 -0.6004 -3.4983 3.8446 30 1 -0.3632 0.0042 1.0277 31 1 -0.3633 0.8878 -0.5174 32 1 -0.3633 -0.8921 -0.5101 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1325 -0.0101 35 1 5.3517 0.0000 -0.0110 36 1 4.5111 -2.8187 -1.0295 37 1 5.2888 -2.3710 0.5077 38 1 3.7474 -3.2610 0.5163 39 1 2.0319 -3.2626 -0.5053 40 1 0.4904 -2.3726 -0.5009 41 1 0.2189 -4.6290 0.9471 42 1 1.4959 -4.4085 4.8836 43 1 2.4328 -4.1877 3.3719 44 1 2.4957 -6.5926 4.5690 45 1 2.2443 -6.5366 2.7928 46 1 0.3327 -7.8225 3.5543 47 1 0.1204 -6.7891 5.0031 48 1 -2.6007 -5.4207 3.2310 49 1 -1.9736 -6.3655 4.6113 50 1 -3.8266 -6.5928 6.4368 51 1 -1.1621 -2.8852 3.1399 52 1 0.0125 -2.8654 4.4862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098857770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:57 Heat of formation + Delta-G solvation = 3.989254 kcal Electronic energy + Delta-G solvation = -31214.964485 eV Core-core repulsion = 27372.172655 eV Total energy + Delta-G solvation = -3842.791830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.46896 -39.52746 -37.86273 -34.40073 -33.64312 -33.43427 -33.19965 -31.39296 -29.56722 -28.95594 -27.63535 -26.70460 -26.40971 -24.59746 -24.31720 -21.81453 -20.74748 -20.65507 -20.50266 -19.17628 -18.81441 -17.20136 -16.51463 -16.31452 -16.20996 -15.58140 -14.79476 -14.65022 -14.53813 -14.16739 -14.01972 -13.62444 -13.46312 -13.30938 -13.26717 -13.06035 -12.98426 -12.94088 -12.75919 -12.67794 -12.28358 -11.84527 -11.68928 -11.57116 -11.24487 -11.02610 -10.95560 -10.90685 -10.86731 -10.64290 -10.51363 -10.27093 -10.15898 -10.03072 -9.93543 -9.89413 -9.66439 -9.38862 -8.72227 -8.57960 -8.55425 -8.53743 -6.83927 -5.63579 -3.07581 1.32114 1.37015 2.92383 3.38862 3.40862 3.46777 3.49113 3.80663 4.50049 4.55972 4.71312 4.84640 4.89270 4.91379 5.03273 5.14589 5.19253 5.22829 5.27130 5.37611 5.39019 5.48391 5.51059 5.59347 5.60160 5.68079 5.68927 5.76386 5.84983 5.88549 5.89575 6.04128 6.10656 6.14325 6.15103 6.18918 6.28705 6.37778 6.45594 6.45937 6.50860 6.59581 6.64455 6.66469 6.82101 6.87021 6.98509 7.01010 7.18630 7.43775 7.64742 7.81325 7.88413 8.40811 8.57490 9.22811 9.83102 10.50478 11.37873 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.003093 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.052491 B = 9050.779526 C =10025.375648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.062 4.062 9 C -0.110 4.110 10 C 0.513 3.487 11 O -0.522 6.522 12 N -0.712 5.712 13 C 0.157 3.843 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.109 4.109 17 C -0.114 4.114 18 H 0.067 0.933 19 C 0.140 3.860 20 N -0.593 5.593 21 C -0.213 4.213 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.144 3.856 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.395 0.605 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.002 0.998 49 H 0.129 0.871 50 H 0.251 0.749 51 H 0.012 0.988 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 5.043 -16.522 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.062 4.062 9 C -0.150 4.150 10 C 0.298 3.702 11 O -0.397 6.397 12 N -0.363 5.363 13 C 0.070 3.930 14 C -0.147 4.147 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.135 4.135 18 H 0.086 0.914 19 C 0.014 3.986 20 N -0.317 5.317 21 C -0.341 4.341 22 H 0.097 0.903 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.016 3.984 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.228 0.772 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.020 0.980 49 H 0.146 0.854 50 H 0.062 0.938 51 H 0.030 0.970 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.899 5.482 -15.638 21.000 hybrid contribution -0.585 0.068 0.344 0.682 sum 12.314 5.550 -15.294 20.405 Atomic orbital electron populations 1.20885 0.91326 1.02410 1.02998 1.19696 0.95919 0.92557 0.98358 1.20930 0.94239 0.97262 1.02068 1.21048 0.94293 0.97785 1.00225 1.20908 0.99438 0.91989 1.02303 1.19657 0.92947 0.95381 0.98822 1.20819 1.00023 0.94565 1.01844 1.18943 0.92683 0.93192 1.01403 1.20784 1.02166 0.96271 0.95770 1.20331 0.78211 0.80955 0.90717 1.90731 1.49855 1.53006 1.46077 1.46034 1.58063 1.23767 1.08453 1.22101 0.95226 0.95537 0.80120 1.22584 0.96199 0.95301 1.00649 1.22605 0.97382 0.96028 1.00240 1.22444 0.93472 0.97146 1.01561 1.23027 0.98629 0.93011 0.98812 0.91435 1.22026 0.89469 0.93051 0.94047 1.44444 1.51666 1.16486 1.19072 1.19156 1.20544 1.01437 0.93013 0.90342 1.24749 1.00130 0.96748 0.99120 1.69595 1.39649 1.09696 1.38220 0.85986 0.78590 0.77559 0.83345 1.20516 1.21790 1.21743 1.21830 0.91030 0.92448 0.93094 0.90561 0.91639 0.91464 0.86299 0.86356 0.86381 0.91277 0.91507 0.91497 0.88315 0.87995 0.77154 0.90515 0.91862 0.92216 0.92577 0.92614 0.90159 0.97965 0.85373 0.93755 0.97036 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.60 36.01 0.35 -0.98 16 2 C -0.07 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.47 9.70 -39.59 -0.38 -1.85 16 4 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 5 C -0.13 -1.43 9.70 -39.59 -0.38 -1.82 16 6 C -0.07 -0.81 5.88 -104.63 -0.62 -1.43 16 7 C -0.12 -1.13 9.19 36.00 0.33 -0.80 16 8 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 9 C -0.11 -1.21 4.75 -29.03 -0.14 -1.35 16 10 C 0.51 7.57 6.77 -10.98 -0.07 7.50 16 11 O -0.52 -9.86 14.11 5.56 0.08 -9.78 16 12 N -0.71 -10.29 5.24 -44.72 -0.23 -10.52 16 13 C 0.16 2.83 0.94 -128.68 -0.12 2.71 16 14 C -0.11 -1.94 5.57 -24.95 -0.14 -2.07 16 15 C -0.12 -1.92 6.92 -24.55 -0.17 -2.09 16 16 C -0.11 -1.88 6.22 -24.95 -0.16 -2.03 16 17 C -0.11 -2.10 3.62 -88.53 -0.32 -2.42 16 18 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 19 C 0.14 3.32 5.56 -3.25 -0.02 3.30 16 20 N -0.59 -15.29 3.39 -169.90 -0.58 -15.87 16 21 C -0.21 -5.99 10.34 -15.06 -0.16 -6.15 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -26.37 10.08 55.49 0.56 -25.82 16 25 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.14 3.24 5.47 -2.19 -0.01 3.23 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 38 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 39 H 0.10 0.85 6.70 -51.93 -0.35 0.51 16 40 H 0.10 0.95 5.94 -51.93 -0.31 0.64 16 41 H 0.39 4.50 8.29 -40.82 -0.34 4.16 16 42 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 43 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 48 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 49 H 0.13 3.39 4.90 -51.93 -0.25 3.14 16 50 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 52 H 0.05 1.18 7.63 -51.93 -0.40 0.78 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.36 398.45 -11.20 -43.56 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.43 Total: 6.29 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.58 Total: -11.00 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.25 Total: -52.21 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.36 -11.20 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098857770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds